Tbg972.11.7380 | PUF nine target 1

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:  GO:0020023      

  • Curated_GO_Components:  kinetoplast      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
Tbg972.11.7380OTHER0.6514010.1529220.195678
No Results

  • Fasta :-

    >Tbg972.11.7380 MLSRAPRPNNRLIVVCSCIKNVSGWPFWKFQQMRKVKGVTDLCMLAFNSSGGSFEASITG SDYTLKNYENVVGYRQDMLEDFLQRCHDPGRSYFVYGGHGMGDYLELEENKLALQCHELA SILGKRKFEAMVFDSCFMASLECAYQLRHNTRYIGACEGYVWAPDPNLDQHVFNQYSASA MSRFKHPKNILLAIQRDYCNKSPLADFAVLDTTHVESLKKYVEEHVMQRVYDRATFYNSE QQQRLSSIAQKELQNAYEDIKCGAKMLAAAPLTAQAPLCTALRRDSGDLIPKKKKREPAR LALLRAAHFEHALYPSEVDDKHILDLKSYLIDMAREEEEGALVLPKGSELISTSGACGAL KGPPPRTGVVEVHGSLPPRETHNSARYGRDSRHKGLDLFHRVVISHRQPRRKSIYASHLG GLSFPVLEYSPLSKPLRDWEGMDKKELLRKAREFLRKGVVEGVQMSESGASECGVRGGSS SITENSDSVASSMVSPQNVKLGIAPSALMRASLTTPSSGAPGQTVSSENG
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/322 Sequence name : 322 Sequence length : 530 VALUES OF COMPUTED PARAMETERS Coef20 : 4.688 CoefTot : -1.313 ChDiff : 8 ZoneTo : 54 KR : 8 DE : 1 CleavSite : 21 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.418 1.312 0.186 0.504 MesoH : -0.389 0.007 -0.317 0.123 MuHd_075 : 32.515 21.714 10.712 7.235 MuHd_095 : 31.227 24.846 9.568 7.288 MuHd_100 : 34.622 21.876 10.301 8.137 MuHd_105 : 39.513 24.273 11.734 9.715 Hmax_075 : 7.817 20.650 0.170 3.710 Hmax_095 : 10.062 16.275 3.773 3.666 Hmax_100 : 16.900 15.800 3.740 5.130 Hmax_105 : 13.883 16.700 3.995 5.730 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.2235 0.7765 DFMC : 0.1580 0.8420 This protein is probably imported in mitochondria. f(Ser) = 0.1111 f(Arg) = 0.0741 CMi = 0.63966 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 530 Tbg972.11.7380 MLSRAPRPNNRLIVVCSCIKNVSGWPFWKFQQMRKVKGVTDLCMLAFNSSGGSFEASITGSDYTLKNYENVVGYRQDMLE 80 DFLQRCHDPGRSYFVYGGHGMGDYLELEENKLALQCHELASILGKRKFEAMVFDSCFMASLECAYQLRHNTRYIGACEGY 160 VWAPDPNLDQHVFNQYSASAMSRFKHPKNILLAIQRDYCNKSPLADFAVLDTTHVESLKKYVEEHVMQRVYDRATFYNSE 240 QQQRLSSIAQKELQNAYEDIKCGAKMLAAAPLTAQAPLCTALRRDSGDLIPKKKKREPARLALLRAAHFEHALYPSEVDD 320 KHILDLKSYLIDMAREEEEGALVLPKGSELISTSGACGALKGPPPRTGVVEVHGSLPPRETHNSARYGRDSRHKGLDLFH 400 RVVISHRQPRRKSIYASHLGGLSFPVLEYSPLSKPLRDWEGMDKKELLRKAREFLRKGVVEGVQMSESGASECGVRGGSS 480 SITENSDSVASSMVSPQNVKLGIAPSALMRASLTTPSSGAPGQTVSSENG 560 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ....................................................................P........... 400 ................................................................................ 480 .................................................. 