Tbg972.7.6890 | Autophagy-related protein 8.2

  • Computed_GO_Component_IDs:        

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  • Curated_GO_Component_IDs:  GO:0005776      GO:0005737      GO:0000407      

  • Curated_GO_Components:  autophagosome      cytoplasm      phagophore assembly site      

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_IDPredictionOTHERSPmTPCS_Position
Tbg972.7.6890OTHER0.9997990.0000250.000176
No Results

  • Fasta :-

    >Tbg972.7.6890 MSKKDSKYKMSHTFESRQSDAAKVRERHPDRLPIICEKVYNSDIGELDRCKFLVPSDLTV GQFVSVLRKRVQLEAESALFVYTNDTVLPSSAQMADIYSKYKDEDGFLYMKYSGEATFGC
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/212 Sequence name : 212 Sequence length : 120 VALUES OF COMPUTED PARAMETERS Coef20 : 3.631 CoefTot : -0.114 ChDiff : 0 ZoneTo : 4 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.429 1.094 -0.055 0.414 MesoH : -1.218 0.092 -0.497 0.086 MuHd_075 : 23.854 14.069 7.042 5.250 MuHd_095 : 8.793 5.629 3.302 0.122 MuHd_100 : 7.680 3.847 3.254 1.426 MuHd_105 : 6.007 4.251 2.374 1.611 Hmax_075 : -7.350 -1.400 -4.859 0.770 Hmax_095 : -11.200 -7.875 -6.402 -2.100 Hmax_100 : -11.600 -6.000 -5.503 -2.260 Hmax_105 : -10.267 -8.700 -6.296 -1.930 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9804 0.0196 DFMC : 0.9439 0.0561
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 120 Tbg972.7.6890 MSKKDSKYKMSHTFESRQSDAAKVRERHPDRLPIICEKVYNSDIGELDRCKFLVPSDLTVGQFVSVLRKRVQLEAESALF 80 VYTNDTVLPSSAQMADIYSKYKDEDGFLYMKYSGEATFGC 160 ................................................................................ 80 ........................................ 160 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ Tbg972.7.6890 3 ----MSK|KD 0.066 . Tbg972.7.6890 4 ---MSKK|DS 0.144 . Tbg972.7.6890 7 MSKKDSK|YK 0.069 . Tbg972.7.6890 9 KKDSKYK|MS 0.079 . Tbg972.7.6890 17 SHTFESR|QS 0.093 . Tbg972.7.6890 23 RQSDAAK|VR 0.079 . Tbg972.7.6890 25 SDAAKVR|ER 0.103 . Tbg972.7.6890 27 AAKVRER|HP 0.085 . Tbg972.7.6890 31 RERHPDR|LP 0.097 . Tbg972.7.6890 38 LPIICEK|VY 0.060 . Tbg972.7.6890 49 DIGELDR|CK 0.076 . Tbg972.7.6890 51 GELDRCK|FL 0.066 . Tbg972.7.6890 68 QFVSVLR|KR 0.076 . Tbg972.7.6890 69 FVSVLRK|RV 0.092 . Tbg972.7.6890 70 VSVLRKR|VQ 0.153 . Tbg972.7.6890 100 MADIYSK|YK 0.065 . Tbg972.7.6890 102 DIYSKYK|DE 0.077 . Tbg972.7.6890 111 DGFLYMK|YS 0.071 . ____________________________^_________________

  • Fasta :-

    >Tbg972.7.6890 ATGAGTAAAAAAGATAGCAAGTACAAAATGAGCCACACCTTTGAGAGCCGACAGTCGGAT GCCGCAAAGGTGCGTGAGAGGCATCCGGATCGTTTGCCCATCATATGTGAAAAGGTGTAT AACTCCGATATTGGTGAGTTAGACAGGTGTAAATTTCTCGTCCCATCTGATCTAACGGTC GGACAGTTTGTCAGCGTGCTACGCAAACGTGTGCAGCTGGAAGCCGAATCTGCACTCTTC GTTTATACCAATGACACAGTACTCCCCTCCAGTGCGCAAATGGCGGACATTTACTCCAAA TATAAGGATGAAGACGGTTTCCTATACATGAAATATTCAGGTGAGGCGACATTTGGATGC TAA
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  • Fasta :-

    MSKKDSKYKMSHTFESRQSDAAKVRERHPDRLPIICEKVYNSDIGELDRCKFLVPSDLTV GQFVSVLRKRVQLEAESALFVYTNDTVLPSSAQMADIYSKYKDEDGFLYMKYSGEATFGC

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Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India