Tbg972.6.700 | metacaspase MCA3

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_IDPredictionOTHERSPmTPCS_Position
Tbg972.6.700OTHER0.7459840.2504290.003587
No Results

  • Fasta :-

    >Tbg972.6.700 MAVDPRCLLSLCSTISKASSAKGTNDFVKIGMELWQTAQPYLVQALGLQPPPPKVDVDAA VANAGDAHGEQPWVATPLPGQTVRALFIGINYYGTSAALSGCCNDVKQMLATLQKKGLPI NEAVILVDEDNFPGRTDQPTRDNIVRYMAWLVKDAKPGDVLFFHYSGHGTQCKSRGDSDE KYDQCIAPVDFQKSGCIVDDDIHKLLFSRLPEKVRLTAVFDCCHSGSIMDLPFTYVCSGG EQASGTPHMKRIREGNDVLGDVMMISGCADEQTSADVKNTATFGTGSTGAGGAATQCITC MLMNNQSLSYGKLLIETRDMLKRKGFKQVPQLSASKAIDLDQTFSLTEMFSVDRSVQ
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/140 Sequence name : 140 Sequence length : 357 VALUES OF COMPUTED PARAMETERS Coef20 : 4.739 CoefTot : 0.383 ChDiff : -6 ZoneTo : 25 KR : 3 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.447 1.059 0.271 0.519 MesoH : -0.240 0.231 -0.286 0.254 MuHd_075 : 17.691 8.027 3.452 3.037 MuHd_095 : 26.311 18.130 8.650 6.135 MuHd_100 : 20.202 17.031 6.559 6.355 MuHd_105 : 21.809 18.744 6.347 7.128 Hmax_075 : 12.483 10.412 4.975 2.998 Hmax_095 : 13.037 14.875 5.032 3.763 Hmax_100 : 14.500 12.200 3.334 3.650 Hmax_105 : 15.500 17.500 4.029 4.468 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.5352 0.4648 DFMC : 0.4674 0.5326 This protein is probably imported in chloroplast. f(Ser) = 0.2000 f(Arg) = 0.0400 CMi = 1.58730 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 357 Tbg972.6.700 MAVDPRCLLSLCSTISKASSAKGTNDFVKIGMELWQTAQPYLVQALGLQPPPPKVDVDAAVANAGDAHGEQPWVATPLPG 80 QTVRALFIGINYYGTSAALSGCCNDVKQMLATLQKKGLPINEAVILVDEDNFPGRTDQPTRDNIVRYMAWLVKDAKPGDV 160 LFFHYSGHGTQCKSRGDSDEKYDQCIAPVDFQKSGCIVDDDIHKLLFSRLPEKVRLTAVFDCCHSGSIMDLPFTYVCSGG 240 EQASGTPHMKRIREGNDVLGDVMMISGCADEQTSADVKNTATFGTGSTGAGGAATQCITCMLMNNQSLSYGKLLIETRDM 320 LKRKGFKQVPQLSASKAIDLDQTFSLTEMFSVDRSVQ 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ..................................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ Tbg972.6.700 6 -MAVDPR|CL 0.083 . Tbg972.6.700 17 LCSTISK|AS 0.078 . Tbg972.6.700 22 SKASSAK|GT 0.089 . Tbg972.6.700 29 GTNDFVK|IG 0.068 . Tbg972.6.700 54 LQPPPPK|VD 0.058 . Tbg972.6.700 84 LPGQTVR|AL 0.129 . Tbg972.6.700 107 GCCNDVK|QM 0.060 . Tbg972.6.700 115 MLATLQK|KG 0.061 . Tbg972.6.700 116 LATLQKK|GL 0.104 . Tbg972.6.700 135 EDNFPGR|TD 0.097 . Tbg972.6.700 141 RTDQPTR|DN 0.098 . Tbg972.6.700 146 TRDNIVR|YM 0.110 . Tbg972.6.700 153 YMAWLVK|DA 0.083 . Tbg972.6.700 156 WLVKDAK|PG 0.065 . Tbg972.6.700 173 GHGTQCK|SR 0.100 . Tbg972.6.700 175 GTQCKSR|GD 0.130 . Tbg972.6.700 181 RGDSDEK|YD 0.059 . Tbg972.6.700 193 APVDFQK|SG 0.089 . Tbg972.6.700 204 VDDDIHK|LL 0.059 . Tbg972.6.700 209 HKLLFSR|LP 0.091 . Tbg972.6.700 213 FSRLPEK|VR 0.058 . Tbg972.6.700 215 RLPEKVR|LT 0.082 . Tbg972.6.700 250 SGTPHMK|RI 0.073 . Tbg972.6.700 251 GTPHMKR|IR 0.162 . Tbg972.6.700 253 PHMKRIR|EG 0.106 . Tbg972.6.700 278 QTSADVK|NT 0.074 . Tbg972.6.700 312 QSLSYGK|LL 0.066 . Tbg972.6.700 318 KLLIETR|DM 0.077 . Tbg972.6.700 322 ETRDMLK|RK 0.059 . Tbg972.6.700 323 TRDMLKR|KG 0.248 . Tbg972.6.700 324 RDMLKRK|GF 0.130 . Tbg972.6.700 327 LKRKGFK|QV 0.079 . Tbg972.6.700 336 PQLSASK|AI 0.059 . Tbg972.6.700 354 EMFSVDR|SV 0.151 . ____________________________^_________________

