Tbg972.5.2080 | ATP-dependent protease ATPase subunit HslU1, putative

_IDPredictionOTHERSPmTPCS_Position
Tbg972.5.2080mTP0.0461090.0000590.953831CS pos: 25-26. VRF-SG. Pr: 0.8246
No Results

  • Fasta :-

    >Tbg972.5.2080 MMRRVTSSLPSALKLGRSLGPNVRFSGGAAAVEASPAIPPNSSSGKTLVRNMKPRELMQE LDNYIIGQTEAKKAVAVALRNRWRRHQVDAAIREEISPKNILMIGPTGVGKTEIARRLAK LVDAPFIKVEATKFTEVGFHGRDVESIIEDLYKASLTQTKQNIMRRHEETARQKAENRIL KALAGVSDGFREHLRSGALDDIEVIVELQEKKEKPKNSGTNEGVFISLEIPSSIGGQRPQ TVKKVMKIKDAIPAVLQEELDKIVDTEDVSAEALRACEEDGIVVIDEIDKIVTASGGYKG HQASAEGVQQDLLPLVEGTTVSTKGNVQIKTDKILFICSGAFHSVKPSDMLAELQGRLPI RVELKPLTKEDFHRIITEPRYNLIKQHVMMMKTEGVDLVFTDDALWEIASIAAHINSTVQ NIGARRLITITEKVVEEVSFDGPDRKGETFVIDAAYVRNSVESMMKKVDIKKFIL
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/294 Sequence name : 294 Sequence length : 475 VALUES OF COMPUTED PARAMETERS Coef20 : 4.709 CoefTot : -0.468 ChDiff : 2 ZoneTo : 55 KR : 9 DE : 1 CleavSite : 27 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.476 0.988 -0.105 0.454 MesoH : -0.791 0.178 -0.448 0.175 MuHd_075 : 38.418 23.458 10.310 8.063 MuHd_095 : 26.558 20.173 8.064 6.759 MuHd_100 : 40.042 27.481 10.382 10.289 MuHd_105 : 48.209 31.200 11.712 11.918 Hmax_075 : 13.650 9.100 1.797 3.185 Hmax_095 : 11.375 12.000 2.435 2.783 Hmax_100 : 17.600 18.900 3.177 6.140 Hmax_105 : 16.600 18.500 2.874 5.480 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0392 0.9608 DFMC : 0.0330 0.9670 This protein is probably imported in mitochondria. f(Ser) = 0.1636 f(Arg) = 0.1091 CMi = 0.73469 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 475 Tbg972.5.2080 MMRRVTSSLPSALKLGRSLGPNVRFSGGAAAVEASPAIPPNSSSGKTLVRNMKPRELMQELDNYIIGQTEAKKAVAVALR 80 NRWRRHQVDAAIREEISPKNILMIGPTGVGKTEIARRLAKLVDAPFIKVEATKFTEVGFHGRDVESIIEDLYKASLTQTK 160 QNIMRRHEETARQKAENRILKALAGVSDGFREHLRSGALDDIEVIVELQEKKEKPKNSGTNEGVFISLEIPSSIGGQRPQ 240 TVKKVMKIKDAIPAVLQEELDKIVDTEDVSAEALRACEEDGIVVIDEIDKIVTASGGYKGHQASAEGVQQDLLPLVEGTT 320 VSTKGNVQIKTDKILFICSGAFHSVKPSDMLAELQGRLPIRVELKPLTKEDFHRIITEPRYNLIKQHVMMMKTEGVDLVF 400 TDDALWEIASIAAHINSTVQNIGARRLITITEKVVEEVSFDGPDRKGETFVIDAAYVRNSVESMMKKVDIKKFIL 480 ................................................................................ 80 ....P........................................................................... 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ........................................................................... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ Tbg972.5.2080 3 ----MMR|RV 0.136 . Tbg972.5.2080 4 ---MMRR|VT 0.128 . Tbg972.5.2080 14 SLPSALK|LG 0.056 . Tbg972.5.2080 17 SALKLGR|SL 0.166 . Tbg972.5.2080 24 SLGPNVR|FS 0.117 . Tbg972.5.2080 46 PNSSSGK|TL 0.072 . Tbg972.5.2080 50 SGKTLVR|NM 0.090 . Tbg972.5.2080 53 TLVRNMK|PR 0.116 . Tbg972.5.2080 55 VRNMKPR|EL 0.222 . Tbg972.5.2080 72 IGQTEAK|KA 0.071 . Tbg972.5.2080 73 GQTEAKK|AV 0.130 . Tbg972.5.2080 80 AVAVALR|NR 0.068 . Tbg972.5.2080 82 AVALRNR|WR 0.089 . Tbg972.5.2080 84 ALRNRWR|RH 0.074 . Tbg972.5.2080 85 LRNRWRR|HQ 0.613 *ProP* Tbg972.5.2080 93 QVDAAIR|EE 0.064 . Tbg972.5.2080 99 REEISPK|NI 0.079 . Tbg972.5.2080 111 GPTGVGK|TE 0.060 . Tbg972.5.2080 116 GKTEIAR|RL 0.082 . Tbg972.5.2080 117 KTEIARR|LA 0.120 . Tbg972.5.2080 120 IARRLAK|LV 0.233 . Tbg972.5.2080 128 VDAPFIK|VE 0.061 . Tbg972.5.2080 133 IKVEATK|FT 0.100 . Tbg972.5.2080 142 EVGFHGR|DV 0.215 . Tbg972.5.2080 153 IIEDLYK|AS 0.067 . Tbg972.5.2080 160 ASLTQTK|QN 0.066 . Tbg972.5.2080 165 TKQNIMR|RH 0.107 . Tbg972.5.2080 166 KQNIMRR|HE 0.196 . Tbg972.5.2080 172 RHEETAR|QK 0.082 . Tbg972.5.2080 174 EETARQK|AE 0.063 . Tbg972.5.2080 178 RQKAENR|IL 0.086 . Tbg972.5.2080 181 AENRILK|AL 0.161 . Tbg972.5.2080 191 GVSDGFR|EH 0.076 . Tbg972.5.2080 195 GFREHLR|SG 0.092 . Tbg972.5.2080 211 IVELQEK|KE 0.057 . Tbg972.5.2080 212 VELQEKK|EK 0.073 . Tbg972.5.2080 214 LQEKKEK|PK 0.068 . Tbg972.5.2080 216 EKKEKPK|NS 0.096 . Tbg972.5.2080 238 SSIGGQR|PQ 0.092 . Tbg972.5.2080 243 QRPQTVK|KV 0.086 . Tbg972.5.2080 244 RPQTVKK|VM 0.106 . Tbg972.5.2080 247 TVKKVMK|IK 0.083 . Tbg972.5.2080 249 KKVMKIK|DA 0.116 . Tbg972.5.2080 262 LQEELDK|IV 0.080 . Tbg972.5.2080 275 VSAEALR|AC 0.095 . Tbg972.5.2080 290 VIDEIDK|IV 0.069 . Tbg972.5.2080 299 TASGGYK|GH 0.076 . Tbg972.5.2080 324 GTTVSTK|GN 0.068 . Tbg972.5.2080 330 KGNVQIK|TD 0.067 . Tbg972.5.2080 333 VQIKTDK|IL 0.065 . Tbg972.5.2080 346 GAFHSVK|PS 0.065 . Tbg972.5.2080 357 LAELQGR|LP 0.077 . Tbg972.5.2080 361 QGRLPIR|VE 0.081 . Tbg972.5.2080 365 PIRVELK|PL 0.070 . Tbg972.5.2080 369 ELKPLTK|ED 0.059 . Tbg972.5.2080 374 TKEDFHR|II 0.117 . Tbg972.5.2080 380 RIITEPR|YN 0.108 . Tbg972.5.2080 385 PRYNLIK|QH 0.067 . Tbg972.5.2080 392 QHVMMMK|TE 0.071 . Tbg972.5.2080 425 VQNIGAR|RL 0.093 . Tbg972.5.2080 426 QNIGARR|LI 0.139 . Tbg972.5.2080 433 LITITEK|VV 0.069 . Tbg972.5.2080 445 SFDGPDR|KG 0.079 . Tbg972.5.2080 446 FDGPDRK|GE 0.086 . Tbg972.5.2080 458 IDAAYVR|NS 0.076 . Tbg972.5.2080 466 SVESMMK|KV 0.075 . Tbg972.5.2080 467 VESMMKK|VD 0.105 . Tbg972.5.2080 471 MKKVDIK|KF 0.063 . Tbg972.5.2080 472 KKVDIKK|FI 0.108 . ____________________________^_________________

