YOR117W | proteasome regulatory particle base subunit RPT5

UniProt_ID: P33297

Computed_GO_Component_IDs: GO:0005737 GO:0005634 GO:0000502
Computed_GO_Components: cytoplasm nucleus proteasome complex
Computed_GO_Function_IDs: GO:0005524 GO:0016787 GO:0000166 GO:0036402
Computed_GO_Functions: ATP binding hydrolase activity nucleotide binding proteasome-activating ATPase activity
Computed_GO_Process_IDs: GO:1901800 GO:0030163
Computed_GO_Processes: positive regulation of proteasomal protein catabolic process protein catabolic process
Curated_GO_Component_IDs: GO:0031597 GO:0031595 GO:0008540
Curated_GO_Components: cytosolic proteasome complex nuclear proteasome complex proteasome regulatory particle, base subcomplex
Curated_GO_Function_IDs: GO:0016887 GO:0017025 GO:0036402
Curated_GO_Functions: ATPase activity TBP-class protein binding proteasome-activating ATPase activity
Curated_GO_Processes: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly proteasome regulatory particle assembly ubiquitin-dependent ERAD pathway ubiquitin-dependent protein catabolic process

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	YOR117W	OTHER	0.999938	0.000014	0.000049

No Results

Fasta :-
>YOR117W MATLEELDAQTLPGDDELDQEILNLSTQELQTRAKLLDNEIRIFRSELQRLSHENNVMLE KIKDNKEKIKNNRQLPYLVANVVEVMDMNEIEDKENSESTTQGGNVNLDNTAVGKAAVVK TSSRQTVFLPMVGLVDPDKLKPNDLVGVNKDSYLILDTLPSEFDSRVKAMEVDEKPTETY SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTN ATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDRE VQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQI LQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEGIS EVQARKSKSVSFYA
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/YOR117W.fa Sequence name : YOR117W Sequence length : 434 VALUES OF COMPUTED PARAMETERS Coef20 : 2.763 CoefTot : 0.263 ChDiff : -16 ZoneTo : 4 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.606 0.900 -0.140 0.418 MesoH : -0.525 0.357 -0.358 0.214 MuHd_075 : 18.863 12.676 5.762 3.795 MuHd_095 : 15.793 9.203 4.736 1.628 MuHd_100 : 18.716 12.272 5.042 2.707 MuHd_105 : 17.032 11.676 3.972 2.903 Hmax_075 : 0.000 4.550 -1.164 3.127 Hmax_095 : 2.600 6.100 -0.440 2.780 Hmax_100 : 7.700 6.100 0.049 2.830 Hmax_105 : 5.800 8.700 -0.221 3.630 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9912 0.0088 DFMC : 0.9729 0.0271

