YMR089C | m-AAA protease subunit YTA12

_IDPredictionOTHERSPmTPCS_Position
YMR089CmTP0.2502590.0000120.749730CS pos: 31-32. IKS-LH. Pr: 0.0950
No Results

  • Fasta :-

    >YMR089C MLLLSWSRIATKVVRRPVRFRSYYGLTHIKSLHTQYRLLNRLQENKSGNKNEDNNEDAKL NKEIPTDEEVEAIRKQVEKYIEQTKNNTIPANWKEQKRKIDESIRRLEDAVLKQESNRIQ EERKEKEEENGPSKAKSNRTKEQGYFEGNNSRNIPPPPPPPPPKPPLNDPSNPVSKNVNL FQIGLTFFLLSFLLDLLNSLEEQSEITWQDFREKLLAKGYVAKLIVVNKSMVKVMLNDNG KNQADNYGRNFYYFTIGSIDSFEHKLQKAQDELDIDKDFRIPVLYVQEGNWAKAMFQILP TVLMIAGIIWLTRRSAQAAGGSRGGIFGLSRSKAKKFNTETDVKIKFKDVAGCDEAKEEI MEFVSFLKEPSRYEKMGAKIPRGAILSGPPGTGKTLLAKATAGEAGVPFYFVSGSEFVEM FVGVGAARVRDLFKTARENAPSIVFIDEIDAIGKARQKGNFSGANDERENTLNQMLVEMD GFTPADHVVVLAGTNRPDILDKALLRPGRFDRHINIDKPELEGRKAIFAVHLHHLKLAGE IFDLKNRLAALTPGFSGADIANVCNEAALIAARSDEDAVKLNHFEQAIERVIGGVERKSK LLSPEEKKVVAYHEAGHAVCGWYLKYADPLLKVSIIPRGQGALGYAQYLPGDIFLLTEQQ LKDRMTMSLGGRVSEELHFPSVTSGASDDFKKVTSMATAMVTELGMSDKIGWVNYQKRDD SDLTKPFSDETGDIIDSEVYRIVQECHDRCTKLLKEKAEDVEKIAQVLLKKEVLTREDMI DLLGKRPFPERNDAFDKYLNDYETEKIRKEEEKNEKRNEPKPSTN
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/YMR089C.fa Sequence name : YMR089C Sequence length : 825 VALUES OF COMPUTED PARAMETERS Coef20 : 5.325 CoefTot : 0.388 ChDiff : 0 ZoneTo : 43 KR : 9 DE : 0 CleavSite : 21 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.076 2.053 0.257 0.801 MesoH : -0.467 0.406 -0.321 0.242 MuHd_075 : 31.924 26.063 8.527 7.410 MuHd_095 : 56.505 27.812 12.347 13.582 MuHd_100 : 55.279 25.637 12.143 12.893 MuHd_105 : 50.202 23.920 11.261 11.597 Hmax_075 : 11.200 19.133 1.176 2.720 Hmax_095 : 14.875 17.675 2.361 6.431 Hmax_100 : 15.500 16.300 2.753 6.350 Hmax_105 : 11.400 11.700 1.679 3.810 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0011 0.9989 DFMC : 0.0026 0.9974 This protein is probably imported in mitochondria. f(Ser) = 0.0930 f(Arg) = 0.1628 CMi = 0.31226 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 825 YMR089C MLLLSWSRIATKVVRRPVRFRSYYGLTHIKSLHTQYRLLNRLQENKSGNKNEDNNEDAKLNKEIPTDEEVEAIRKQVEKY 80 IEQTKNNTIPANWKEQKRKIDESIRRLEDAVLKQESNRIQEERKEKEEENGPSKAKSNRTKEQGYFEGNNSRNIPPPPPP 160 PPPKPPLNDPSNPVSKNVNLFQIGLTFFLLSFLLDLLNSLEEQSEITWQDFREKLLAKGYVAKLIVVNKSMVKVMLNDNG 240 