  • Fasta :-

    >Tbg972.5.2080 ATGATGCGGCGAGTAACTTCTTCATTACCATCGGCACTGAAGCTTGGTAGAAGCTTAGGG CCCAACGTCCGCTTCAGTGGGGGAGCGGCGGCCGTTGAAGCGTCTCCCGCAATCCCACCG AACTCCTCTTCTGGAAAAACGCTTGTCCGTAACATGAAACCGCGTGAACTGATGCAGGAG CTGGACAATTATATTATTGGACAGACGGAGGCGAAGAAAGCGGTGGCGGTGGCGCTGCGT AACCGCTGGCGTCGCCACCAGGTGGACGCGGCGATCCGTGAAGAAATTTCTCCCAAAAAT ATATTAATGATAGGTCCTACGGGTGTTGGGAAAACAGAGATTGCGCGACGTCTGGCCAAG TTGGTGGACGCTCCGTTTATTAAGGTGGAGGCGACAAAGTTCACCGAAGTGGGATTTCAC GGCCGAGATGTGGAGAGCATCATCGAAGACCTCTACAAGGCCTCGCTCACGCAAACAAAA CAAAATATCATGAGACGGCACGAAGAAACGGCACGACAGAAGGCGGAGAATCGCATTCTG AAGGCCCTAGCCGGCGTTTCCGATGGCTTCCGCGAGCACCTCCGGAGTGGTGCCCTCGAC GATATTGAGGTCATAGTTGAGCTTCAGGAAAAGAAGGAAAAACCGAAAAATTCAGGAACG AATGAAGGTGTGTTTATCTCACTTGAAATTCCTTCGTCGATCGGTGGCCAGCGTCCGCAG ACGGTGAAGAAGGTGATGAAGATAAAGGACGCCATTCCTGCTGTACTGCAAGAGGAGCTC GACAAGATTGTGGACACGGAGGATGTTTCTGCTGAGGCGCTGCGTGCCTGTGAGGAGGAT GGCATTGTGGTTATTGATGAGATCGACAAAATCGTAACAGCTTCCGGTGGCTACAAGGGA CACCAGGCCTCTGCAGAGGGTGTTCAGCAGGACCTGTTGCCGTTAGTGGAGGGAACAACT GTTTCTACGAAGGGAAACGTGCAGATCAAGACGGACAAGATTCTCTTCATTTGTAGCGGC GCCTTCCACAGCGTGAAACCGTCTGACATGTTGGCGGAGCTGCAGGGTCGACTTCCTATT CGTGTAGAGTTGAAGCCCCTCACCAAGGAAGATTTTCATCGCATTATAACGGAGCCAAGG TACAATCTCATTAAGCAGCACGTCATGATGATGAAAACGGAAGGTGTTGATCTTGTCTTT ACCGACGATGCGCTATGGGAAATCGCGTCTATCGCTGCACACATCAACTCCACCGTGCAG AATATAGGCGCACGCCGTCTTATCACCATCACAGAGAAGGTTGTGGAGGAAGTCAGTTTC GATGGCCCTGACAGAAAAGGGGAAACGTTTGTTATTGATGCGGCTTACGTAAGGAACTCT GTCGAGAGCATGATGAAGAAGGTGGACATCAAGAAATTCATCCTCTAG
  • Download Fasta

  • Fasta :-

    MMRRVTSSLPSALKLGRSLGPNVRFSGGAAAVEASPAIPPNSSSGKTLVRNMKPRELMQE LDNYIIGQTEAKKAVAVALRNRWRRHQVDAAIREEISPKNILMIGPTGVGKTEIARRLAK LVDAPFIKVEATKFTEVGFHGRDVESIIEDLYKASLTQTKQNIMRRHEETARQKAENRIL KALAGVSDGFREHLRSGALDDIEVIVELQEKKEKPKNSGTNEGVFISLEIPSSIGGQRPQ TVKKVMKIKDAIPAVLQEELDKIVDTEDVSAEALRACEEDGIVVIDEIDKIVTASGGYKG HQASAEGVQQDLLPLVEGTTVSTKGNVQIKTDKILFICSGAFHSVKPSDMLAELQGRLPI RVELKPLTKEDFHRIITEPRYNLIKQHVMMMKTEGVDLVFTDDALWEIASIAAHINSTVQ NIGARRLITITEKVVEEVSFDGPDRKGETFVIDAAYVRNSVESMMKKVDIKKFIL

  • title: ATP binding site
  • coordinates: P106,T107,G108,V109,G110,K111,T112,E113
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
Tbg972.5.2080460 SYVRNSVESM0.994unspTbg972.5.2080460 SYVRNSVESM0.994unspTbg972.5.2080460 SYVRNSVESM0.994unspTbg972.5.208026 SNVRFSGGAA0.992unspTbg972.5.208097 SREEISPKNI0.995unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India