Tbg972.5.1430 | mitochondrial processing peptidase, beta subunit, putative

_IDPredictionOTHERSPmTPCS_Position
Tbg972.5.1430OTHER0.7795750.0029620.217464
No Results

  • Fasta :-

    >Tbg972.5.1430 MSVSFSTLIQRSRPSSNHATTKLLSNVLAKIPPTTLSTVGSGVRVACEENPIASLATVGV WLNAGTRHEPAQYAGTARVLQKCGFLGTSNQTAAQIAAAVDELGGQLTANVGREHTHLYM RVAREDTERAVSLLADVVRNARLSDEDVEVAKQAVLRDQHDFEQRPDDICMDNLHRCAFD STTHGPGTPLYGTEVGTTRLSNAQLREYRDKMLSAGRVVVVGSGAVNHTALERAATSAFG DLQKGTVTLAGVPEARFVGGEYKLWNLRYKTVHIGWAFETCGAACEDSLPLALACEVPGP FHRSQHELGQHAMHRVLKTFSSLDHSTPTNTHFNEKCIEIANPFLHQYKDTGLCGMYVVG RPAQAGPGDGTAMIEVFQYTIAEWCRICQKILHEQELAQAKVNLKSQLLFNMDGSSNSAE DIGRQVLHYGRRIPLEEMYARIDDVTPTNVQEVLQHYFYGRKPVYSYLGYCANIPGYDWT QHWSYKYWY
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/385 Sequence name : 385 Sequence length : 489 VALUES OF COMPUTED PARAMETERS Coef20 : 4.678 CoefTot : 0.299 ChDiff : -5 ZoneTo : 47 KR : 5 DE : 0 CleavSite : 15 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.929 1.000 0.118 0.454 MesoH : -0.267 0.272 -0.283 0.209 MuHd_075 : 29.013 19.328 8.714 6.857 MuHd_095 : 31.912 28.081 11.188 8.282 MuHd_100 : 27.826 21.496 9.424 7.501 MuHd_105 : 27.237 19.824 7.252 7.236 Hmax_075 : 12.000 2.363 1.833 1.733 Hmax_095 : 15.838 20.038 3.204 6.099 Hmax_100 : 14.900 14.200 2.689 5.620 Hmax_105 : 12.700 13.183 2.381 5.273 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0424 0.9576 DFMC : 0.0625 0.9375 This protein is probably imported in chloroplast. f(Ser) = 0.1915 f(Arg) = 0.0638 CMi = 1.20160 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 489 Tbg972.5.1430 MSVSFSTLIQRSRPSSNHATTKLLSNVLAKIPPTTLSTVGSGVRVACEENPIASLATVGVWLNAGTRHEPAQYAGTARVL 80 QKCGFLGTSNQTAAQIAAAVDELGGQLTANVGREHTHLYMRVAREDTERAVSLLADVVRNARLSDEDVEVAKQAVLRDQH 160 DFEQRPDDICMDNLHRCAFDSTTHGPGTPLYGTEVGTTRLSNAQLREYRDKMLSAGRVVVVGSGAVNHTALERAATSAFG 240 DLQKGTVTLAGVPEARFVGGEYKLWNLRYKTVHIGWAFETCGAACEDSLPLALACEVPGPFHRSQHELGQHAMHRVLKTF 320 SSLDHSTPTNTHFNEKCIEIANPFLHQYKDTGLCGMYVVGRPAQAGPGDGTAMIEVFQYTIAEWCRICQKILHEQELAQA 400 KVNLKSQLLFNMDGSSNSAEDIGRQVLHYGRRIPLEEMYARIDDVTPTNVQEVLQHYFYGRKPVYSYLGYCANIPGYDWT 480 QHWSYKYWY 560 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ......... 