  • Fasta :-

    >Tbg972.6.700 ATGGCCGTGGACCCAAGGTGTCTTTTGAGTCTCTGCTCCACAATATCAAAAGCAAGTAGT GCAAAGGGCACCAATGATTTCGTGAAAATTGGTATGGAACTGTGGCAGACAGCCCAGCCG TACCTTGTACAAGCTCTGGGACTTCAACCACCTCCCCCCAAGGTGGACGTAGATGCCGCT GTTGCAAATGCGGGGGATGCTCACGGCGAACAACCATGGGTCGCGACACCTCTTCCTGGC CAAACAGTTCGAGCTTTATTTATTGGAATTAATTACTATGGAACTTCCGCAGCGCTCTCC GGTTGCTGCAATGATGTCAAGCAAATGCTCGCCACACTGCAGAAAAAGGGGCTCCCAATC AACGAAGCCGTCATACTCGTCGACGAGGACAATTTCCCCGGGAGGACCGACCAGCCAACC CGCGACAATATCGTACGTTACATGGCGTGGCTCGTGAAGGATGCAAAACCAGGTGATGTC CTTTTCTTCCATTACTCTGGTCATGGTACACAATGCAAATCCAGAGGCGACAGTGACGAG AAGTACGATCAATGCATTGCCCCTGTGGACTTCCAGAAAAGTGGATGCATTGTTGATGAT GATATACACAAACTTCTCTTCTCTAGGCTTCCTGAAAAGGTACGACTCACAGCTGTGTTC GATTGTTGCCACTCAGGTTCTATTATGGATCTTCCTTTTACCTATGTCTGCAGTGGAGGT GAGCAAGCATCGGGTACGCCACACATGAAGCGAATTCGTGAGGGAAATGATGTTCTGGGG GATGTGATGATGATTTCTGGTTGTGCTGATGAGCAAACATCTGCTGATGTTAAGAATACT GCCACATTTGGTACGGGTTCTACAGGCGCTGGTGGTGCGGCCACGCAGTGTATCACGTGC ATGCTTATGAACAACCAGTCGTTGTCGTATGGTAAACTTCTAATCGAAACTCGCGACATG TTGAAGAGGAAAGGATTCAAACAAGTGCCACAGCTCAGTGCTTCAAAAGCTATAGACCTT GATCAGACCTTCTCACTAACGGAAATGTTTTCTGTTGACAGATCTGTCCAATAG
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  • Fasta :-

    MAVDPRCLLSLCSTISKASSAKGTNDFVKIGMELWQTAQPYLVQALGLQPPPPKVDVDAA VANAGDAHGEQPWVATPLPGQTVRALFIGINYYGTSAALSGCCNDVKQMLATLQKKGLPI NEAVILVDEDNFPGRTDQPTRDNIVRYMAWLVKDAKPGDVLFFHYSGHGTQCKSRGDSDE KYDQCIAPVDFQKSGCIVDDDIHKLLFSRLPEKVRLTAVFDCCHSGSIMDLPFTYVCSGG EQASGTPHMKRIREGNDVLGDVMMISGCADEQTSADVKNTATFGTGSTGAGGAATQCITC MLMNNQSLSYGKLLIETRDMLKRKGFKQVPQLSASKAIDLDQTFSLTEMFSVDRSVQ

    No Results
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No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
Tbg972.6.700178 SSRGDSDEKY0.997unspTbg972.6.700178 SSRGDSDEKY0.997unspTbg972.6.700178 SSRGDSDEKY0.997unspTbg972.6.70020 SSKASSAKGT0.996unspTbg972.6.700174 STQCKSRGDS0.995unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India