YDR411C | Dfm1p

UniProt_ID: Q12743

Computed_GO_Component_IDs: GO:0005783 GO:0005789 GO:0016021 GO:0016020
Computed_GO_Components: endoplasmic reticulum endoplasmic reticulum membrane integral component of membrane membrane
Computed_GO_Function_IDs:
Computed_GO_Functions:
Computed_GO_Process_IDs:
Computed_GO_Processes:
Curated_GO_Component_IDs: GO:0000837 GO:0000839 GO:0005783 GO:0016021
Curated_GO_Components: Doa10p ubiquitin ligase complex Hrd1p ubiquitin ligase ERAD-L complex endoplasmic reticulum integral component of membrane
Curated_GO_Function_IDs: GO:0003674
Curated_GO_Functions: molecular_function
Curated_GO_Processes: endoplasmic reticulum unfolded protein response ubiquitin-dependent ERAD pathway

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	YDR411C	OTHER	0.999690	0.000048	0.000262

No Results

Fasta :-
>YDR411C MAGPRNVRTLHGNGGRNNDVMGPKEFWLNIPPITRTLFTLAIVMTIVGRLNLINPWYFIY VWNLTFKKVQIWRLLTSCVMLSSRAMPALMELYSIYDRSSQLERGHFGPGLSNRRGPMVT VDYAYYLCFCILAITTATTIIYGSYYPVVLTSGFISCITYTWSIDNANVQIMFYGLIPVW GKYFPLIQLFISFVFNEGDFVISLIGFTTGYLYTCLDTHTLGPIWGMISRKADPTYGISP NGKFSTPWWFTSLYARITGAHNETATFNNNFANVPSSQRETRTFSGRGQRLGTAPATLSQ TSGTDSGRASGSQLRSGPSNLNQFQGRGQRVGQTNSPSDSQ
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/YDR411C.fa Sequence name : YDR411C Sequence length : 341 VALUES OF COMPUTED PARAMETERS Coef20 : 3.309 CoefTot : -1.360 ChDiff : 12 ZoneTo : 18 KR : 3 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.000 1.988 0.538 0.681 MesoH : 1.093 1.098 0.104 0.532 MuHd_075 : 8.556 8.135 2.547 1.511 MuHd_095 : 26.508 11.459 5.475 7.190 MuHd_100 : 23.528 9.383 4.159 6.447 MuHd_105 : 19.142 8.827 3.276 5.211 Hmax_075 : -3.383 -0.350 -2.045 0.175 Hmax_095 : 0.600 0.100 -2.353 2.460 Hmax_100 : -0.600 -1.100 -2.964 2.100 Hmax_105 : 2.800 2.450 -0.904 2.917 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8864 0.1136 DFMC : 0.9265 0.0735

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 341 YDR411C MAGPRNVRTLHGNGGRNNDVMGPKEFWLNIPPITRTLFTLAIVMTIVGRLNLINPWYFIYVWNLTFKKVQIWRLLTSCVM 80 LSSRAMPALMELYSIYDRSSQLERGHFGPGLSNRRGPMVTVDYAYYLCFCILAITTATTIIYGSYYPVVLTSGFISCITY 160 TWSIDNANVQIMFYGLIPVWGKYFPLIQLFISFVFNEGDFVISLIGFTTGYLYTCLDTHTLGPIWGMISRKADPTYGISP 240 NGKFSTPWWFTSLYARITGAHNETATFNNNFANVPSSQRETRTFSGRGQRLGTAPATLSQTSGTDSGRASGSQLRSGPSN 320 LNQFQGRGQRVGQTNSPSDSQ 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ..................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ YDR411C 5 --MAGPR|NV 0.111 . YDR411C 8 AGPRNVR|TL 0.204 . YDR411C 16 LHGNGGR|NN 0.093 . YDR411C 24 NDVMGPK|EF 0.060 . YDR411C 35 NIPPITR|TL 0.072 . YDR411C 49 VMTIVGR|LN 0.072 . YDR411C 67 VWNLTFK|KV 0.076 . YDR411C 68 WNLTFKK|VQ 0.080 . YDR411C 73 KKVQIWR|LL 0.088 . YDR411C 84 CVMLSSR|AM 0.078 . YDR411C 98 LYSIYDR|SS 0.129 . YDR411C 104 RSSQLER|GH 0.104 . YDR411C 114 GPGLSNR|RG 0.089 . YDR411C 115 PGLSNRR|GP 0.090 . YDR411C 182 LIPVWGK|YF 0.062 . YDR411C 230 IWGMISR|KA 0.110 . YDR411C 231 WGMISRK|AD 0.090 . YDR411C 243 GISPNGK|FS 0.089 . YDR411C 256 FTSLYAR|IT 0.167 . YDR411C 279 NVPSSQR|ET 0.070 . YDR411C 282 SSQRETR|TF 0.349 . YDR411C 287 TRTFSGR|GQ 0.108 . YDR411C 290 FSGRGQR|LG 0.147 . YDR411C 308 SGTDSGR|AS 0.128 . YDR411C 315 ASGSQLR|SG 0.114 . YDR411C 327 LNQFQGR|GQ 0.142 . YDR411C 330 FQGRGQR|VG 0.141 . ____________________________^_________________

