YBL067C | ubiquitin-specific protease UBP13

UniProt_ID: P38187

Computed_GO_Component_IDs: GO:0005623
Computed_GO_Components: cell
Computed_GO_Function_IDs: GO:0008234 GO:0016787 GO:0008233 GO:0036459
Computed_GO_Functions: cysteine-type peptidase activity hydrolase activity peptidase activity thiol-dependent ubiquitinyl hydrolase activity
Computed_GO_Process_IDs: GO:0016579 GO:0006508 GO:0006511
Computed_GO_Processes: protein deubiquitination proteolysis ubiquitin-dependent protein catabolic process
Curated_GO_Component_IDs: GO:0005575
Curated_GO_Components: cellular_component
Curated_GO_Function_IDs: GO:0004197 GO:0004843
Curated_GO_Functions: cysteine-type endopeptidase activity thiol-dependent ubiquitin-specific protease activity
Curated_GO_Processes: free ubiquitin chain depolymerization proteasome-mediated ubiquitin-dependent protein catabolic process protein deubiquitination regulation of proteasomal protein catabolic process

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	YBL067C	OTHER	0.998746	0.000120	0.001134

No Results

Fasta :-
>YBL067C MIRRWLTISKSGKKKKAVNDTITEEVEKVDFKPVNHDINDELCYSESSDNPSSSLFVSNL DTKETFLNEDNNLQISSGLDYSSETCNQGSNYSQDGIFYISNAKAINAYGGIITQGPEAP ILAMKVSDSMPYGDGSNKVFGYENFGNTCYCNSVLQCLYNLSSLRENILQFPKKSRESDQ PRKKEMRGKKPRIFTEASFEKSIAGTNGHLPNPKPQSVDDGKPTPVNSVNSNTAGPSEKK SKFFKSFSAKHVQDNNKKEGSPAILTTGKPSSRPQDAPPLIVETPNEPGAPSRLSFENVT DRPPDVPRKIIVGRVLNYENPSRGSSNSNNLDLKGESNSSLSTPLDKKDTRRSSSSSQIS PEHRKKSALIRGPVLNIDHSLNGSDKATLYSSLRDIFECITENTYLTGVVSPSSFVDVLK RENVLFNTTMHQDAHEFFNFLLNELSEYIERENKKIAASDINSDSEPSKSKNFISDLFQG TLTNQIKCLTCDNITSRDEPFLDFPIEVQGDEETDIQEILKSYHQREMLNGSNKFYCDEC CGLQEAERLVGLKQLPDTLTLHLKRFKYSEKQNCNIKLFNNIHYPLTLNVCSSINSKVCQ KYELAGIVVHMGGGPQHGHYVSLCKHEKFGWLLFDDETVEAVKEETVLEFTGESPNMATA YVLFYKAMYSNAVEKNDRENMAKEQDDNIDNLIKYDDWLRTCNSGQKKKEELPIADDLDT AIDDSFVSNTPIKSSKKKSRMFSFRKS
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/YBL067C.fa Sequence name : YBL067C Sequence length : 747 VALUES OF COMPUTED PARAMETERS Coef20 : 4.272 CoefTot : -0.192 ChDiff : -11 ZoneTo : 19 KR : 7 DE : 0 CleavSite : 14 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.653 0.918 0.096 0.488 MesoH : -0.439 0.067 -0.326 0.207 MuHd_075 : 27.139 17.220 9.219 5.681 MuHd_095 : 20.618 12.329 4.191 5.327 MuHd_100 : 22.250 7.293 4.194 5.335 MuHd_105 : 30.075 14.018 6.885 7.311 Hmax_075 : -0.117 4.813 -1.685 1.458 Hmax_095 : -7.600 1.575 -5.125 0.750 Hmax_100 : 4.300 4.900 -1.752 3.050 Hmax_105 : 4.300 4.900 -1.752 3.050 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0832 0.9168 DFMC : 0.1487 0.8513 This protein is probably imported in mitochondria. f(Ser) = 0.1053 f(Arg) = 0.1053 CMi = 0.48426 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 747 YBL067C MIRRWLTISKSGKKKKAVNDTITEEVEKVDFKPVNHDINDELCYSESSDNPSSSLFVSNLDTKETFLNEDNNLQISSGLD 80 YSSETCNQGSNYSQDGIFYISNAKAINAYGGIITQGPEAPILAMKVSDSMPYGDGSNKVFGYENFGNTCYCNSVLQCLYN 160 LSSLRENILQFPKKSRESDQPRKKEMRGKKPRIFTEASFEKSIAGTNGHLPNPKPQSVDDGKPTPVNSVNSNTAGPSEKK 240 SKFFKSFSAKHVQDNNKKEGSPAILTTGKPSSRPQDAPPLIVETPNEPGAPSRLSFENVTDRPPDVPRKIIVGRVLNYEN 320 PSRGSSNSNNLDLKGESNSSLSTPLDKKDTRRSSSSSQISPEHRKKSALIRGPVLNIDHSLNGSDKATLYSSLRDIFECI 400 TENTYLTGVVSPSSFVDVLKRENVLFNTTMHQDAHEFFNFLLNELSEYIERENKKIAASDINSDSEPSKSKNFISDLFQG 480 TLTNQIKCLTCDNITSRDEPFLDFPIEVQGDEETDIQEILKSYHQREMLNGSNKFYCDECCGLQEAERLVGLKQLPDTLT 560 LHLKRFKYSEKQNCNIKLFNNIHYPLTLNVCSSINSKVCQKYELAGIVVHMGGGPQHGHYVSLCKHEKFGWLLFDDETVE 640 AVKEETVLEFTGESPNMATAYVLFYKAMYSNAVEKNDRENMAKEQDDNIDNLIKYDDWLRTCNSGQKKKEELPIADDLDT 720 AIDDSFVSNTPIKSSKKKSRMFSFRKS 800 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ................................................................................ 720 ........................... 800 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ YBL067C 3 ----MIR|RW 0.079 . YBL067C 4 ---MIRR|WL 0.160 . YBL067C 10 RWLTISK|SG 0.066 . YBL067C 13 TISKSGK|KK 0.093 . YBL067C 14 ISKSGKK|KK 0.077 . YBL067C 15 SKSGKKK|KA 0.159 . YBL067C 16 KSGKKKK|AV 0.315 . YBL067C 28 ITEEVEK|VD 0.057 . YBL067C 32 VEKVDFK|PV 0.078 . YBL067C 63 VSNLDTK|ET 0.067 . YBL067C 104 FYISNAK|AI 0.065 . YBL067C 125 APILAMK|VS 0.063 . YBL067C 138 YGDGSNK|VF 0.061 . YBL067C 165 YNLSSLR|EN 0.074 . YBL067C 173 NILQFPK|KS 0.057 . YBL067C 174 ILQFPKK|SR 0.175 . YBL067C 176 QFPKKSR|ES 0.100 . YBL067C 182 RESDQPR|KK 0.117 . YBL067C 183 ESDQPRK|KE 0.069 . YBL067C 184 SDQPRKK|EM 0.111 . YBL067C 187 PRKKEMR|GK 0.136 . YBL067C 189 KKEMRGK|KP 0.067 . YBL067C 190 KEMRGKK|PR 0.286 . YBL067C 192 MRGKKPR|IF 0.147 . YBL067C 201 TEASFEK|SI 0.098 . YBL067C 214 GHLPNPK|PQ 0.062 . YBL067C 222 QSVDDGK|PT 0.063 . YBL067C 239 TAGPSEK|KS 0.059 . YBL067C 240 AGPSEKK|SK 0.105 . YBL067C 242 PSEKKSK|FF 0.067 . YBL067C 245 KKSKFFK|SF 0.179 . YBL067C 250 FKSFSAK|HV 0.130 . YBL067C 257 HVQDNNK|KE 0.060 . YBL067C 258 VQDNNKK|EG 0.100 . YBL067C 269 AILTTGK|PS 0.064 . YBL067C 273 TGKPSSR|PQ 0.086 . YBL067C 293 EPGAPSR|LS 0.095 . YBL067C 302 FENVTDR|PP 0.086 . YBL067C 308 RPPDVPR|KI 0.122 . YBL067C 309 PPDVPRK|II 0.079 . YBL067C 314 RKIIVGR|VL 0.107 . YBL067C 323 NYENPSR|GS 0.088 . YBL067C 334 SNNLDLK|GE 0.067 . YBL067C 347 LSTPLDK|KD 0.055 . YBL067C 348 STPLDKK|DT 0.101 . YBL067C 351 LDKKDTR|RS 0.082 . YBL067C 352 DKKDTRR|SS 0.328 . YBL067C 364 QISPEHR|KK 0.124 . YBL067C 365 ISPEHRK|KS 0.075 . YBL067C 366 SPEHRKK|SA 0.219 . YBL067C 371 KKSALIR|GP 0.114 . YBL067C 386 SLNGSDK|AT 0.063 . YBL067C 394 TLYSSLR|DI 0.121 . YBL067C 420 SFVDVLK|RE 0.064 . YBL067C 421 FVDVLKR|EN 0.113 . YBL067C 451 LSEYIER|EN 0.079 . YBL067C 454 YIERENK|KI 0.104 . YBL067C 455 IERENKK|IA 0.114 . YBL067C 469 SDSEPSK|SK 0.096 . YBL067C 471 SEPSKSK|NF 0.066 . YBL067C 487 TLTNQIK|CL 0.067 . YBL067C 497 CDNITSR|DE 0.081 . YBL067C 521 DIQEILK|SY 0.084 . YBL067C 526 LKSYHQR|EM 0.129 . YBL067C 534 MLNGSNK|FY 0.085 . YBL067C 548 GLQEAER|LV 0.104 . YBL067C 553 ERLVGLK|QL 0.066 . YBL067C 564 TLTLHLK|RF 0.067 . YBL067C 565 LTLHLKR|FK 0.143 . YBL067C 567 LHLKRFK|YS 0.075 . YBL067C 571 RFKYSEK|QN 0.065 . YBL067C 577 KQNCNIK|LF 0.060 . YBL067C 597 CSSINSK|VC 0.067 . YBL067C 601 NSKVCQK|YE 0.067 . YBL067C 625 HYVSLCK|HE 0.058 . YBL067C 628 SLCKHEK|FG 0.068 . YBL067C 643 ETVEAVK|EE 0.057 . YBL067C 666 AYVLFYK|AM 0.060 . YBL067C 675 YSNAVEK|ND 0.066 . YBL067C 678 AVEKNDR|EN 0.090 . YBL067C 683 DRENMAK|EQ 0.081 . YBL067C 694 NIDNLIK|YD 0.062 . YBL067C 700 KYDDWLR|TC 0.070 . YBL067C 707 TCNSGQK|KK 0.062 . YBL067C 708 CNSGQKK|KE 0.099 . YBL067C 709 NSGQKKK|EE 0.110 . YBL067C 733 VSNTPIK|SS 0.098 . YBL067C 736 TPIKSSK|KK 0.076 . YBL067C 737 PIKSSKK|KS 0.077 . YBL067C 738 IKSSKKK|SR 0.265 . YBL067C 740 SSKKKSR|MF 0.134 . YBL067C 745 SRMFSFR|KS 0.144 . YBL067C 746 RMFSFRK|S- 0.125 . ____________________________^_________________