KNQADNYGRNFYYFTIGSIDSFEHKLQKAQDELDIDKDFRIPVLYVQEGNWAKAMFQILPTVLMIAGIIWLTRRSAQAAG 320 GSRGGIFGLSRSKAKKFNTETDVKIKFKDVAGCDEAKEEIMEFVSFLKEPSRYEKMGAKIPRGAILSGPPGTGKTLLAKA 400 TAGEAGVPFYFVSGSEFVEMFVGVGAARVRDLFKTARENAPSIVFIDEIDAIGKARQKGNFSGANDERENTLNQMLVEMD 480 GFTPADHVVVLAGTNRPDILDKALLRPGRFDRHINIDKPELEGRKAIFAVHLHHLKLAGEIFDLKNRLAALTPGFSGADI 560 ANVCNEAALIAARSDEDAVKLNHFEQAIERVIGGVERKSKLLSPEEKKVVAYHEAGHAVCGWYLKYADPLLKVSIIPRGQ 640 GALGYAQYLPGDIFLLTEQQLKDRMTMSLGGRVSEELHFPSVTSGASDDFKKVTSMATAMVTELGMSDKIGWVNYQKRDD 720 SDLTKPFSDETGDIIDSEVYRIVQECHDRCTKLLKEKAEDVEKIAQVLLKKEVLTREDMIDLLGKRPFPERNDAFDKYLN 800 DYETEKIRKEEEKNEKRNEPKPSTN 880 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ................................................................................ 720 ................................................................................ 800 ......................... 880 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ YMR089C 8 LLLSWSR|IA 0.089 . YMR089C 12 WSRIATK|VV 0.069 . YMR089C 15 IATKVVR|RP 0.069 . YMR089C 16 ATKVVRR|PV 0.146 . YMR089C 19 VVRRPVR|FR 0.316 . YMR089C 21 RRPVRFR|SY 0.189 . YMR089C 30 YGLTHIK|SL 0.083 . YMR089C 37 SLHTQYR|LL 0.115 . YMR089C 41 QYRLLNR|LQ 0.079 . YMR089C 46 NRLQENK|SG 0.083 . YMR089C 50 ENKSGNK|NE 0.058 . YMR089C 59 DNNEDAK|LN 0.067 . YMR089C 62 EDAKLNK|EI 0.070 . YMR089C 74 EEVEAIR|KQ 0.067 . YMR089C 75 EVEAIRK|QV 0.111 . YMR089C 79 IRKQVEK|YI 0.100 . YMR089C 85 KYIEQTK|NN 0.058 . YMR089C 94 TIPANWK|EQ 0.061 . YMR089C 97 ANWKEQK|RK 0.061 . YMR089C 98 NWKEQKR|KI 0.264 . YMR089C 99 WKEQKRK|ID 0.121 . YMR089C 105 KIDESIR|RL 0.085 . YMR089C 106 IDESIRR|LE 0.150 . YMR089C 113 LEDAVLK|QE 0.060 . YMR089C 118 LKQESNR|IQ 0.090 . YMR089C 123 NRIQEER|KE 0.113 . YMR089C 124 RIQEERK|EK 0.090 . YMR089C 126 QEERKEK|EE 0.130 . YMR089C 134 EENGPSK|AK 0.066 . YMR089C 136 NGPSKAK|SN 0.106 . YMR089C 139 SKAKSNR|TK 0.205 . YMR089C 141 AKSNRTK|EQ 0.094 . YMR089C 152 FEGNNSR|NI 0.077 . YMR089C 164 PPPPPPK|PP 0.061 . YMR089C 176 PSNPVSK|NV 0.084 . YMR089C 212 ITWQDFR|EK 0.068 . YMR089C 214 WQDFREK|LL 0.064 . YMR089C 218 REKLLAK|GY 0.071 . YMR089C 223 AKGYVAK|LI 0.075 . YMR089C 229 KLIVVNK|SM 0.086 . YMR089C 233 VNKSMVK|VM 0.051 . YMR089C 241 MLNDNGK|NQ 0.061 . YMR089C 249 QADNYGR|NF 0.078 . YMR089C 265 IDSFEHK|LQ 0.067 . YMR089C 268 FEHKLQK|AQ 0.062 . YMR089C 277 DELDIDK|DF 0.059 . YMR089C 280 DIDKDFR|IP 0.066 . YMR089C 293 QEGNWAK|AM 0.088 . YMR089C 313 GIIWLTR|RS 0.100 . YMR089C 314 IIWLTRR|SA 0.327 . YMR089C 323 QAAGGSR|GG 0.084 . YMR089C 331 GIFGLSR|SK 0.145 . YMR089C 333 FGLSRSK|AK 0.053 . YMR089C 335 LSRSKAK|KF 0.084 . YMR089C 336 SRSKAKK|FN 0.172 . YMR089C 344 NTETDVK|IK 0.057 . YMR089C 346 ETDVKIK|FK 0.077 . YMR089C 348 DVKIKFK|DV 0.100 . YMR089C 357 AGCDEAK|EE 0.064 . YMR089C 368 EFVSFLK|EP 0.064 . YMR089C 372 FLKEPSR|YE 0.084 . YMR089C 375 EPSRYEK|MG 0.180 . YMR089C 379 YEKMGAK|IP 0.063 . YMR089C 382 MGAKIPR|GA 0.175 . YMR089C 394 GPPGTGK|TL 0.062 . YMR089C 399 GKTLLAK|AT 0.067 . YMR089C 428 VGVGAAR|VR 0.068 . YMR089C 430 VGAARVR|DL 0.110 . YMR089C 434 RVRDLFK|TA 0.072 . YMR089C 437 DLFKTAR|EN 0.096 . YMR089C 454 EIDAIGK|AR 0.060 . YMR089C 456 DAIGKAR|QK 0.112 . YMR089C 458 IGKARQK|GN 0.068 . YMR089C 468 SGANDER|EN 0.090 . YMR089C 496 VLAGTNR|PD 0.071 . YMR089C 502 RPDILDK|AL 0.063 . YMR089C 506 LDKALLR|PG 0.071 . YMR089C 509 ALLRPGR|FD 0.229 . YMR089C 512 RPGRFDR|HI 0.355 . YMR089C 518 RHINIDK|PE 0.062 . YMR089C 524 KPELEGR|KA 0.112 . YMR089C 525 PELEGRK|AI 0.081 . YMR089C 536 VHLHHLK|LA 0.073 . YMR089C 545 GEIFDLK|NR 0.056 . YMR089C 547 IFDLKNR|LA 0.071 . YMR089C 573 AALIAAR|SD 0.136 . YMR089C 580 SDEDAVK|LN 0.063 . YMR089C 590 FEQAIER|VI 0.118 . YMR089C 597 VIGGVER|KS 0.070 . YMR089C 598 IGGVERK|SK 0.097 . YMR089C 600 GVERKSK|LL 0.225 . YMR089C 607 LLSPEEK|KV 0.086 . YMR089C 608 LSPEEKK|VV 0.120 . YMR089C 625 VCGWYLK|YA 0.080 . YMR089C 632 YADPLLK|VS 0.055 . YMR089C 638 KVSIIPR|GQ 0.145 . YMR089C 662 LTEQQLK|DR 0.061 . YMR089C 664 EQQLKDR|MT 0.095 . YMR089C 672 TMSLGGR|VS 0.088 . YMR089C 691 GASDDFK|KV 0.090 . YMR089C 692 ASDDFKK|VT 0.136 . YMR089C 709 ELGMSDK|IG 0.061 . YMR089C 717 GWVNYQK|RD 0.058 . YMR089C 718 WVNYQKR|DD 0.326 . YMR089C 725 DDSDLTK|PF 0.081 . YMR089C 741 IDSEVYR|IV 0.146 . YMR089C 749 VQECHDR|CT 0.072 . YMR089C 752 CHDRCTK|LL 0.095 . YMR089C 755 RCTKLLK|EK 0.058 . YMR089C 757 TKLLKEK|AE 0.065 . YMR089C 763 KAEDVEK|IA 0.065 . YMR089C 770 IAQVLLK|KE 0.060 . YMR089C 771 