YBR201W | Der1p

UniProt_ID: P38307

Computed_GO_Component_IDs: GO:0005783 GO:0005789 GO:0016021 GO:0016020
Computed_GO_Components: endoplasmic reticulum endoplasmic reticulum membrane integral component of membrane membrane
Computed_GO_Function_IDs:
Computed_GO_Functions:
Computed_GO_Process_IDs: GO:0015031 GO:0006810
Computed_GO_Processes: protein transport transport
Curated_GO_Component_IDs: GO:0000839 GO:0005789 GO:0016021
Curated_GO_Components: Hrd1p ubiquitin ligase ERAD-L complex endoplasmic reticulum membrane integral component of membrane
Curated_GO_Function_IDs: GO:0051787
Curated_GO_Functions: misfolded protein binding
Curated_GO_Processes: misfolded protein transport retrograde protein transport, ER to cytosol ubiquitin-dependent ERAD pathway

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	YBR201W	OTHER	0.969673	0.028218	0.002109

No Results

Fasta :-
>YBR201W MDAVILNLLGDIPLVTRLWTIGCLVLSGLTSLRIVDPGKVVYSYDLVFKKGQYGRLLYSI FDYGAFNWISMINIFVSANHLSTLENSFNLRRKFCWIIFLLLVILVKMTSIEQPAASLGV LLHENLVYYELKKNGNQMNVRFFGAIDVSPSIFPIYMNAVMYFVYKRSWLEIAMNFMPGH VIYYMDDIIGKIYGIDLCKSPYDWFRNTETP
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/YBR201W.fa Sequence name : YBR201W Sequence length : 211 VALUES OF COMPUTED PARAMETERS Coef20 : 4.230 CoefTot : 0.000 ChDiff : 2 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.965 2.500 0.360 0.789 MesoH : 0.107 0.837 -0.198 0.369 MuHd_075 : 35.468 23.061 9.659 7.298 MuHd_095 : 19.435 12.236 4.798 3.533 MuHd_100 : 22.529 18.297 5.688 5.451 MuHd_105 : 18.787 20.088 5.388 5.893 Hmax_075 : 18.317 23.450 4.456 7.327 Hmax_095 : 19.000 22.400 4.060 6.690 Hmax_100 : 19.000 22.400 4.060 6.690 Hmax_105 : 8.600 19.200 1.742 5.840 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9417 0.0583 DFMC : 0.9552 0.0448

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 211 YBR201W MDAVILNLLGDIPLVTRLWTIGCLVLSGLTSLRIVDPGKVVYSYDLVFKKGQYGRLLYSIFDYGAFNWISMINIFVSANH 80 LSTLENSFNLRRKFCWIIFLLLVILVKMTSIEQPAASLGVLLHENLVYYELKKNGNQMNVRFFGAIDVSPSIFPIYMNAV 160 MYFVYKRSWLEIAMNFMPGHVIYYMDDIIGKIYGIDLCKSPYDWFRNTETP 240 ................................................................................ 80 ................................................................................ 160 ................................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ YBR201W 17 DIPLVTR|LW 0.073 . YBR201W 33 SGLTSLR|IV 0.127 . YBR201W 39 RIVDPGK|VV 0.070 . YBR201W 49 SYDLVFK|KG 0.058 . YBR201W 50 YDLVFKK|GQ 0.093 . YBR201W 55 KKGQYGR|LL 0.106 . YBR201W 91 ENSFNLR|RK 0.081 . YBR201W 92 NSFNLRR|KF 0.125 . YBR201W 93 SFNLRRK|FC 0.113 . YBR201W 107 LLVILVK|MT 0.073 . YBR201W 132 LVYYELK|KN 0.072 . YBR201W 133 VYYELKK|NG 0.079 . YBR201W 141 GNQMNVR|FF 0.155 . YBR201W 166 VMYFVYK|RS 0.064 . YBR201W 167 MYFVYKR|SW 0.297 . YBR201W 191 MDDIIGK|IY 0.066 . YBR201W 199 YGIDLCK|SP 0.072 . YBR201W 206 SPYDWFR|NT 0.122 . ____________________________^_________________

Fasta :-
>YBR201W ATGGATGCTGTAATACTGAATCTCTTAGGCGACATTCCTTTGGTCACAAGATTATGGACA ATTGGCTGTCTTGTACTATCAGGTCTCACAAGTCTCCGGATTGTGGATCCAGGGAAGGTA GTGTACAGTTATGATTTAGTATTCAAAAAGGGACAATATGGAAGACTACTTTATTCGATA TTCGATTACGGCGCATTTAATTGGATATCCATGATAAACATCTTTGTCAGCGCTAATCAC TTATCAACTTTGGAAAACTCATTCAATCTGAGAAGAAAATTCTGTTGGATAATATTTTTA CTGTTGGTGATACTGGTAAAGATGACCAGCATTGAACAACCTGCAGCATCACTCGGTGTG TTATTGCATGAGAATCTCGTGTACTACGAACTGAAAAAGAACGGAAACCAAATGAACGTA CGATTCTTCGGTGCCATTGATGTTTCACCATCTATATTCCCAATCTACATGAATGCAGTA ATGTATTTTGTATATAAGCGTAGCTGGTTAGAAATTGCCATGAATTTCATGCCAGGTCAC GTAATTTACTACATGGATGATATAATAGGGAAGATTTATGGCATCGATTTGTGTAAATCT CCGTACGACTGGTTCCGCAACACTGAAACACCCTAA
Download Fasta

Fasta :-

MDAVILNLLGDIPLVTRLWTIGCLVLSGLTSLRIVDPGKVVYSYDLVFKKGQYGRLLYSI FDYGAFNWISMINIFVSANHLSTLENSFNLRRKFCWIIFLLLVILVKMTSIEQPAASLGV LLHENLVYYELKKNGNQMNVRFFGAIDVSPSIFPIYMNAVMYFVYKRSWLEIAMNFMPGH VIYYMDDIIGKIYGIDLCKSPYDWFRNTETP

No Results

	ID	Site	Position	Gscore	Iscore
	YBR201W	T	210	0.523	0.029

	ID	Site	Position	Gscore	Iscore
	YBR201W	T	210	0.523	0.029

	ID	Site	Peptide	Score	Method
	YBR201W	200 S	DLCKSPYDW	0.997	unsp

YBR201W | Der1p

ID's

UniProt_ID: P38307

GEO Functions

Computed_GO_Component_IDs: GO:0005783 GO:0005789 GO:0016021 GO:0016020

Computed_GO_Components: endoplasmic reticulum endoplasmic reticulum membrane integral component of membrane membrane

Computed_GO_Function_IDs:

Computed_GO_Functions:

Computed_GO_Process_IDs: GO:0015031 GO:0006810

Computed_GO_Processes: protein transport transport

Curated_GO_Component_IDs: GO:0000839 GO:0005789 GO:0016021

Curated_GO_Components: Hrd1p ubiquitin ligase ERAD-L complex endoplasmic reticulum membrane integral component of membrane

Curated_GO_Function_IDs: GO:0051787

Curated_GO_Functions: misfolded protein binding

Curated_GO_Processes: misfolded protein transport retrograde protein transport, ER to cytosol ubiquitin-dependent ERAD pathway

Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

YBR201W

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India