Fasta :-
>YBL067C ATGATCAGAAGATGGCTAACTATAAGTAAGTCTGGGAAGAAGAAAAAGGCTGTTAATGAT ACCATTACAGAAGAAGTAGAAAAGGTTGACTTTAAGCCTGTAAACCACGATATAAATGAT GAACTCTGTTATAGCGAATCATCCGATAATCCCTCTAGCTCATTGTTTGTCTCTAATTTG GATACCAAGGAAACTTTTTTGAATGAAGACAATAATTTGCAGATTTCTTCCGGACTAGAC TATTCTTCTGAAACGTGCAATCAAGGCAGTAATTACAGCCAGGATGGGATATTTTATATT TCAAACGCAAAGGCTATAAACGCATACGGAGGCATTATCACGCAAGGGCCCGAGGCACCC ATATTAGCTATGAAGGTGTCCGACTCAATGCCCTATGGAGACGGCTCCAACAAAGTTTTT GGATACGAAAATTTTGGCAATACATGTTACTGTAACTCAGTTCTTCAATGTCTCTATAAT CTGTCCTCATTACGTGAAAATATATTGCAATTTCCAAAAAAATCAAGAGAATCTGATCAA CCAAGAAAGAAAGAAATGAGAGGTAAGAAACCAAGAATATTTACCGAAGCAAGTTTTGAG AAAAGCATTGCTGGTACCAATGGACATTTGCCTAACCCTAAACCTCAATCTGTTGATGAT GGAAAGCCTACCCCTGTAAATTCTGTAAATTCAAATACAGCTGGGCCTTCAGAGAAGAAG AGTAAATTTTTTAAAAGTTTTAGCGCGAAACATGTACAAGACAATAATAAAAAGGAAGGA AGTCCTGCTATATTAACCACTGGAAAACCCTCTTCTCGTCCTCAAGACGCACCTCCATTG ATAGTCGAAACACCTAATGAGCCTGGTGCTCCGAGCAGATTGAGTTTCGAGAACGTCACA GATAGACCTCCGGATGTTCCGCGTAAAATAATTGTTGGCAGAGTTCTCAATTATGAAAAT CCTTCAAGAGGTAGCAGTAATAGTAATAACCTGGACTTGAAAGGAGAAAGTAATAGCAGC TTATCCACTCCACTTGATAAAAAAGATACTAGAAGATCTAGTTCCTCTTCTCAAATATCC CCAGAACATAGAAAGAAATCCGCACTTATTCGTGGGCCAGTGCTCAATATTGACCATAGC TTAAACGGCTCAGATAAGGCTACTTTGTATTCCAGTTTGAGAGATATCTTTGAATGCATA ACTGAGAATACGTATTTAACTGGTGTTGTATCGCCTAGCTCTTTTGTTGATGTTCTCAAA AGAGAAAATGTATTATTTAATACTACTATGCATCAGGATGCTCACGAATTTTTCAATTTC TTATTAAACGAGTTGAGTGAATATATAGAACGTGAGAATAAAAAAATAGCAGCCAGTGAT ATCAACAGCGATAGCGAACCGAGTAAGAGTAAAAATTTCATCAGTGACTTGTTTCAAGGC ACTTTAACGAATCAAATAAAATGTCTGACGTGCGATAACATTACATCTAGGGATGAGCCA TTTTTGGATTTCCCCATAGAAGTTCAGGGAGATGAGGAAACAGATATACAGGAAATTTTG AAAAGTTATCACCAGCGAGAAATGCTAAATGGCTCAAACAAGTTTTATTGTGACGAATGT TGCGGTTTACAGGAGGCAGAGAGATTAGTTGGTTTGAAGCAATTGCCTGATACTTTAACA TTACACTTGAAAAGATTCAAGTATTCTGAGAAACAAAACTGTAATATTAAGCTTTTTAAT AACATTCACTATCCTCTGACGCTAAATGTTTGCTCTTCAATAAATTCTAAGGTTTGTCAA AAGTATGAATTGGCTGGGATTGTCGTTCATATGGGCGGTGGGCCACAACACGGCCATTAT GTTTCCCTATGTAAACATGAAAAGTTTGGCTGGTTGTTATTTGATGACGAAACGGTAGAG GCAGTTAAAGAGGAAACAGTGTTAGAATTCACAGGTGAATCTCCAAATATGGCAACAGCA TATGTTTTGTTTTATAAAGCGATGTATTCAAACGCTGTTGAAAAGAATGATCGTGAAAAT ATGGCAAAAGAACAAGATGATAATATAGACAATCTAATCAAGTACGATGATTGGCTAAGA ACTTGCAATAGTGGTCAAAAGAAAAAGGAAGAGCTGCCTATAGCAGACGATTTGGATACT GCTATAGACGACAGCTTTGTTTCTAACACACCCATAAAGTCTTCTAAAAAAAAGTCGAGA ATGTTTAGTTTTAGGAAAAGCTGA
Download Fasta

