YOR361C | translation initiation factor eIF3 subunit b

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  • Fasta :-

    >YOR361C MKNFLPRTLKNIYELYFNNISVHSIVSRNTQLKRSKIIQMTTETFEDIKLEDIPVDDIDF SDLEEQYKVTEEFNFDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEAT GKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTMKDVERYNSDDFDTEFREPDM PTFVPSSSLKSWLMDDKVRDQFVLQDDVKTSVFWNSMFNEEDSLVESRENWSTNYVRFSP KGTYLFSYHQQGVTAWGGPNFDRLRRFYHPDVRNSSVSPNEKYLVTFSTEPIIVEEDNEF SPFTKKNEGHQLCIWDIASGLLMATFPVIKSPYLKWPLVRWSYNDKYCARMVGDSLIVHD ATKNFMPLEAKALKPSGIRDFSFAPEGVKLQPFRNGDEPSVLLAYWTPETNNSACTATIA EVPRGRVLKTVNLVQVSNVTLHWQNQAEFLCFNVERHTKSGKTQFSNLQICRLTERDIPV EKVELKDSVFEFGWEPHGNRFVTISVHEVADMNYAIPANTIRFYAPETKEKTDVIKRWSL VKEIPKTFANTVSWSPAGRFVVVGALVGPNMRRSDLQFYDMDYPGEKNINDNNDVSASLK DVAHPTYSAATNITWDPSGRYVTAWSSSLKHKVEHGYKIFNIAGNLVKEDIIAGFKNFAW RPRPASILSNAERKKVRKNLREWSAQFEEQDAMEADTAMRDLILHQRELLKQWTEYREKI GQEMEKSMNFKIFDVQPEDASDDFTTIEEIVEEVLEETKEKVE
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/YOR361C.fa Sequence name : YOR361C Sequence length : 763 VALUES OF COMPUTED PARAMETERS Coef20 : 3.781 CoefTot : -1.130 ChDiff : -14 ZoneTo : 42 KR : 7 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.476 1.659 0.242 0.656 MesoH : -0.732 0.233 -0.448 0.182 MuHd_075 : 42.028 30.113 13.350 9.167 MuHd_095 : 50.083 31.953 14.349 10.853 MuHd_100 : 42.267 27.149 12.268 9.172 MuHd_105 : 31.647 21.182 8.751 7.710 Hmax_075 : 8.283 18.200 3.650 6.277 Hmax_095 : 16.300 16.800 2.311 6.720 Hmax_100 : 16.300 15.800 1.965 5.640 Hmax_105 : 2.900 8.600 0.897 3.760 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.2157 0.7843 DFMC : 0.2909 0.7091 This protein is probably imported in mitochondria. f(Ser) = 0.0952 f(Arg) = 0.0714 CMi = 0.56022 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 763 YOR361C MKNFLPRTLKNIYELYFNNISVHSIVSRNTQLKRSKIIQMTTETFEDIKLEDIPVDDIDFSDLEEQYKVTEEFNFDQYIV 80 VNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTM 160 KDVERYNSDDFDTEFREPDMPTFVPSSSLKSWLMDDKVRDQFVLQDDVKTSVFWNSMFNEEDSLVESRENWSTNYVRFSP 240 KGTYLFSYHQQGVTAWGGPNFDRLRRFYHPDVRNSSVSPNEKYLVTFSTEPIIVEEDNEFSPFTKKNEGHQLCIWDIASG 320 LLMATFPVIKSPYLKWPLVRWSYNDKYCARMVGDSLIVHDATKNFMPLEAKALKPSGIRDFSFAPEGVKLQPFRNGDEPS 400 