Fasta :-
>YDR411C ATGGCAGGCCCAAGGAATGTGCGTACATTACATGGAAATGGAGGCCGTAATAATGATGTG ATGGGCCCAAAAGAATTCTGGTTAAATATCCCCCCAATAACAAGAACTTTATTTACTCTA GCGATCGTTATGACGATCGTCGGCCGGTTGAATCTAATCAATCCGTGGTACTTTATTTAT GTTTGGAATTTGACGTTCAAGAAGGTTCAGATATGGAGACTTCTTACTTCTTGTGTAATG CTTTCGTCTCGTGCCATGCCTGCGCTAATGGAACTATATAGTATTTATGACAGGTCCTCA CAGTTGGAGCGAGGGCATTTTGGTCCCGGTTTGTCCAATAGACGAGGACCGATGGTAACA GTAGACTATGCCTACTACCTGTGCTTTTGTATACTAGCCATCACTACGGCCACTACAATC ATTTATGGGTCCTACTACCCTGTTGTGCTCACCTCTGGGTTCATATCATGCATTACATAT ACTTGGTCGATCGACAATGCCAACGTGCAGATCATGTTTTATGGTTTGATTCCTGTTTGG GGGAAGTACTTCCCCTTAATTCAATTGTTTATCTCTTTCGTTTTTAATGAGGGTGATTTC GTAATCTCATTGATCGGTTTTACTACAGGGTACCTTTATACATGCTTAGATACCCATACA CTGGGGCCAATATGGGGGATGATATCCAGAAAAGCTGATCCAACCTACGGAATCTCGCCC AATGGGAAATTCTCAACGCCATGGTGGTTTACTAGTCTATATGCTCGCATAACGGGTGCC CACAATGAAACTGCAACATTCAACAACAACTTTGCCAATGTGCCATCTTCGCAAAGAGAA ACGAGAACTTTTAGTGGAAGAGGTCAACGATTGGGTACGGCCCCTGCAACATTGTCTCAA ACCAGTGGCACAGATTCAGGCAGAGCTTCTGGAAGTCAATTAAGAAGTGGCCCATCGAAT TTGAACCAATTTCAAGGCCGCGGCCAACGAGTAGGACAAACAAACAGCCCCTCCGACTCA CAATAA
Download Fasta

Fasta :-

MAGPRNVRTLHGNGGRNNDVMGPKEFWLNIPPITRTLFTLAIVMTIVGRLNLINPWYFIY VWNLTFKKVQIWRLLTSCVMLSSRAMPALMELYSIYDRSSQLERGHFGPGLSNRRGPMVT VDYAYYLCFCILAITTATTIIYGSYYPVVLTSGFISCITYTWSIDNANVQIMFYGLIPVW GKYFPLIQLFISFVFNEGDFVISLIGFTTGYLYTCLDTHTLGPIWGMISRKADPTYGISP NGKFSTPWWFTSLYARITGAHNETATFNNNFANVPSSQRETRTFSGRGQRLGTAPATLSQ TSGTDSGRASGSQLRSGPSNLNQFQGRGQRVGQTNSPSDSQ

Rhomboid-like

No Results

	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore
	YDR411C	T	304	0.562	0.108	YDR411C	T	297	0.531	0.024

	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore
	YDR411C	T	304	0.562	0.108	YDR411C	T	297	0.531	0.024

	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method
	YDR411C	285 S	TRTFSGRGQ	0.996	unsp	YDR411C	285 S	TRTFSGRGQ	0.996	unsp	YDR411C	285 S	TRTFSGRGQ	0.996	unsp	YDR411C	302 S	LSQTSGTDS	0.997	unsp	YDR411C	306 S	SGTDSGRAS	0.991	unsp	YDR411C	310 S	SGRASGSQL	0.994	unsp	YDR411C	100 S	YDRSSQLER	0.995	unsp	YDR411C	277 S	NVPSSQRET	0.998	unsp

YDR411C | Dfm1p

ID's

UniProt_ID: Q12743

GEO Functions

Computed_GO_Component_IDs: GO:0005783 GO:0005789 GO:0016021 GO:0016020

Computed_GO_Components: endoplasmic reticulum endoplasmic reticulum membrane integral component of membrane membrane

Computed_GO_Function_IDs:

Computed_GO_Functions:

Computed_GO_Process_IDs:

Computed_GO_Processes:

Curated_GO_Component_IDs: GO:0000837 GO:0000839 GO:0005783 GO:0016021

Curated_GO_Components: Doa10p ubiquitin ligase complex Hrd1p ubiquitin ligase ERAD-L complex endoplasmic reticulum integral component of membrane

Curated_GO_Function_IDs: GO:0003674

Curated_GO_Functions: molecular_function

Curated_GO_Processes: endoplasmic reticulum unfolded protein response ubiquitin-dependent ERAD pathway

Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

Rhomboid-like

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

YDR411C

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India