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ Tbg972.11.7380 4 ---MLSR|AP 0.079 . Tbg972.11.7380 7 MLSRAPR|PN 0.286 . Tbg972.11.7380 11 APRPNNR|LI 0.080 . Tbg972.11.7380 20 VVCSCIK|NV 0.068 . Tbg972.11.7380 29 SGWPFWK|FQ 0.062 . Tbg972.11.7380 34 WKFQQMR|KV 0.157 . Tbg972.11.7380 35 KFQQMRK|VK 0.080 . Tbg972.11.7380 37 QQMRKVK|GV 0.267 . Tbg972.11.7380 66 GSDYTLK|NY 0.067 . Tbg972.11.7380 75 ENVVGYR|QD 0.076 . Tbg972.11.7380 85 LEDFLQR|CH 0.096 . Tbg972.11.7380 91 RCHDPGR|SY 0.170 . Tbg972.11.7380 111 LELEENK|LA 0.058 . Tbg972.11.7380 125 LASILGK|RK 0.074 . Tbg972.11.7380 126 ASILGKR|KF 0.193 . Tbg972.11.7380 127 SILGKRK|FE 0.087 . Tbg972.11.7380 148 ECAYQLR|HN 0.100 . Tbg972.11.7380 152 QLRHNTR|YI 0.234 . Tbg972.11.7380 183 SASAMSR|FK 0.140 . Tbg972.11.7380 185 SAMSRFK|HP 0.067 . Tbg972.11.7380 188 SRFKHPK|NI 0.080 . Tbg972.11.7380 196 ILLAIQR|DY 0.084 . Tbg972.11.7380 201 QRDYCNK|SP 0.074 . Tbg972.11.7380 219 THVESLK|KY 0.062 . Tbg972.11.7380 220 HVESLKK|YV 0.174 . Tbg972.11.7380 229 EEHVMQR|VY 0.091 . Tbg972.11.7380 233 MQRVYDR|AT 0.108 . Tbg972.11.7380 244 NSEQQQR|LS 0.110 . Tbg972.11.7380 251 LSSIAQK|EL 0.083 . Tbg972.11.7380 261 NAYEDIK|CG 0.060 . Tbg972.11.7380 265 DIKCGAK|ML 0.066 . Tbg972.11.7380 283 PLCTALR|RD 0.072 . Tbg972.11.7380 284 LCTALRR|DS 0.207 . Tbg972.11.7380 292 SGDLIPK|KK 0.056 . Tbg972.11.7380 293 GDLIPKK|KK 0.074 . Tbg972.11.7380 294 DLIPKKK|KR 0.111 . Tbg972.11.7380 295 LIPKKKK|RE 0.080 . Tbg972.11.7380 296 IPKKKKR|EP 0.178 . Tbg972.11.7380 300 KKREPAR|LA 0.107 . Tbg972.11.7380 305 ARLALLR|AA 0.108 . Tbg972.11.7380 321 PSEVDDK|HI 0.062 . Tbg972.11.7380 327 KHILDLK|SY 0.063 . Tbg972.11.7380 335 YLIDMAR|EE 0.086 . Tbg972.11.7380 346 GALVLPK|GS 0.069 . Tbg972.11.7380 361 GACGALK|GP 0.059 . Tbg972.11.7380 366 LKGPPPR|TG 0.094 . Tbg972.11.7380 379 HGSLPPR|ET 0.124 . Tbg972.11.7380 386 ETHNSAR|YG 0.157 . Tbg972.11.7380 389 NSARYGR|DS 0.554 *ProP* Tbg972.11.7380 392 RYGRDSR|HK 0.243 . Tbg972.11.7380 394 GRDSRHK|GL 0.072 . Tbg972.11.7380 401 GLDLFHR|VV 0.105 . Tbg972.11.7380 407 RVVISHR|QP 0.075 . Tbg972.11.7380 410 ISHRQPR|RK 0.404 . Tbg972.11.7380 411 SHRQPRR|KS 0.137 . Tbg972.11.7380 412 HRQPRRK|SI 0.253 . Tbg972.11.7380 434 EYSPLSK|PL 0.079 . Tbg972.11.7380 437 PLSKPLR|DW 0.166 . Tbg972.11.7380 444 DWEGMDK|KE 0.050 . Tbg972.11.7380 445 WEGMDKK|EL 0.090 . Tbg972.11.7380 449 DKKELLR|KA 0.083 . Tbg972.11.7380 450 KKELLRK|AR 0.082 . Tbg972.11.7380 452 ELLRKAR|EF 0.242 . Tbg972.11.7380 456 KAREFLR|KG 0.084 . Tbg972.11.7380 457 AREFLRK|GV 0.177 . Tbg972.11.7380 476 ASECGVR|GG 0.088 . Tbg972.11.7380 500 VSPQNVK|LG 0.051 . Tbg972.11.7380 510 APSALMR|AS 0.100 . ____________________________^_________________

