YDR258C | chaperone ATPase HSP78

_IDPredictionOTHERSPmTPCS_Position
YDR258COTHER0.6729000.0000530.327047
No Results

  • Fasta :-

    >YDR258C MLRQATKAPIQKYLQRTQLLRRSTPRIYTIVQCKRSICSFNARPRVANKLLSDIKTNALN EVAISTCALKSSYGLPNFKRTYVQMRMDPNQQPEKPALEQFGTNLTKLARDGKLDPVIGR DEEIARAIQILSRRTKNNPCLIGRAGVGKTALIDGLAQRIVAGEVPDSLKDKDLVALDLG SLIAGAKYRGEFEERLKKVLEEIDKANGKVIVFIDEVHMLLGLGKTDGSMDASNILKPKL ARGLRCISATTLDEFKIIEKDPALSRRFQPILLNEPSVSDTISILRGLKERYEVHHGVRI TDTALVSAAVLSNRYITDRFLPDKAIDLVDEACAVLRLQHESKPDEIQKLDRAIMKIQIE LESLKKETDPVSVERREALEKDLEMKNDELNRLTKIWDAERAEIESIKNAKANLEQARIE LEKCQREGDYTKASELRYSRIPDLEKKVALSEKSKDGDKVNLLHDSVTSDDISKVVAKMT GIPTETVMKGDKDRLLYMENSLKERVVGQDEAIAAISDAVRLQRAGLTSEKRPIASFMFL GPTGTGKTELTKALAEFLFDDESNVIRFDMSEFQEKHTVSRLIGAPPGYVLSESGGQLTE AVRRKPYAVVLFDEFEKAHPDVSKLLLQVLDEGKLTDSLGHHVDFRNTIIVMTSNIGQDI LLNDTKLGDDGKIDTATKNKVIEAMKRSYPPEFINRIDDILVFNRLSKKVLRSIVDIRIA EIQDRLAEKRMKIDLTDEAKDWLTDKGYDQLYGARPLNRLIHRQILNSMATFLLKGQIRN GETVRVVVKDTKLVVLPNHEEGEVVEEEAEK
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/YDR258C.fa Sequence name : YDR258C Sequence length : 811 VALUES OF COMPUTED PARAMETERS Coef20 : 4.203 CoefTot : 0.256 ChDiff : 3 ZoneTo : 52 KR : 12 DE : 0 CleavSite : 45 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.653 1.318 -0.023 0.538 MesoH : -0.956 0.214 -0.492 0.131 MuHd_075 : 56.381 29.295 13.633 12.797 MuHd_095 : 33.216 22.532 9.965 8.292 MuHd_100 : 34.554 25.683 9.846 7.813 MuHd_105 : 40.322 28.907 11.321 9.321 Hmax_075 : 8.400 10.267 0.256 3.920 Hmax_095 : 10.850 16.100 1.296 4.730 Hmax_100 : -1.600 15.500 -0.736 1.560 Hmax_105 : -0.875 14.500 -0.748 1.430 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0019 0.9981 DFMC : 0.0026 0.9974 This protein is probably imported in mitochondria. f(Ser) = 0.0769 f(Arg) = 0.1538 CMi = 0.26954 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 811 YDR258C MLRQATKAPIQKYLQRTQLLRRSTPRIYTIVQCKRSICSFNARPRVANKLLSDIKTNALNEVAISTCALKSSYGLPNFKR 80 TYVQMRMDPNQQPEKPALEQFGTNLTKLARDGKLDPVIGRDEEIARAIQILSRRTKNNPCLIGRAGVGKTALIDGLAQRI 160 VAGEVPDSLKDKDLVALDLGSLIAGAKYRGEFEERLKKVLEEIDKANGKVIVFIDEVHMLLGLGKTDGSMDASNILKPKL 240 ARGLRCISATTLDEFKIIEKDPALSRRFQPILLNEPSVSDTISILRGLKERYEVHHGVRITDTALVSAAVLSNRYITDRF 320 