AQVLLKK|EV 0.129 . YMR089C 776 KKEVLTR|ED 0.089 . YMR089C 785 MIDLLGK|RP 0.061 . YMR089C 786 IDLLGKR|PF 0.101 . YMR089C 791 KRPFPER|ND 0.073 . YMR089C 797 RNDAFDK|YL 0.084 . YMR089C 806 NDYETEK|IR 0.061 . YMR089C 808 YETEKIR|KE 0.076 . YMR089C 809 ETEKIRK|EE 0.083 . YMR089C 813 IRKEEEK|NE 0.071 . YMR089C 816 EEEKNEK|RN 0.065 . YMR089C 817 EEKNEKR|NE 0.095 . YMR089C 821 EKRNEPK|PS 0.074 . ____________________________^_________________

  • Fasta :-

    >YMR089C ATGTTGCTACTTTCTTGGTCAAGAATTGCTACTAAGGTAGTTAGAAGGCCCGTTCGCTTC CGGTCCTATTACGGCTTGACCCATATCAAGAGTTTACATACTCAATATCGGCTACTCAAT AGGCTGCAAGAGAATAAGAGCGGTAACAAGAACGAGGACAATAACGAAGACGCTAAACTT AACAAAGAAATTCCCACAGACGAAGAGGTTGAAGCAATAAGAAAACAAGTAGAAAAATAT ATCGAACAAACTAAAAATAATACTATACCGGCTAACTGGAAAGAACAGAAACGCAAAATT GATGAAAGTATTAGGCGTTTAGAAGATGCTGTATTGAAACAAGAATCTAACAGAATTCAA GAAGAAAGAAAGGAAAAAGAGGAGGAAAATGGTCCTTCAAAAGCCAAGTCAAACAGAACA AAAGAGCAGGGCTACTTTGAAGGTAACAATAGCAGAAATATTCCACCGCCACCACCACCT CCTCCCCCAAAACCACCTCTAAATGATCCTAGTAATCCTGTATCGAAAAATGTTAACTTA TTCCAGATAGGACTAACTTTTTTCCTCCTTTCGTTTTTATTGGATCTCCTCAACAGTTTG GAAGAGCAAAGTGAGATAACGTGGCAGGATTTTAGAGAGAAACTATTGGCAAAAGGTTAT GTTGCGAAGTTGATTGTTGTCAACAAGTCCATGGTGAAAGTGATGTTAAATGACAACGGA AAAAACCAAGCCGACAATTACGGTCGCAACTTCTATTATTTCACAATTGGTTCAATTGAT AGCTTCGAACACAAACTTCAGAAAGCACAGGACGAACTGGACATTGATAAGGATTTCAGA ATACCTGTACTATATGTTCAAGAAGGCAATTGGGCTAAAGCTATGTTCCAAATTTTGCCA ACTGTTTTAATGATTGCAGGTATTATTTGGTTGACAAGAAGATCGGCACAAGCAGCGGGC GGTAGCCGTGGAGGCATATTTGGTCTGAGTCGTTCTAAGGCTAAAAAATTTAACACTGAA ACAGACGTTAAGATCAAGTTCAAGGACGTTGCCGGATGCGATGAGGCTAAGGAAGAAATT ATGGAGTTTGTTAGCTTCTTGAAAGAACCTTCTCGTTATGAAAAAATGGGAGCTAAAATT CCTAGAGGTGCGATTCTATCTGGTCCACCAGGTACCGGTAAAACTTTGCTTGCAAAGGCA ACAGCAGGTGAAGCCGGTGTTCCGTTTTATTTTGTTTCTGGTTCAGAATTTGTAGAAATG TTTGTTGGTGTTGGTGCAGCAAGAGTAAGAGATTTGTTCAAAACTGCAAGAGAAAATGCA CCCTCAATTGTGTTTATTGACGAAATTGATGCTATAGGAAAAGCAAGACAAAAGGGTAAT TTTTCAGGTGCCAATGATGAGAGAGAGAACACGCTAAATCAAATGTTAGTAGAAATGGAT GGTTTCACTCCAGCTGACCACGTTGTTGTTTTAGCTGGTACCAATAGACCCGATATTCTC GATAAAGCATTATTAAGGCCTGGTAGATTTGACAGGCATATCAATATCGACAAGCCCGAA CTTGAGGGTAGAAAAGCCATTTTTGCTGTTCATTTACATCATTTGAAACTTGCCGGGGAA ATTTTTGATTTGAAAAATAGATTAGCGGCTTTGACGCCAGGCTTTTCTGGTGCTGATATT