VLLAYWTPETNNSACTATIAEVPRGRVLKTVNLVQVSNVTLHWQNQAEFLCFNVERHTKSGKTQFSNLQICRLTERDIPV 480 EKVELKDSVFEFGWEPHGNRFVTISVHEVADMNYAIPANTIRFYAPETKEKTDVIKRWSLVKEIPKTFANTVSWSPAGRF 560 VVVGALVGPNMRRSDLQFYDMDYPGEKNINDNNDVSASLKDVAHPTYSAATNITWDPSGRYVTAWSSSLKHKVEHGYKIF 640 NIAGNLVKEDIIAGFKNFAWRPRPASILSNAERKKVRKNLREWSAQFEEQDAMEADTAMRDLILHQRELLKQWTEYREKI 720 GQEMEKSMNFKIFDVQPEDASDDFTTIEEIVEEVLEETKEKVE 800 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ................................................................................ 720 ........................................... 800 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ YOR361C 2 -----MK|NF 0.056 . YOR361C 7 MKNFLPR|TL 0.110 . YOR361C 10 FLPRTLK|NI 0.099 . YOR361C 28 VHSIVSR|NT 0.100 . YOR361C 33 SRNTQLK|RS 0.085 . YOR361C 34 RNTQLKR|SK 0.357 . YOR361C 36 TQLKRSK|II 0.069 . YOR361C 49 ETFEDIK|LE 0.057 . YOR361C 68 DLEEQYK|VT 0.065 . YOR361C 91 PVIPSAK|VP 0.052 . YOR361C 96 AKVPVLK|KA 0.077 . YOR361C 97 KVPVLKK|AL 0.085 . YOR361C 105 LTSLFSK|AG 0.070 . YOR361C 108 LFSKAGK|VV 0.086 . YOR361C 122 IDEATGK|TK 0.064 . YOR361C 124 EATGKTK|GF 0.072 . YOR361C 138 GSMNDAK|KI 0.098 . YOR361C 139 SMNDAKK|II 0.099 . YOR361C 142 DAKKIIK|SF 0.084 . YOR361C 147 IKSFHGK|RL 0.085 . YOR361C 148 KSFHGKR|LD 0.139 . YOR361C 152 GKRLDLK|HR 0.059 . YOR361C 154 RLDLKHR|LF 0.080 . YOR361C 161 LFLYTMK|DV 0.086 . YOR361C 165 TMKDVER|YN 0.141 . YOR361C 176 DFDTEFR|EP 0.066 . YOR361C 190 VPSSSLK|SW 0.082 . YOR361C 197 SWLMDDK|VR 0.058 . YOR361C 199 LMDDKVR|DQ 0.109 . YOR361C 209 VLQDDVK|TS 0.058 . YOR361C 228 DSLVESR|EN 0.072 . YOR361C 237 WSTNYVR|FS 0.102 . YOR361C 241 YVRFSPK|GT 0.068 . YOR361C 263 GGPNFDR|LR 0.078 . YOR361C 265 PNFDRLR|RF 0.066 . YOR361C 266 NFDRLRR|FY 0.407 . YOR361C 273 FYHPDVR|NS 0.084 . YOR361C 282 SVSPNEK|YL 0.066 . YOR361C 305 EFSPFTK|KN 0.075 . YOR361C 306 FSPFTKK|NE 0.112 . YOR361C 330 ATFPVIK|SP 0.065 . YOR361C 335 IKSPYLK|WP 0.058 . YOR361C 340 LKWPLVR|WS 0.082 . YOR361C 346 RWSYNDK|YC 0.077 . YOR361C 350 NDKYCAR|MV 0.243 . YOR361C 363 IVHDATK|NF 0.065 . YOR361C 371 FMPLEAK|AL 0.062 . YOR361C 374 LEAKALK|PS 0.069 . YOR361C 379 LKPSGIR|DF 0.101 . YOR361C 389 FAPEGVK|LQ 0.050 . YOR361C 394 VKLQPFR|NG 0.072 . YOR361C 424 TIAEVPR|GR 0.089 . YOR361C 426 