LPDKAIDLVDEACAVLRLQHESKPDEIQKLDRAIMKIQIELESLKKETDPVSVERREALEKDLEMKNDELNRLTKIWDAE 400 RAEIESIKNAKANLEQARIELEKCQREGDYTKASELRYSRIPDLEKKVALSEKSKDGDKVNLLHDSVTSDDISKVVAKMT 480 GIPTETVMKGDKDRLLYMENSLKERVVGQDEAIAAISDAVRLQRAGLTSEKRPIASFMFLGPTGTGKTELTKALAEFLFD 560 DESNVIRFDMSEFQEKHTVSRLIGAPPGYVLSESGGQLTEAVRRKPYAVVLFDEFEKAHPDVSKLLLQVLDEGKLTDSLG 640 HHVDFRNTIIVMTSNIGQDILLNDTKLGDDGKIDTATKNKVIEAMKRSYPPEFINRIDDILVFNRLSKKVLRSIVDIRIA 720 EIQDRLAEKRMKIDLTDEAKDWLTDKGYDQLYGARPLNRLIHRQILNSMATFLLKGQIRNGETVRVVVKDTKLVVLPNHE 800 EGEVVEEEAEK 880 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ................................................................................ 720 ................................................................................ 800 ........... 880 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ YDR258C 3 ----MLR|QA 0.113 . YDR258C 7 MLRQATK|AP 0.069 . YDR258C 12 TKAPIQK|YL 0.071 . YDR258C 16 IQKYLQR|TQ 0.077 . YDR258C 21 QRTQLLR|RS 0.081 . YDR258C 22 RTQLLRR|ST 0.203 . YDR258C 26 LRRSTPR|IY 0.126 . YDR258C 34 YTIVQCK|RS 0.060 . YDR258C 35 TIVQCKR|SI 0.262 . YDR258C 43 ICSFNAR|PR 0.092 . YDR258C 45 SFNARPR|VA 0.132 . YDR258C 49 RPRVANK|LL 0.084 . YDR258C 55 KLLSDIK|TN 0.058 . YDR258C 70 ISTCALK|SS 0.068 . YDR258C 79 YGLPNFK|RT 0.061 . YDR258C 80 GLPNFKR|TY 0.203 . YDR258C 86 RTYVQMR|MD 0.113 . YDR258C 95 PNQQPEK|PA 0.074 . YDR258C 107 FGTNLTK|LA 0.069 . YDR258C 110 NLTKLAR|DG 0.077 . YDR258C 113 KLARDGK|LD 0.117 . YDR258C 120 LDPVIGR|DE 0.111 . YDR258C 126 RDEEIAR|AI 0.086 . YDR258C 133 AIQILSR|RT 0.074 . YDR258C 134 IQILSRR|TK 0.089 . YDR258C 136 ILSRRTK|NN 0.134 . YDR258C 144 NPCLIGR|AG 0.079 . YDR258C 149 GRAGVGK|TA 0.080 . YDR258C 159 IDGLAQR|IV 0.127 . YDR258C 170 EVPDSLK|DK 0.062 . YDR258C 172 PDSLKDK|DL 0.091 . YDR258C 187 SLIAGAK|YR 0.073 . YDR258C 189 IAGAKYR|GE 0.109 . YDR258C 195 RGEFEER|LK 0.076 . YDR258C 197 EFEERLK|KV 0.063 . YDR258C 198 FEERLKK|VL 0.223 . YDR258C 205 VLEEIDK|AN 0.071 . YDR258C 209 IDKANGK|VI 0.061 . YDR258C 225 MLLGLGK|TD 0.064 . YDR258C 237 DASNILK|PK 0.059 . YDR258C 239 SNILKPK|LA 0.076 . YDR258C 242 LKPKLAR|GL 0.109 . YDR258C 245 KLARGLR|CI 0.310 . YDR258C 256 TTLDEFK|II 0.064 . YDR258C 260 EFKIIEK|DP 0.057 . YDR258C 