GCCAACGTTTGTAACGAGGCCGCCTTGATTGCTGCTAGAAGTGATGAAGATGCAGTAAAA TTGAATCATTTTGAACAAGCTATCGAAAGAGTCATCGGTGGAGTGGAACGCAAATCCAAG CTACTCTCTCCCGAAGAGAAGAAAGTAGTGGCTTACCACGAGGCTGGTCATGCTGTATGT GGATGGTACTTAAAATACGCAGATCCTCTTCTGAAAGTCAGTATTATTCCACGTGGCCAG GGCGCCCTTGGTTATGCACAGTATTTGCCAGGTGATATCTTCTTACTAACTGAACAGCAA CTTAAGGACAGAATGACCATGTCTCTGGGTGGAAGAGTTTCTGAAGAATTACATTTCCCA TCAGTTACAAGTGGCGCATCTGATGACTTCAAAAAAGTTACTAGCATGGCCACGGCAATG GTCACAGAATTAGGCATGAGTGATAAAATTGGCTGGGTCAATTACCAGAAGAGAGATGAT AGCGATTTGACAAAACCATTTTCGGACGAGACAGGTGACATTATTGATTCCGAAGTATAC AGAATCGTCCAAGAATGCCATGACAGATGTACAAAGCTGCTTAAAGAAAAAGCAGAAGAT GTAGAGAAGATTGCTCAAGTACTACTGAAAAAAGAAGTTTTGACAAGAGAAGATATGATT GATTTACTTGGTAAGCGCCCTTTCCCAGAAAGGAATGATGCTTTTGATAAGTACTTGAAC GATTACGAAACGGAAAAAATCAGGAAGGAAGAAGAAAAAAACGAAAAACGTAATGAGCCT AAGCCATCTACAAACTGA
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  • Fasta :-

    MLLLSWSRIATKVVRRPVRFRSYYGLTHIKSLHTQYRLLNRLQENKSGNKNEDNNEDAKL NKEIPTDEEVEAIRKQVEKYIEQTKNNTIPANWKEQKRKIDESIRRLEDAVLKQESNRIQ EERKEKEEENGPSKAKSNRTKEQGYFEGNNSRNIPPPPPPPPPKPPLNDPSNPVSKNVNL FQIGLTFFLLSFLLDLLNSLEEQSEITWQDFREKLLAKGYVAKLIVVNKSMVKVMLNDNG KNQADNYGRNFYYFTIGSIDSFEHKLQKAQDELDIDKDFRIPVLYVQEGNWAKAMFQILP TVLMIAGIIWLTRRSAQAAGGSRGGIFGLSRSKAKKFNTETDVKIKFKDVAGCDEAKEEI MEFVSFLKEPSRYEKMGAKIPRGAILSGPPGTGKTLLAKATAGEAGVPFYFVSGSEFVEM FVGVGAARVRDLFKTARENAPSIVFIDEIDAIGKARQKGNFSGANDERENTLNQMLVEMD GFTPADHVVVLAGTNRPDILDKALLRPGRFDRHINIDKPELEGRKAIFAVHLHHLKLAGE IFDLKNRLAALTPGFSGADIANVCNEAALIAARSDEDAVKLNHFEQAIERVIGGVERKSK LLSPEEKKVVAYHEAGHAVCGWYLKYADPLLKVSIIPRGQGALGYAQYLPGDIFLLTEQQ LKDRMTMSLGGRVSEELHFPSVTSGASDDFKKVTSMATAMVTELGMSDKIGWVNYQKRDD SDLTKPFSDETGDIIDSEVYRIVQECHDRCTKLLKEKAEDVEKIAQVLLKKEVLTREDMI DLLGKRPFPERNDAFDKYLNDYETEKIRKEEEKNEKRNEPKPSTN

  • title: ATP binding site
  • coordinates: P389,P390,G391,T392,G393,K394,T395,L396,D447,N495
IDSitePositionGscoreIscore
YMR089CT8240.5150.039
IDSitePositionGscoreIscore
YMR089CT8240.5150.039
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
YMR089C603 SSKLLSPEEK0.998unspYMR089C603 SSKLLSPEEK0.998unspYMR089C603 SSKLLSPEEK0.998unspYMR089C103 SKIDESIRRL0.995unspYMR089C574 SIAARSDEDA0.996unsp

YMR089C      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India