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ Tbg972.5.1430 11 FSTLIQR|SR 0.091 . Tbg972.5.1430 13 TLIQRSR|PS 0.105 . Tbg972.5.1430 22 SNHATTK|LL 0.090 . Tbg972.5.1430 30 LSNVLAK|IP 0.073 . Tbg972.5.1430 44 TVGSGVR|VA 0.089 . Tbg972.5.1430 67 WLNAGTR|HE 0.082 . Tbg972.5.1430 78 QYAGTAR|VL 0.105 . Tbg972.5.1430 82 TARVLQK|CG 0.071 . Tbg972.5.1430 113 LTANVGR|EH 0.090 . Tbg972.5.1430 121 HTHLYMR|VA 0.087 . Tbg972.5.1430 124 LYMRVAR|ED 0.255 . Tbg972.5.1430 129 AREDTER|AV 0.125 . Tbg972.5.1430 139 LLADVVR|NA 0.106 . Tbg972.5.1430 142 DVVRNAR|LS 0.167 . Tbg972.5.1430 152 EDVEVAK|QA 0.064 . Tbg972.5.1430 157 AKQAVLR|DQ 0.149 . Tbg972.5.1430 165 QHDFEQR|PD 0.089 . Tbg972.5.1430 176 CMDNLHR|CA 0.098 . Tbg972.5.1430 199 TEVGTTR|LS 0.093 . Tbg972.5.1430 206 LSNAQLR|EY 0.122 . Tbg972.5.1430 209 AQLREYR|DK 0.230 . Tbg972.5.1430 211 LREYRDK|ML 0.102 . Tbg972.5.1430 217 KMLSAGR|VV 0.085 . Tbg972.5.1430 233 NHTALER|AA 0.096 . Tbg972.5.1430 244 AFGDLQK|GT 0.062 . Tbg972.5.1430 256 AGVPEAR|FV 0.206 . Tbg972.5.1430 263 FVGGEYK|LW 0.058 . Tbg972.5.1430 268 YKLWNLR|YK 0.082 . Tbg972.5.1430 270 LWNLRYK|TV 0.100 . Tbg972.5.1430 303 VPGPFHR|SQ 0.174 . Tbg972.5.1430 315 GQHAMHR|VL 0.084 . Tbg972.5.1430 318 AMHRVLK|TF 0.161 . Tbg972.5.1430 336 NTHFNEK|CI 0.080 . Tbg972.5.1430 349 PFLHQYK|DT 0.089 . Tbg972.5.1430 361 GMYVVGR|PA 0.141 . Tbg972.5.1430 386 TIAEWCR|IC 0.117 . Tbg972.5.1430 390 WCRICQK|IL 0.072 . Tbg972.5.1430 401 QELAQAK|VN 0.060 . Tbg972.5.1430 405 QAKVNLK|SQ 0.062 . Tbg972.5.1430 424 SAEDIGR|QV 0.122 . Tbg972.5.1430 431 QVLHYGR|RI 0.074 . Tbg972.5.1430 432 VLHYGRR|IP 0.100 . Tbg972.5.1430 441 LEEMYAR|ID 0.090 . Tbg972.5.1430 461 QHYFYGR|KP 0.074 . Tbg972.5.1430 462 HYFYGRK|PV 0.090 . Tbg972.5.1430 486 TQHWSYK|YW 0.096 . ____________________________^_________________