266 KDPALSR|RF 0.081 . YDR258C 267 DPALSRR|FQ 0.189 . YDR258C 286 DTISILR|GL 0.071 . YDR258C 289 SILRGLK|ER 0.090 . YDR258C 291 LRGLKER|YE 0.102 . YDR258C 299 EVHHGVR|IT 0.116 . YDR258C 314 AAVLSNR|YI 0.095 . YDR258C 319 NRYITDR|FL 0.112 . YDR258C 324 DRFLPDK|AI 0.073 . YDR258C 337 EACAVLR|LQ 0.088 . YDR258C 343 RLQHESK|PD 0.073 . YDR258C 349 KPDEIQK|LD 0.067 . YDR258C 352 EIQKLDR|AI 0.128 . YDR258C 356 LDRAIMK|IQ 0.068 . YDR258C 365 IELESLK|KE 0.054 . YDR258C 366 ELESLKK|ET 0.089 . YDR258C 375 DPVSVER|RE 0.072 . YDR258C 376 PVSVERR|EA 0.191 . YDR258C 381 RREALEK|DL 0.089 . YDR258C 386 EKDLEMK|ND 0.063 . YDR258C 392 KNDELNR|LT 0.077 . YDR258C 395 ELNRLTK|IW 0.194 . YDR258C 401 KIWDAER|AE 0.077 . YDR258C 408 AEIESIK|NA 0.076 . YDR258C 411 ESIKNAK|AN 0.069 . YDR258C 418 ANLEQAR|IE 0.080 . YDR258C 423 ARIELEK|CQ 0.070 . YDR258C 426 ELEKCQR|EG 0.073 . YDR258C 432 REGDYTK|AS 0.060 . YDR258C 437 TKASELR|YS 0.091 . YDR258C 440 SELRYSR|IP 0.133 . YDR258C 446 RIPDLEK|KV 0.068 . YDR258C 447 IPDLEKK|VA 0.081 . YDR258C 453 KVALSEK|SK 0.088 . YDR258C 455 ALSEKSK|DG 0.093 . YDR258C 459 KSKDGDK|VN 0.052 . YDR258C 474 TSDDISK|VV 0.070 . YDR258C 478 ISKVVAK|MT 0.099 . YDR258C 489 PTETVMK|GD 0.062 . YDR258C 492 TVMKGDK|DR 0.060 . YDR258C 494 MKGDKDR|LL 0.101 . YDR258C 503 YMENSLK|ER 0.058 . YDR258C 505 ENSLKER|VV 0.218 . YDR258C 521 AISDAVR|LQ 0.112 . YDR258C 524 DAVRLQR|AG 0.206 . YDR258C 531 AGLTSEK|RP 0.057 . YDR258C 532 GLTSEKR|PI 0.138 . YDR258C 547 GPTGTGK|TE 0.059 . YDR258C 552 GKTELTK|AL 0.064 . YDR258C 567 DESNVIR|FD 0.113 . YDR258C 576 MSEFQEK|HT 0.067 . YDR258C 581 EKHTVSR|LI 0.129 . YDR258C 603 QLTEAVR|RK 0.067 . YDR258C 604 LTEAVRR|KP 0.112 . YDR258C 605 TEAVRRK|PY 0.121 . YDR258C 617 LFDEFEK|AH 0.057 . YDR258C 624 AHPDVSK|LL 0.075 . YDR258C 634 QVLDEGK|LT 0.062 . YDR258C 646 GHHVDFR|NT 0.125 . YDR258C 666 ILLNDTK|LG 0.061 . YDR258C 672 KLGDDGK|ID 0.061 . YDR258C 678 KIDTATK|NK 0.053 . YDR258C 680 DTATKNK|VI 0.072 . YDR258C 686 KVIEAMK|RS 0.060 . YDR258C 687 VIEAMKR|SY 0.229 . YDR258C 696 PPEFINR|ID 0.088 . YDR258C 705 DILVFNR|LS 0.088 . YDR258C 708 VFNRLSK|KV 0.153 . YDR258C 709 FNRLSKK|VL 0.099 . YDR258C 712 LSKKVLR|SI 0.191 . YDR258C 718 RSIVDIR|IA 0.124 . YDR258C 