cgd1_220 | Glycosylphosphatidylinositol transamidase

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0008233      

  • Computed_GO_Functions:  peptidase activity      

  • Computed_GO_Process_IDs:  GO:0006508      

  • Computed_GO_Processes:  proteolysis      

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
cgd1_220SP0.1394170.8602190.000364CS pos: 24-25. LLT-RT. Pr: 0.2635
No Results

  • Fasta :-

    >cgd1_220 MKIFSAFTILLFYSLEILFQGLLTRTKTFEYSFLQLKSQNNWAVIVSTSRYWYNYRHNTN ALSFYNYLRQNGFRDDRIILMLAENIPCNTRNSIPGGVYSEDFDFFYNLNNHTQTMECAD VDYREDEVTVSNFIKVLTNKHDDSVPNKKRLLSDEDSNIFIFLTGHGGDGFLKFQDFEEM TSFELANAIKEMKAHKRFKKMFIISETCQASTLHNHLDFEDVYAIGCSSLGESSYSKHYK VEIGVASIDRFTHFSLADFKNLNRNKLMPIASLIGKYSVFQLKSTPQLKYKPGKTDIKNV YVNEFFFPNIEKLFSLNIGNLILNHKNIKEPIKQVLNEGASKYLNCSLLYHTLKRYNDLD LIDSLSNCHFKNTLKKAIIFSQKRYVFNSKFSSKKMIDNKSLMLIKAIFGLTFILILVFI LSYYSL
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/cgd1_220.fa Sequence name : cgd1_220 Sequence length : 426 VALUES OF COMPUTED PARAMETERS Coef20 : 4.569 CoefTot : -1.099 ChDiff : 10 ZoneTo : 74 KR : 8 DE : 2 CleavSite : 71 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.412 2.771 0.483 0.931 MesoH : -0.656 0.447 -0.455 0.180 MuHd_075 : 36.822 23.648 8.793 6.883 MuHd_095 : 21.210 20.139 6.440 5.640 MuHd_100 : 25.199 20.103 7.026 5.689 MuHd_105 : 29.199 18.872 6.891 6.582 Hmax_075 : 19.100 14.600 2.361 5.700 Hmax_095 : 21.612 14.525 2.923 5.346 Hmax_100 : 20.400 12.800 0.198 5.010 Hmax_105 : 10.850 8.750 1.714 3.040 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.5405 0.4595 DFMC : 0.3865 0.6135 This protein is probably imported in mitochondria. f(Ser) = 0.0946 f(Arg) = 0.0676 CMi = 0.57471 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 426 cgd1_220 MKIFSAFTILLFYSLEILFQGLLTRTKTFEYSFLQLKSQNNWAVIVSTSRYWYNYRHNTNALSFYNYLRQNGFRDDRIIL 80 MLAENIPCNTRNSIPGGVYSEDFDFFYNLNNHTQTMECADVDYREDEVTVSNFIKVLTNKHDDSVPNKKRLLSDEDSNIF 160 IFLTGHGGDGFLKFQDFEEMTSFELANAIKEMKAHKRFKKMFIISETCQASTLHNHLDFEDVYAIGCSSLGESSYSKHYK 240 VEIGVASIDRFTHFSLADFKNLNRNKLMPIASLIGKYSVFQLKSTPQLKYKPGKTDIKNVYVNEFFFPNIEKLFSLNIGN 320 LILNHKNIKEPIKQVLNEGASKYLNCSLLYHTLKRYNDLDLIDSLSNCHFKNTLKKAIIFSQKRYVFNSKFSSKKMIDNK 400 SLMLIKAIFGLTFILILVFILSYYSL 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 .......................... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ cgd1_220 2 -----MK|IF 0.067 . cgd1_220 25 FQGLLTR|TK 0.070 . cgd1_220 27 GLLTRTK|TF 0.063 . cgd1_220 37 YSFLQLK|SQ 0.064 . cgd1_220 50 VIVSTSR|YW 0.088 . cgd1_220 56 RYWYNYR|HN 0.092 . cgd1_220 69 SFYNYLR|QN 0.088 . cgd1_220 74 LRQNGFR|DD 0.149 . cgd1_220 77 NGFRDDR|II 0.141 . cgd1_220 91 NIPCNTR|NS 0.080 . cgd1_220 124 CADVDYR|ED 0.076 . cgd1_220 135 TVSNFIK|VL 0.079 . cgd1_220 140 IKVLTNK|HD 0.066 . cgd1_220 148 DDSVPNK|KR 0.060 . cgd1_220 149 DSVPNKK|RL 0.087 . cgd1_220 150 SVPNKKR|LL 0.238 . cgd1_220 173 GGDGFLK|FQ 0.073 . cgd1_220 190 ELANAIK|EM 0.061 . cgd1_220 193 NAIKEMK|AH 0.063 . cgd1_220 196 KEMKAHK|RF 0.063 . cgd1_220 197 EMKAHKR|FK 0.224 . cgd1_220 199 KAHKRFK|KM 0.078 . cgd1_220 200 AHKRFKK|MF 0.484 . cgd1_220 237 GESSYSK|HY 0.070 . cgd1_220 240 SYSKHYK|VE 0.077 . cgd1_220 250 GVASIDR|FT 0.120 . cgd1_220 260 FSLADFK|NL 0.059 . cgd1_220 264 DFKNLNR|NK 0.064 . cgd1_220 266 KNLNRNK|LM 0.056 . cgd1_220 276 IASLIGK|YS 0.075 . cgd1_220 283 YSVFQLK|ST 0.076 . cgd1_220 289 KSTPQLK|YK 0.065 . cgd1_220 291 TPQLKYK|PG 0.075 . cgd1_220 294 LKYKPGK|TD 0.069 . cgd1_220 298 PGKTDIK|NV 0.075 . cgd1_220 312 FFPNIEK|LF 0.059 . cgd1_220 326 NLILNHK|NI 0.062 . cgd1_220 329 LNHKNIK|EP 0.070 . cgd1_220 333 NIKEPIK|QV 0.081 . cgd1_220 342 LNEGASK|YL 0.068 . cgd1_220 354 LLYHTLK|RY 0.060 . cgd1_220 355 LYHTLKR|YN 0.190 . cgd1_220 371 LSNCHFK|NT 0.075 . cgd1_220 375 HFKNTLK|KA 0.058 . cgd1_220 376 FKNTLKK|AI 0.135 . cgd1_220 383 AIIFSQK|RY 0.054 . cgd1_220 384 IIFSQKR|YV 0.291 . cgd1_220 390 RYVFNSK|FS 0.073 . cgd1_220 394 NSKFSSK|KM 0.067 . cgd1_220 395 SKFSSKK|MI 0.139 . cgd1_220 400 KKMIDNK|SL 0.087 . cgd1_220 406 KSLMLIK|AI 0.065 . ____________________________^_________________