  • Fasta :-

    >Tbg972.5.1430 ATGTCTGTCAGTTTTTCCACTCTGATTCAGCGGTCCCGCCCCTCTTCAAACCATGCAACC ACTAAACTTCTCAGCAATGTCCTTGCAAAGATTCCCCCAACGACACTCAGCACAGTTGGT AGCGGCGTGCGAGTGGCATGCGAGGAGAATCCCATCGCGTCTCTCGCTACTGTTGGTGTA TGGTTGAATGCGGGAACTCGTCATGAACCTGCGCAATACGCCGGCACTGCGCGAGTCTTG CAAAAGTGCGGGTTTCTTGGTACTTCCAACCAAACCGCAGCACAAATCGCCGCAGCGGTG GACGAACTCGGTGGGCAGCTAACAGCAAACGTTGGCCGCGAGCACACACATTTGTATATG CGTGTCGCCCGCGAAGATACGGAGCGTGCTGTGTCTCTCCTGGCGGATGTGGTACGCAAT GCCCGTTTGAGCGATGAGGATGTGGAGGTGGCGAAACAGGCGGTGCTACGCGATCAACAT GACTTTGAACAGCGGCCAGATGACATTTGCATGGATAATCTTCACCGTTGTGCCTTCGAC AGCACAACACATGGGCCTGGTACACCGCTGTACGGCACAGAGGTCGGGACGACGCGTCTC AGCAATGCGCAGCTAAGAGAGTACCGTGACAAGATGCTTAGCGCCGGCCGCGTGGTGGTC GTGGGGAGCGGAGCTGTGAACCATACCGCTTTGGAACGGGCTGCGACCAGCGCGTTCGGG GACCTGCAGAAGGGAACTGTAACACTCGCCGGAGTTCCCGAAGCCCGGTTTGTGGGAGGA GAGTACAAACTGTGGAACTTGCGTTACAAGACTGTCCACATTGGATGGGCTTTTGAAACC TGTGGCGCAGCATGCGAGGACTCCCTTCCGCTTGCACTCGCCTGTGAAGTTCCCGGTCCG TTCCACCGTTCCCAACATGAACTTGGACAGCATGCCATGCATCGTGTCCTAAAAACTTTC TCTTCGCTGGATCACAGCACTCCTACCAACACCCACTTCAACGAGAAGTGTATTGAAATT GCGAACCCTTTTCTGCACCAGTACAAAGACACGGGGTTATGCGGAATGTATGTTGTGGGG CGGCCGGCTCAGGCGGGTCCTGGAGACGGCACGGCAATGATTGAAGTGTTTCAATACACC ATCGCGGAATGGTGCCGCATCTGCCAGAAGATACTCCATGAACAGGAACTTGCTCAGGCC AAGGTGAACCTCAAGTCCCAACTGCTCTTCAACATGGACGGCAGCTCAAACTCTGCGGAG GATATTGGTCGGCAGGTACTTCACTATGGGCGCCGCATTCCGCTGGAGGAAATGTACGCT CGTATCGATGATGTGACACCAACAAATGTACAGGAGGTGCTTCAGCACTACTTCTACGGG CGGAAACCGGTGTACAGTTATCTTGGTTACTGTGCTAACATTCCAGGTTATGACTGGACA CAACACTGGTCCTACAAGTACTGGTATTAA
  • Download Fasta

  • Fasta :-

    MSVSFSTLIQRSRPSSNHATTKLLSNVLAKIPPTTLSTVGSGVRVACEENPIASLATVGV WLNAGTRHEPAQYAGTARVLQKCGFLGTSNQTAAQIAAAVDELGGQLTANVGREHTHLYM RVAREDTERAVSLLADVVRNARLSDEDVEVAKQAVLRDQHDFEQRPDDICMDNLHRCAFD STTHGPGTPLYGTEVGTTRLSNAQLREYRDKMLSAGRVVVVGSGAVNHTALERAATSAFG DLQKGTVTLAGVPEARFVGGEYKLWNLRYKTVHIGWAFETCGAACEDSLPLALACEVPGP FHRSQHELGQHAMHRVLKTFSSLDHSTPTNTHFNEKCIEIANPFLHQYKDTGLCGMYVVG RPAQAGPGDGTAMIEVFQYTIAEWCRICQKILHEQELAQAKVNLKSQLLFNMDGSSNSAE DIGRQVLHYGRRIPLEEMYARIDDVTPTNVQEVLQHYFYGRKPVYSYLGYCANIPGYDWT QHWSYKYWY

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
Tbg972.5.1430144 SNARLSDEDV0.998unspTbg972.5.1430144 SNARLSDEDV0.998unspTbg972.5.1430144 SNARLSDEDV0.998unspTbg972.5.1430418 SGSSNSAEDI0.995unspTbg972.5.143016 SSRPSSNHAT0.996unspTbg972.5.1430127 TAREDTERAV0.993unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India