AEVPRGR|VL 0.084 . YOR361C 429 PRGRVLK|TV 0.260 . YOR361C 456 LCFNVER|HT 0.117 . YOR361C 459 NVERHTK|SG 0.201 . YOR361C 462 RHTKSGK|TQ 0.064 . YOR361C 472 SNLQICR|LT 0.093 . YOR361C 476 ICRLTER|DI 0.097 . YOR361C 482 RDIPVEK|VE 0.053 . YOR361C 486 VEKVELK|DS 0.070 . YOR361C 500 WEPHGNR|FV 0.137 . YOR361C 522 IPANTIR|FY 0.118 . YOR361C 529 FYAPETK|EK 0.065 . YOR361C 531 APETKEK|TD 0.065 . YOR361C 536 EKTDVIK|RW 0.068 . YOR361C 537 KTDVIKR|WS 0.139 . YOR361C 542 KRWSLVK|EI 0.067 . YOR361C 546 LVKEIPK|TF 0.058 . YOR361C 559 SWSPAGR|FV 0.187 . YOR361C 572 LVGPNMR|RS 0.080 . YOR361C 573 VGPNMRR|SD 0.155 . YOR361C 587 MDYPGEK|NI 0.065 . YOR361C 600 DVSASLK|DV 0.087 . YOR361C 620 TWDPSGR|YV 0.151 . YOR361C 630 AWSSSLK|HK 0.068 . YOR361C 632 SSSLKHK|VE 0.074 . YOR361C 638 KVEHGYK|IF 0.063 . YOR361C 648 IAGNLVK|ED 0.062 . YOR361C 656 DIIAGFK|NF 0.051 . YOR361C 661 FKNFAWR|PR 0.096 . YOR361C 663 NFAWRPR|PA 0.126 . YOR361C 673 ILSNAER|KK 0.089 . YOR361C 674 LSNAERK|KV 0.154 . YOR361C 675 SNAERKK|VR 0.094 . YOR361C 677 AERKKVR|KN 0.090 . YOR361C 678 ERKKVRK|NL 0.109 . YOR361C 681 KVRKNLR|EW 0.139 . YOR361C 700 EADTAMR|DL 0.093 . YOR361C 707 DLILHQR|EL 0.081 . YOR361C 711 HQRELLK|QW 0.067 . YOR361C 717 KQWTEYR|EK 0.108 . YOR361C 719 WTEYREK|IG 0.063 . YOR361C 726 IGQEMEK|SM 0.083 . YOR361C 731 EKSMNFK|IF 0.088 . YOR361C 759 EVLEETK|EK 0.053 . YOR361C 761 LEETKEK|VE 0.063 . ____________________________^_________________

  • Fasta :-

    >YOR361C ATGAAAAATTTTCTTCCACGCACATTGAAAAATATTTACGAATTATATTTCAATAACATC TCAGTACATAGTATAGTATCTCGCAACACACAGCTCAAAAGGTCAAAGATAATTCAAATG ACTACCGAGACTTTCGAAGACATTAAGCTAGAGGACATCCCTGTTGACGACATTGATTTT TCCGACCTGGAAGAACAATACAAGGTCACTGAAGAATTCAATTTCGATCAGTACATCGTC GTTAATGGTGCCCCAGTCATCCCATCCGCCAAAGTTCCTGTTTTGAAAAAGGCTTTGACT TCTTTGTTTTCCAAAGCTGGTAAAGTTGTTAACATGGAATTTCCAATTGATGAAGCCACT GGTAAGACGAAAGGTTTTCTCTTCGTGGAATGTGGCTCAATGAACGATGCTAAAAAAATT ATCAAGAGTTTCCACGGTAAAAGACTGGATTTAAAACATCGTTTGTTTCTTTATACTATG AAAGATGTTGAAAGATATAATTCTGACGACTTTGACACCGAATTCAGGGAGCCTGATATG CCTACATTCGTTCCATCTAGTTCCTTAAAATCCTGGTTAATGGACGACAAAGTGAGAGAT CAGTTTGTATTACAAGATGACGTGAAGACTAGTGTGTTCTGGAACTCTATGTTCAATGAA GAAGATTCTTTGGTGGAATCTAGAGAGAACTGGTCTACCAATTATGTTAGATTCTCCCCA AAGGGTACCTATTTGTTTTCTTACCATCAACAGGGTGTAACTGCATGGGGTGGTCCAAAC