725 IAEIQDR|LA 0.105 . YDR258C 729 QDRLAEK|RM 0.063 . YDR258C 730 DRLAEKR|MK 0.186 . YDR258C 732 LAEKRMK|ID 0.060 . YDR258C 740 DLTDEAK|DW 0.064 . YDR258C 746 KDWLTDK|GY 0.070 . YDR258C 755 DQLYGAR|PL 0.082 . YDR258C 759 GARPLNR|LI 0.114 . YDR258C 763 LNRLIHR|QI 0.113 . YDR258C 775 MATFLLK|GQ 0.066 . YDR258C 779 LLKGQIR|NG 0.102 . YDR258C 785 RNGETVR|VV 0.102 . YDR258C 789 TVRVVVK|DT 0.072 . YDR258C 792 VVVKDTK|LV 0.059 . YDR258C 811 VEEEAEK|-- 0.062 . ____________________________^_________________

  • Fasta :-

    >YDR258C ATGTTAAGACAAGCTACAAAAGCACCAATACAAAAATATTTACAGAGAACGCAACTATTA AGGCGAAGTACTCCACGAATATACACTATTGTACAGTGTAAAAGATCTATTTGCAGTTTT AATGCAAGACCTCGAGTAGCCAATAAACTTCTATCAGATATAAAAACAAATGCATTAAAT GAAGTCGCTATTTCAACCTGCGCCCTCAAGAGCTCATATGGATTGCCCAATTTCAAAAGA ACGTACGTCCAAATGAGGATGGATCCCAATCAGCAACCGGAAAAGCCAGCTTTAGAACAA TTTGGTACAAACTTGACAAAATTAGCGCGCGACGGTAAATTAGACCCTGTCATTGGCAGA GACGAAGAAATCGCAAGAGCTATTCAAATTTTATCAAGAAGAACAAAAAATAATCCATGT TTGATCGGTCGAGCTGGTGTCGGTAAAACCGCCCTTATTGATGGGTTAGCTCAAAGAATT GTTGCTGGGGAGGTCCCTGACTCGTTGAAAGATAAAGATCTAGTAGCTTTGGATTTGGGA TCTTTGATTGCTGGCGCCAAATATAGAGGTGAATTCGAAGAACGTTTAAAAAAGGTTTTA GAAGAAATTGACAAGGCCAATGGTAAGGTTATTGTTTTCATTGATGAAGTTCATATGCTG CTTGGCTTAGGTAAAACTGATGGTAGTATGGATGCTTCTAACATCTTAAAGCCAAAACTG GCCCGTGGGCTACGTTGTATCTCTGCAACCACTCTTGATGAATTCAAAATCATTGAAAAA GATCCGGCTTTATCGAGAAGGTTTCAGCCTATCTTATTGAATGAGCCGAGCGTCTCCGAT ACGATTTCTATACTAAGAGGTTTAAAAGAAAGGTACGAGGTTCATCATGGTGTAAGGATC ACTGATACAGCTTTAGTGTCTGCTGCAGTTCTTTCAAATCGTTATATAACAGACAGGTTT CTACCTGATAAAGCCATTGATCTAGTTGACGAAGCTTGTGCTGTACTACGTTTACAACAT GAATCCAAACCGGATGAAATACAGAAACTGGATCGTGCTATTATGAAAATACAAATAGAA CTGGAATCTTTAAAGAAAGAGACCGACCCTGTTTCCGTGGAAAGAAGAGAAGCGTTGGAA AAGGACCTAGAAATGAAAAATGATGAATTAAACAGATTAACAAAAATATGGGACGCTGAA AGAGCTGAAATTGAATCTATCAAAAATGCTAAGGCAAATTTGGAACAAGCAAGAATTGAG TTGGAAAAGTGTCAGAGAGAGGGTGATTACACTAAAGCATCCGAGTTGCGATATTCCAGA ATTCCTGACTTGGAGAAGAAGGTAGCTTTAAGCGAGAAGAGTAAGGACGGAGATAAAGTA AATTTACTTCATGATTCAGTTACTTCTGACGATATTTCTAAGGTTGTTGCCAAAATGACT GGTATTCCTACAGAAACGGTGATGAAAGGCGACAAGGACCGCCTACTGTATATGGAAAAT TCTTTAAAAGAAAGAGTCGTTGGCCAAGACGAGGCCATTGCTGCTATTTCTGATGCTGTA CGTCTTCAAAGGGCTGGTTTGACCAGTGAAAAGAGACCTATTGCCAGCTTTATGTTCTTA