cgd1_1270 | PPPDE peptidase/PUB domain containing protein

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0005515      

  • Computed_GO_Functions:  protein binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
cgd1_1270OTHER0.9998310.0001390.000030
No Results

  • Fasta :-

    >cgd1_1270 MSDIGEKVELHIYDLSNGMASQLSPMLLGRTIEAIYHTGVFVYGYEYFYGGGIVCVRPEE ITRLYGLKPIRTLTLGTTKKSQKELNSHLESISNEFNSDNYDLLNHNCNHFSDNIVKFLI GEGIPSYILDLPNEVMRTPFGSMILPMLQKAQKSQAIRSVANVWNTNGINPSNVINKTAE EFSYLSSGSSSTGSSRTSHHSRSSGSSDSISEFSKKLSTVSNKYGWQCQRVLETLETILF NIISNPGDLRYRSIKSTSNTLKSVLMSIDEGLELLFLVGFREKQAEDQLRYEIQLSQPLS REEREQLETQINLVRRTLSSLGMASEQETQESACPESKASNGSKSESTIDYVKLLAEVKG MGFEDNKKILQALHKTNGDISRTVSILLDEQSQ
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/cgd1_1270.fa Sequence name : cgd1_1270 Sequence length : 393 VALUES OF COMPUTED PARAMETERS Coef20 : 3.142 CoefTot : 0.112 ChDiff : -7 ZoneTo : 2 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.935 1.606 0.186 0.630 MesoH : -0.486 0.204 -0.321 0.219 MuHd_075 : 11.885 8.133 3.956 3.029 MuHd_095 : 35.171 23.235 9.682 6.040 MuHd_100 : 39.732 24.957 10.692 6.984 MuHd_105 : 35.412 20.960 9.425 6.419 Hmax_075 : -1.400 5.483 -1.854 2.960 Hmax_095 : 16.600 17.700 3.463 5.940 Hmax_100 : 16.600 17.700 3.463 5.940 Hmax_105 : 5.300 9.700 0.050 3.800 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9538 0.0462 DFMC : 0.9823 0.0177
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 393 cgd1_1270 MSDIGEKVELHIYDLSNGMASQLSPMLLGRTIEAIYHTGVFVYGYEYFYGGGIVCVRPEEITRLYGLKPIRTLTLGTTKK 80 SQKELNSHLESISNEFNSDNYDLLNHNCNHFSDNIVKFLIGEGIPSYILDLPNEVMRTPFGSMILPMLQKAQKSQAIRSV 160 ANVWNTNGINPSNVINKTAEEFSYLSSGSSSTGSSRTSHHSRSSGSSDSISEFSKKLSTVSNKYGWQCQRVLETLETILF 240 NIISNPGDLRYRSIKSTSNTLKSVLMSIDEGLELLFLVGFREKQAEDQLRYEIQLSQPLSREEREQLETQINLVRRTLSS 320 LGMASEQETQESACPESKASNGSKSESTIDYVKLLAEVKGMGFEDNKKILQALHKTNGDISRTVSILLDEQSQ 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ......................................................................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ cgd1_1270 7 MSDIGEK|VE 0.054 . cgd1_1270 30 SPMLLGR|TI 0.164 . cgd1_1270 57 GGIVCVR|PE 0.080 . cgd1_1270 63 RPEEITR|LY 0.081 . cgd1_1270 68 TRLYGLK|PI 0.070 . cgd1_1270 71 YGLKPIR|TL 0.075 . cgd1_1270 79 LTLGTTK|KS 0.062 . cgd1_1270 80 TLGTTKK|SQ 0.143 . cgd1_1270 83 TTKKSQK|EL 0.075 . cgd1_1270 117 FSDNIVK|FL 0.069 . cgd1_1270 137 LPNEVMR|TP 0.103 . cgd1_1270 150 ILPMLQK|AQ 0.056 . cgd1_1270 153 MLQKAQK|SQ 0.071 . cgd1_1270 158 QKSQAIR|SV 0.281 . cgd1_1270 177 PSNVINK|TA 0.073 . cgd1_1270 196 SSTGSSR|TS 0.108 . cgd1_1270 202 RTSHHSR|SS 0.309 . cgd1_1270 215 SISEFSK|KL 0.080 . cgd1_1270 216 ISEFSKK|LS 0.100 . cgd1_1270 223 LSTVSNK|YG 0.077 . cgd1_1270 230 YGWQCQR|VL 0.094 . cgd1_1270 250 SNPGDLR|YR 0.082 . cgd1_1270 252 PGDLRYR|SI 0.100 . cgd1_1270 255 LRYRSIK|ST 0.400 . cgd1_1270 262 STSNTLK|SV 0.139 . cgd1_1270 281 LFLVGFR|EK 0.072 . cgd1_1270 283 LVGFREK|QA 0.087 . cgd1_1270 290 QAEDQLR|YE 0.087 . cgd1_1270 301 LSQPLSR|EE 0.107 . cgd1_1270 304 PLSREER|EQ 0.202 . cgd1_1270 315 TQINLVR|RT 0.090 . cgd1_1270 316 QINLVRR|TL 0.187 . cgd1_1270 338 SACPESK|AS 0.065 . cgd1_1270 344 KASNGSK|SE 0.111 . cgd1_1270 353 STIDYVK|LL 0.061 . cgd1_1270 359 KLLAEVK|GM 0.062 . cgd1_1270 367 MGFEDNK|KI 0.066 . cgd1_1270 368 GFEDNKK|IL 0.087 . cgd1_1270 375 ILQALHK|TN 0.082 . cgd1_1270 382 TNGDISR|TV 0.177 . ____________________________^_________________