TTCGATCGTTTGAGAAGATTCTATCATCCAGATGTAAGAAACTCTTCCGTCTCTCCGAAT GAAAAGTACCTGGTCACTTTCTCCACGGAACCAATCATTGTAGAAGAAGATAACGAATTC TCTCCATTTACCAAGAAAAATGAGGGTCATCAATTATGCATCTGGGACATTGCTTCTGGT CTGTTGATGGCAACTTTCCCAGTGATAAAGAGCCCATATCTGAAATGGCCTTTAGTTAGA TGGTCTTATAATGATAAATATTGTGCTCGTATGGTTGGAGACAGTTTAATAGTTCACGAT GCTACTAAAAACTTCATGCCATTAGAAGCTAAGGCTTTGAAGCCTTCTGGTATTAGAGAT TTCTCATTTGCTCCAGAAGGTGTTAAATTACAACCATTCAGAAACGGTGACGAGCCTTCT GTTTTATTGGCTTATTGGACTCCTGAGACTAATAATTCCGCTTGTACTGCTACCATTGCT GAAGTTCCTCGCGGTAGAGTGCTAAAAACCGTTAACTTAGTTCAAGTCTCCAACGTAACT CTGCACTGGCAAAACCAAGCTGAGTTCCTGTGCTTCAATGTCGAACGTCACACAAAGTCT GGTAAGACTCAATTCAGTAATCTACAAATTTGTAGGTTGACTGAAAGAGATATACCAGTT GAAAAGGTTGAATTGAAAGATAGTGTCTTTGAATTCGGTTGGGAACCCCACGGAAATAGA TTTGTTACAATTTCTGTTCATGAAGTAGCTGATATGAATTATGCTATCCCAGCAAATACA ATCAGATTTTACGCTCCAGAAACTAAAGAAAAGACTGACGTAATTAAAAGATGGAGCTTG GTCAAAGAAATTCCAAAAACTTTTGCCAACACTGTTTCTTGGTCTCCAGCGGGTAGATTT GTGGTTGTAGGTGCTTTAGTGGGTCCAAACATGCGTAGATCAGACCTACAATTTTACGAT ATGGACTATCCAGGTGAAAAGAATATTAATGACAATAATGATGTTTCAGCTTCTTTGAAA GATGTTGCTCATCCTACCTACTCTGCGGCTACTAATATCACTTGGGATCCATCTGGTAGA TACGTTACCGCATGGTCAAGTTCTTTGAAACACAAGGTGGAGCATGGTTACAAAATTTTC AATATTGCTGGTAACTTAGTTAAAGAAGACATCATTGCTGGCTTCAAGAACTTTGCCTGG AGACCAAGGCCAGCTTCCATTTTGTCTAACGCCGAAAGGAAAAAGGTTAGGAAAAACTTG AGGGAATGGTCTGCCCAATTCGAAGAGCAAGATGCAATGGAAGCTGACACCGCCATGAGA GATTTGATTCTACACCAACGTGAATTATTGAAGCAATGGACCGAATATAGAGAAAAAATT GGCCAAGAAATGGAAAAATCTATGAATTTCAAAATCTTTGACGTTCAACCAGAAGATGCC AGCGATGACTTTACCACCATCGAAGAGATAGTTGAAGAAGTTTTGGAAGAAACAAAGGAA AAGGTCGAATAA
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  • Fasta :-

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  • title: polypeptide substrate binding site
  • coordinates: V81,A84,K91,V94,L95,K97,A98,L99,S101,L102,K105,S143,F144,H145,G146,R148,L149,R154,L155
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IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
YOR361C276 SVRNSSVSPN0.993unspYOR361C276 SVRNSSVSPN0.993unspYOR361C276 SVRNSSVSPN0.993unspYOR361C278 SNSSVSPNEK0.997unspYOR361C598 SDVSASLKDV0.991unspYOR361C223 SNEEDSLVES0.993unspYOR361C239 SYVRFSPKGT0.998unsp

YOR361C      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India