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 434 YOR117W MATLEELDAQTLPGDDELDQEILNLSTQELQTRAKLLDNEIRIFRSELQRLSHENNVMLEKIKDNKEKIKNNRQLPYLVA 80 NVVEVMDMNEIEDKENSESTTQGGNVNLDNTAVGKAAVVKTSSRQTVFLPMVGLVDPDKLKPNDLVGVNKDSYLILDTLP 160 SEFDSRVKAMEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTN 240 ATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDR 320 VKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGM 400 IALRNGQSSVKHEDFVEGISEVQARKSKSVSFYA 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 .................................. 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ YOR117W 33 TQELQTR|AK 0.074 . YOR117W 35 ELQTRAK|LL 0.075 . YOR117W 42 LLDNEIR|IF 0.090 . YOR117W 45 NEIRIFR|SE 0.287 . YOR117W 50 FRSELQR|LS 0.107 . YOR117W 61 NNVMLEK|IK 0.067 . YOR117W 63 VMLEKIK|DN 0.069 . YOR117W 66 EKIKDNK|EK 0.064 . YOR117W 68 IKDNKEK|IK 0.068 . YOR117W 70 DNKEKIK|NN 0.069 . YOR117W 73 EKIKNNR|QL 0.090 . YOR117W 94 MNEIEDK|EN 0.073 . YOR117W 115 DNTAVGK|AA 0.069 . YOR117W 120 GKAAVVK|TS 0.079 . YOR117W 124 VVKTSSR|QT 0.075 . YOR117W 139 GLVDPDK|LK 0.061 . YOR117W 141 VDPDKLK|PN 0.064 . YOR117W 150 DLVGVNK|DS 0.082 . YOR117W 166 PSEFDSR|VK 0.074 . YOR117W 168 EFDSRVK|AM 0.061 . YOR117W 175 AMEVDEK|PT 0.069 . YOR117W 188 DVGGLDK|QI 0.066 . YOR117W 202 AIVLPMK|RA 0.068 . YOR117W 203 IVLPMKR|AD 0.130 . YOR117W 206 PMKRADK|FK 0.176 . YOR117W 208 KRADKFK|DM 0.115 . YOR117W 213 FKDMGIR|AP 0.087 . YOR117W 216 MGIRAPK|GA 0.159 . YOR117W 228 GPPGTGK|TL 0.059 . YOR117W 233 GKTLLAR|AC 0.100 . YOR117W 245 TNATFLK|LA 0.098 . YOR117W 261 YIGEGAK|LV 0.073 . YOR117W 264 EGAKLVR|DA 0.131 . YOR117W 271 DAFALAK|EK 0.060 . YOR117W 273 FALAKEK|AP 0.060 . YOR117W 289 LDAIGTK|RF 0.059 . YOR117W 290 DAIGTKR|FD 0.191 . YOR117W 295 KRFDSEK|SG 0.091 . YOR117W 299 SEKSGDR|EV 0.089 . YOR117W 303 GDREVQR|TM 0.097 . YOR117W 320 GFSSDDR|VK 0.071 . YOR117W 322 SSDDRVK|VL 0.059 . YOR117W 329 VLAATNR|VD 0.069 . YOR117W 339 LDPALLR|SG 0.081 . YOR117W 342 ALLRSGR|LD 0.237 . YOR117W 345 RSGRLDR|KI 0.320 . YOR117W 346 SGRLDRK|IE 0.073 . YOR117W 357 LPSEDSR|AQ 0.111 . YOR117W 366 ILQIHSR|KM 0.089 . YOR117W 367 LQIHSRK|MT 0.095 . YOR117W 381 NWQELAR|ST 0.149 . YOR117W 392 FNGAQLK|AV 0.081 . YOR117W 404 AGMIALR|NG 0.076 . YOR117W 411 NGQSSVK|HE 0.068 . YOR117W 425 ISEVQAR|KS 0.104 . YOR117W 426 SEVQARK|SK 0.118 . YOR117W 428 VQARKSK|SV 0.377 . ____________________________^_________________