  • Fasta :-

    >cgd1_1270 GATAATATTTTAAATTTCACTGTTGAATTACAAATGAGTGATATAGGGGAAAAAGTGGAG CTTCATATTTACGACTTAAGTAATGGAATGGCATCTCAACTATCCCCAATGCTTTTGGGA AGAACGATTGAAGCTATTTATCATACAGGAGTATTTGTTTATGGGTATGAATACTTTTAT GGAGGTGGGATAGTTTGTGTTAGACCAGAAGAGATTACCAGATTGTATGGACTAAAACCT ATTCGAACATTGACATTGGGAACCACGAAAAAGTCTCAGAAAGAACTAAATAGCCACTTG GAATCAATTTCTAATGAATTTAACAGCGATAACTACGACCTTTTAAATCATAACTGTAAT CACTTTTCAGATAATATAGTCAAGTTTTTGATAGGAGAAGGTATTCCATCTTATATTTTA GATCTGCCAAATGAGGTGATGAGAACTCCTTTTGGTTCAATGATTCTTCCAATGCTACAA AAAGCGCAGAAGAGTCAGGCAATTCGCTCAGTTGCAAATGTTTGGAACACGAATGGAATC AACCCCTCAAATGTGATCAATAAAACTGCAGAGGAGTTCAGTTATTTGAGTTCTGGGTCA AGCTCTACAGGGAGTAGTAGAACAAGCCATCACTCTAGATCTTCTGGATCTTCAGATAGT ATTTCTGAGTTTTCTAAGAAGCTGAGCACTGTTTCCAACAAGTATGGATGGCAGTGCCAA AGAGTATTAGAAACTCTCGAAACTATACTTTTCAATATTATAAGTAATCCCGGTGACTTA AGATACAGAAGCATTAAATCAACAAGTAATACACTAAAGAGTGTATTAATGAGTATAGAT GAAGGCCTTGAATTACTATTCTTAGTTGGTTTCCGTGAGAAGCAAGCGGAGGATCAACTT AGATACGAAATACAACTAAGCCAACCACTGAGCAGAGAGGAAAGAGAGCAATTAGAAACT CAAATTAACTTGGTCAGGCGTACCTTAAGCTCCCTGGGGATGGCAAGTGAGCAAGAAACG CAAGAGTCAGCATGCCCAGAATCCAAAGCAAGCAATGGATCAAAGTCAGAAAGTACAATT GACTATGTAAAACTATTAGCAGAAGTGAAAGGAATGGGATTTGAGGACAATAAGAAAATA CTACAAGCCCTTCACAAGACTAATGGAGACATCTCCCGCACCGTGTCAATTCTGCTGGAT GAACAGAGCCAATAG
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  • Fasta :-

    MSDIGEKVELHIYDLSNGMASQLSPMLLGRTIEAIYHTGVFVYGYEYFYGGGIVCVRPEE ITRLYGLKPIRTLTLGTTKKSQKELNSHLESISNEFNSDNYDLLNHNCNHFSDNIVKFLI GEGIPSYILDLPNEVMRTPFGSMILPMLQKAQKSQAIRSVANVWNTNGINPSNVINKTAE EFSYLSSGSSSTGSSRTSHHSRSSGSSDSISEFSKKLSTVSNKYGWQCQRVLETLETILF NIISNPGDLRYRSIKSTSNTLKSVLMSIDEGLELLFLVGFREKQAEDQLRYEIQLSQPLS REEREQLETQINLVRRTLSSLGMASEQETQESACPESKASNGSKSESTIDYVKLLAEVKG MGFEDNKKILQALHKTNGDISRTVSILLDEQSQ

  • title: peptide binding site
  • coordinates: T234,T237,I238,N241,R250,Y251,S253,I254,K255,S258,T260,V264
IDSitePositionGscoreIscoreIDSitePositionGscoreIscoreIDSitePositionGscoreIscoreIDSitePositionGscoreIscoreIDSitePositionGscoreIscoreIDSitePositionGscoreIscore
cgd1_1270T1970.6260.021cgd1_1270T1920.5870.041cgd1_1270S1980.5280.032cgd1_1270S2010.5080.046cgd1_1270S2040.5060.038cgd1_1270S1950.5010.022
IDSitePositionGscoreIscoreIDSitePositionGscoreIscoreIDSitePositionGscoreIscoreIDSitePositionGscoreIscoreIDSitePositionGscoreIscoreIDSitePositionGscoreIscore
cgd1_1270T1970.6260.021cgd1_1270T1920.5870.041cgd1_1270S1980.5280.032cgd1_1270S2010.5080.046cgd1_1270S2040.5060.038cgd1_1270S1950.5010.022
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
cgd1_1270198 SSSRTSHHSR0.994unspcgd1_1270198 SSSRTSHHSR0.994unspcgd1_1270198 SSSRTSHHSR0.994unspcgd1_1270209 SGSSDSISEF0.991unspcgd1_1270253 SLRYRSIKST0.997unspcgd1_1270300 SSQPLSREER0.994unspcgd1_1270343 SASNGSKSES0.99unspcgd1_1270347 SSKSESTIDY0.997unspcgd1_127081 STTKKSQKEL0.996unspcgd1_1270191 SSGSSSTGSS0.992unsp

cgd1_1270      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India