GGTCCTACTGGTACTGGTAAAACAGAATTGACCAAGGCTTTAGCTGAATTCCTATTTGAT GACGAATCAAATGTGATTCGTTTTGACATGTCAGAATTTCAAGAGAAGCATACTGTCTCT CGTTTAATCGGTGCACCTCCAGGTTACGTCTTAAGCGAATCTGGTGGCCAATTAACTGAG GCTGTCAGAAGAAAGCCTTATGCTGTCGTTTTATTTGATGAATTTGAAAAAGCGCACCCC GATGTTTCCAAACTACTGTTGCAAGTGTTGGATGAAGGTAAGCTGACCGATTCCCTAGGC CATCATGTTGATTTCCGTAACACGATCATTGTGATGACCTCAAACATTGGACAAGATATT TTATTAAACGACACAAAGTTGGGTGATGATGGTAAGATTGACACCGCAACCAAGAATAAA GTTATCGAAGCAATGAAAAGATCCTATCCACCTGAGTTCATCAATCGTATTGATGATATT CTAGTTTTCAATAGGCTATCCAAGAAAGTTTTGAGGTCAATTGTTGATATTAGAATTGCA GAAATTCAAGATCGTTTGGCCGAAAAAAGAATGAAAATTGATTTAACTGATGAAGCGAAG GATTGGCTAACTGACAAAGGCTACGATCAATTATATGGTGCAAGGCCATTGAATAGATTA ATTCATAGACAGATTTTGAACTCCATGGCAACTTTCTTATTAAAAGGTCAAATTAGAAAC GGCGAAACTGTTAGAGTGGTGGTTAAAGATACTAAGCTTGTCGTGCTACCAAATCATGAA GAAGGCGAAGTTGTTGAAGAGGAAGCTGAAAAGTAA
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  • Fasta :-

    MLRQATKAPIQKYLQRTQLLRRSTPRIYTIVQCKRSICSFNARPRVANKLLSDIKTNALN EVAISTCALKSSYGLPNFKRTYVQMRMDPNQQPEKPALEQFGTNLTKLARDGKLDPVIGR DEEIARAIQILSRRTKNNPCLIGRAGVGKTALIDGLAQRIVAGEVPDSLKDKDLVALDLG SLIAGAKYRGEFEERLKKVLEEIDKANGKVIVFIDEVHMLLGLGKTDGSMDASNILKPKL ARGLRCISATTLDEFKIIEKDPALSRRFQPILLNEPSVSDTISILRGLKERYEVHHGVRI TDTALVSAAVLSNRYITDRFLPDKAIDLVDEACAVLRLQHESKPDEIQKLDRAIMKIQIE LESLKKETDPVSVERREALEKDLEMKNDELNRLTKIWDAERAEIESIKNAKANLEQARIE LEKCQREGDYTKASELRYSRIPDLEKKVALSEKSKDGDKVNLLHDSVTSDDISKVVAKMT GIPTETVMKGDKDRLLYMENSLKERVVGQDEAIAAISDAVRLQRAGLTSEKRPIASFMFL GPTGTGKTELTKALAEFLFDDESNVIRFDMSEFQEKHTVSRLIGAPPGYVLSESGGQLTE AVRRKPYAVVLFDEFEKAHPDVSKLLLQVLDEGKLTDSLGHHVDFRNTIIVMTSNIGQDI LLNDTKLGDDGKIDTATKNKVIEAMKRSYPPEFINRIDDILVFNRLSKKVLRSIVDIRIA EIQDRLAEKRMKIDLTDEAKDWLTDKGYDQLYGARPLNRLIHRQILNSMATFLLKGQIRN GETVRVVVKDTKLVVLPNHEEGEVVEEEAEK

  • title: ATP binding site
  • coordinates: P542,T543,G544,T545,G546,K547,T548,E549,D613,N655
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
YDR258C265 SDPALSRRFQ0.991unspYDR258C265 SDPALSRRFQ0.991unspYDR258C265 SDPALSRRFQ0.991unspYDR258C372 STDPVSVERR0.995unspYDR258C451 SKVALSEKSK0.996unspYDR258C529 SAGLTSEKRP0.993unspYDR258C713 SKVLRSIVDI0.993unspYDR258C24 TLRRSTPRIY0.993unspYDR258C168 SEVPDSLKDK0.998unsp

YDR258C      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India