  • Fasta :-

    >Tbg972.11.7380 ATGTTGTCCCGAGCCCCACGACCAAATAACCGCCTCATCGTGGTCTGCAGTTGCATTAAA AATGTGTCGGGGTGGCCATTCTGGAAGTTTCAGCAAATGAGGAAGGTAAAGGGCGTTACC GATCTTTGCATGCTTGCCTTTAACTCCAGTGGTGGGAGCTTTGAAGCAAGTATCACTGGG AGCGACTACACATTGAAGAACTACGAAAATGTTGTTGGCTATCGTCAGGACATGCTTGAA GACTTTCTACAGCGTTGCCACGACCCCGGTCGGAGTTATTTTGTGTACGGTGGTCATGGG ATGGGAGATTACCTGGAATTAGAGGAGAACAAACTGGCGTTGCAATGCCATGAGCTCGCC TCCATTCTCGGCAAGCGAAAATTTGAGGCGATGGTCTTTGATTCGTGTTTTATGGCCAGT CTCGAATGCGCTTATCAACTACGCCATAACACACGTTACATTGGGGCCTGTGAGGGTTAT GTGTGGGCACCTGACCCCAACCTTGACCAACACGTCTTTAACCAGTACTCTGCCTCTGCT ATGAGTCGCTTTAAACATCCAAAAAACATCCTACTTGCCATCCAGAGAGACTACTGCAAC AAGTCTCCTCTCGCCGACTTCGCTGTGTTGGATACCACTCATGTGGAGTCGCTCAAGAAG TATGTTGAAGAACATGTGATGCAGCGAGTATACGATCGAGCAACGTTTTACAACAGTGAG CAGCAGCAGAGGTTGAGTAGTATCGCACAGAAAGAATTGCAAAACGCCTATGAGGATATC AAATGTGGAGCCAAGATGCTAGCTGCCGCGCCGTTAACAGCACAGGCGCCCTTATGCACG GCGCTGCGGAGAGATTCGGGGGACCTAATTCCAAAGAAGAAGAAGAGGGAGCCGGCTCGC TTAGCTCTTTTGCGGGCTGCGCATTTTGAACATGCTTTATACCCCTCGGAGGTGGATGAC AAGCACATACTCGACCTAAAATCCTATCTGATTGACATGGCGCGTGAGGAGGAGGAGGGA GCCCTTGTTCTACCAAAAGGGAGTGAGTTAATATCAACATCAGGTGCCTGTGGTGCCCTT AAAGGACCGCCACCACGTACCGGTGTTGTGGAGGTTCATGGTAGCCTTCCACCGCGGGAA ACACATAATAGCGCACGATACGGGCGAGACAGCCGCCATAAAGGCCTCGACCTATTCCAC CGTGTCGTTATTAGTCATAGACAACCCCGTAGAAAGAGCATATACGCTTCGCACTTGGGT GGGCTCTCTTTCCCCGTGTTGGAATACAGCCCATTGTCGAAGCCGCTGCGGGATTGGGAG GGTATGGACAAGAAGGAGTTGTTGCGAAAAGCAAGGGAGTTCCTACGAAAGGGTGTTGTG GAGGGTGTTCAGATGAGTGAGAGTGGAGCCAGCGAATGTGGTGTTAGGGGTGGCAGCAGC AGCATCACCGAAAATAGTGATAGCGTGGCGTCATCCATGGTTTCTCCACAGAATGTGAAG TTGGGAATTGCACCGTCAGCATTAATGCGCGCATCATTGACGACACCATCGTCGGGAGCT CCAGGACAAACCGTGAGCAGTGAGAACGGCTAA
  • Download Fasta

  • Fasta :-

    No Results
    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
Tbg972.11.7380413 SPRRKSIYAS0.996unspTbg972.11.7380413 SPRRKSIYAS0.996unspTbg972.11.7380413 SPRRKSIYAS0.996unspTbg972.11.7380286 SLRRDSGDLI0.992unspTbg972.11.7380391 SYGRDSRHKG0.996unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India