Fasta :-
>YOR117W ATGGCCACCTTGGAAGAATTGGATGCTCAAACTTTACCAGGAGACGATGAATTAGATCAA GAGATTTTGAATCTTTCGACGCAGGAGCTTCAAACAAGAGCCAAGCTCTTGGACAATGAA ATTCGTATTTTTAGATCTGAATTGCAAAGACTGTCCCATGAAAACAACGTTATGCTCGAG AAGATTAAGGACAATAAGGAAAAAATCAAGAATAATAGACAGTTACCGTACCTTGTGGCT AACGTTGTCGAGGTCATGGATATGAATGAGATTGAAGACAAAGAAAATAGTGAATCTACT ACACAAGGTGGTAATGTCAACTTAGATAACACCGCTGTTGGCAAAGCTGCTGTAGTCAAG ACTTCTTCTAGACAGACTGTTTTCTTGCCCATGGTCGGTTTAGTAGATCCTGATAAACTT AAGCCAAATGACCTGGTAGGTGTGAATAAAGACTCGTATTTGATTTTGGATACTTTACCC TCTGAATTTGATTCTCGTGTAAAAGCTATGGAGGTAGATGAAAAACCCACAGAAACTTAC TCGGACGTGGGTGGGTTGGATAAACAGATTGAAGAGCTGGTGGAGGCCATTGTGTTACCT ATGAAACGTGCAGATAAATTCAAAGATATGGGAATTAGAGCGCCCAAGGGTGCCCTAATG TACGGGCCTCCGGGTACAGGTAAAACTTTATTAGCTCGTGCTTGCGCGGCTCAGACGAAT GCTACTTTTTTGAAGCTGGCAGCACCTCAATTGGTACAAATGTATATCGGTGAAGGTGCT AAACTAGTCCGCGATGCTTTTGCACTGGCCAAGGAAAAGGCACCAACTATTATTTTCATT GACGAATTGGATGCCATTGGTACTAAGAGATTTGATTCTGAAAAATCCGGTGATAGGGAA GTGCAAAGAACCATGCTGGAATTATTGAATCAATTGGATGGCTTTAGCTCCGATGATCGT GTCAAAGTCTTGGCGGCTACCAATAGAGTTGATGTTTTAGATCCTGCTTTGTTAAGATCA GGAAGATTGGATAGAAAAATTGAATTCCCACTCCCATCCGAAGACTCGAGAGCTCAAATT TTACAAATTCATTCAAGAAAAATGACCACTGATGATGATATTAACTGGCAAGAACTTGCC AGGTCTACTGATGAGTTTAATGGTGCCCAGTTAAAGGCGGTAACTGTGGAGGCAGGTATG ATTGCCTTAAGGAATGGGCAATCTTCCGTTAAACACGAAGATTTCGTTGAGGGTATAAGT GAAGTTCAAGCAAGAAAATCGAAATCGGTATCCTTTTATGCATAA
Download Fasta

Fasta :-

MATLEELDAQTLPGDDELDQEILNLSTQELQTRAKLLDNEIRIFRSELQRLSHENNVMLE KIKDNKEKIKNNRQLPYLVANVVEVMDMNEIEDKENSESTTQGGNVNLDNTAVGKAAVVK TSSRQTVFLPMVGLVDPDKLKPNDLVGVNKDSYLILDTLPSEFDSRVKAMEVDEKPTETY SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTN ATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDRE VQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQI LQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEGIS EVQARKSKSVSFYA

CATH

title: ATP binding site
coordinates: P223,P224,G225,T226,G227,K228,T229,L230,D281,N328

No Results

	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method
	YOR117W	409 S	NGQSSVKHE	0.997	unsp	YOR117W	409 S	NGQSSVKHE	0.997	unsp	YOR117W	409 S	NGQSSVKHE	0.997	unsp	YOR117W	427 S	QARKSKSVS	0.992	unsp	YOR117W	52 S	LQRLSHENN	0.996	unsp	YOR117W	293 S	KRFDSEKSG	0.998	unsp

YOR117W | proteasome regulatory particle base subunit RPT5

ID's

UniProt_ID: P33297

GEO Functions

Computed_GO_Component_IDs: GO:0005737 GO:0005634 GO:0000502

Computed_GO_Components: cytoplasm nucleus proteasome complex

Computed_GO_Function_IDs: GO:0005524 GO:0016787 GO:0000166 GO:0036402

Computed_GO_Functions: ATP binding hydrolase activity nucleotide binding proteasome-activating ATPase activity

Computed_GO_Process_IDs: GO:1901800 GO:0030163

Computed_GO_Processes: positive regulation of proteasomal protein catabolic process protein catabolic process

Curated_GO_Component_IDs: GO:0031597 GO:0031595 GO:0008540

Curated_GO_Components: cytosolic proteasome complex nuclear proteasome complex proteasome regulatory particle, base subcomplex

Curated_GO_Function_IDs: GO:0016887 GO:0017025 GO:0036402

Curated_GO_Functions: ATPase activity TBP-class protein binding proteasome-activating ATPase activity

Curated_GO_Processes: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly proteasome regulatory particle assembly ubiquitin-dependent ERAD pathway ubiquitin-dependent protein catabolic process

Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

CATH

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

YOR117W

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India