Fasta :-

MIRRWLTISKSGKKKKAVNDTITEEVEKVDFKPVNHDINDELCYSESSDNPSSSLFVSNL DTKETFLNEDNNLQISSGLDYSSETCNQGSNYSQDGIFYISNAKAINAYGGIITQGPEAP ILAMKVSDSMPYGDGSNKVFGYENFGNTCYCNSVLQCLYNLSSLRENILQFPKKSRESDQ PRKKEMRGKKPRIFTEASFEKSIAGTNGHLPNPKPQSVDDGKPTPVNSVNSNTAGPSEKK SKFFKSFSAKHVQDNNKKEGSPAILTTGKPSSRPQDAPPLIVETPNEPGAPSRLSFENVT DRPPDVPRKIIVGRVLNYENPSRGSSNSNNLDLKGESNSSLSTPLDKKDTRRSSSSSQIS PEHRKKSALIRGPVLNIDHSLNGSDKATLYSSLRDIFECITENTYLTGVVSPSSFVDVLK RENVLFNTTMHQDAHEFFNFLLNELSEYIERENKKIAASDINSDSEPSKSKNFISDLFQG TLTNQIKCLTCDNITSRDEPFLDFPIEVQGDEETDIQEILKSYHQREMLNGSNKFYCDEC CGLQEAERLVGLKQLPDTLTLHLKRFKYSEKQNCNIKLFNNIHYPLTLNVCSSINSKVCQ KYELAGIVVHMGGGPQHGHYVSLCKHEKFGWLLFDDETVEAVKEETVLEFTGESPNMATA YVLFYKAMYSNAVEKNDRENMAKEQDDNIDNLIKYDDWLRTCNSGQKKKEELPIADDLDT AIDDSFVSNTPIKSSKKKSRMFSFRKS

Ubiquitin carboxyl-terminal hydrolase, UCH

No Results

	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore
	YBL067C	T	284	0.527	0.095	YBL067C	T	224	0.511	0.188

	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore
	YBL067C	T	284	0.527	0.095	YBL067C	T	224	0.511	0.188

	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method
	YBL067C	271 S	TGKPSSRPQ	0.995	unsp	YBL067C	271 S	TGKPSSRPQ	0.995	unsp	YBL067C	271 S	TGKPSSRPQ	0.995	unsp	YBL067C	295 S	PSRLSFENV	0.991	unsp	YBL067C	353 S	DTRRSSSSS	0.993	unsp	YBL067C	354 S	TRRSSSSSQ	0.997	unsp	YBL067C	355 S	RRSSSSSQI	0.994	unsp	YBL067C	357 S	SSSSSQISP	0.995	unsp	YBL067C	360 S	SSQISPEHR	0.995	unsp	YBL067C	392 S	TLYSSLRDI	0.994	unsp	YBL067C	735 S	PIKSSKKKS	0.995	unsp	YBL067C	178 S	KSRESDQPR	0.992	unsp	YBL067C	217 S	PKPQSVDDG	0.994	unsp

YBL067C | ubiquitin-specific protease UBP13

ID's

UniProt_ID: P38187

GEO Functions

Computed_GO_Component_IDs: GO:0005623

Computed_GO_Components: cell

Computed_GO_Function_IDs: GO:0008234 GO:0016787 GO:0008233 GO:0036459

Computed_GO_Functions: cysteine-type peptidase activity hydrolase activity peptidase activity thiol-dependent ubiquitinyl hydrolase activity

Computed_GO_Process_IDs: GO:0016579 GO:0006508 GO:0006511

Computed_GO_Processes: protein deubiquitination proteolysis ubiquitin-dependent protein catabolic process

Curated_GO_Component_IDs: GO:0005575

Curated_GO_Components: cellular_component

Curated_GO_Function_IDs: GO:0004197 GO:0004843

Curated_GO_Functions: cysteine-type endopeptidase activity thiol-dependent ubiquitin-specific protease activity

Curated_GO_Processes: free ubiquitin chain depolymerization proteasome-mediated ubiquitin-dependent protein catabolic process protein deubiquitination regulation of proteasomal protein catabolic process

Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

Ubiquitin carboxyl-terminal hydrolase, UCH

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

YBL067C

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India