  • Fasta :-

    >cgd1_220 ATGAAGATCTTTTCAGCTTTTACTATTTTGTTATTCTATTCTTTAGAAATCCTTTTTCAA GGACTTCTCACAAGAACTAAAACATTTGAATATTCTTTTCTTCAACTAAAAAGCCAAAAC AATTGGGCAGTTATTGTGTCAACATCTAGATACTGGTATAATTATAGACATAACACAAAT GCACTAAGTTTTTATAATTATCTGAGGCAAAATGGCTTTAGAGATGACAGAATTATTTTA ATGTTGGCAGAAAATATTCCTTGTAATACTAGAAATTCAATTCCTGGTGGAGTGTACAGC GAAGACTTTGATTTTTTCTACAACTTAAACAATCATACACAAACTATGGAATGTGCAGAC GTAGACTACAGGGAAGATGAAGTTACTGTTTCAAATTTCATCAAAGTATTAACAAATAAG CACGATGACAGTGTTCCAAATAAAAAAAGACTTCTTTCAGATGAAGATTCAAATATATTT ATATTTCTAACAGGGCATGGAGGAGATGGATTTCTCAAATTTCAAGATTTTGAAGAAATG ACATCTTTTGAACTTGCTAATGCAATCAAAGAAATGAAAGCGCACAAAAGATTTAAAAAG ATGTTCATAATATCAGAAACTTGCCAGGCTTCAACACTTCATAACCACTTAGATTTTGAA GATGTTTATGCAATCGGATGTTCCAGTTTGGGCGAAAGCTCCTATAGTAAGCATTATAAA GTTGAAATAGGAGTTGCTTCAATTGATAGGTTCACACACTTTAGTTTGGCAGATTTTAAA AACTTGAATAGAAATAAGTTAATGCCCATAGCTAGTTTGATTGGGAAATATTCAGTATTT CAACTGAAGTCCACTCCCCAGCTAAAATACAAGCCCGGAAAAACAGATATAAAAAATGTA TATGTTAATGAGTTCTTTTTCCCAAATATTGAAAAACTTTTTTCTTTGAATATTGGAAAC TTAATCCTAAACCATAAAAACATCAAAGAGCCTATAAAACAAGTTTTAAATGAAGGGGCT TCAAAATACTTGAACTGTTCGTTATTATATCATACATTAAAAAGATATAATGATTTGGAT TTGATAGATTCGTTATCCAATTGTCATTTCAAAAATACACTAAAAAAAGCTATAATATTT TCTCAAAAAAGATATGTTTTTAATTCAAAATTCTCATCAAAAAAAATGATTGATAATAAA TCATTAATGTTAATCAAAGCCATTTTTGGATTAACTTTTATTTTAATATTAGTATTTATT TTATCATACTATAGTTTATAA
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  • Fasta :-

    MKIFSAFTILLFYSLEILFQGLLTRTKTFEYSFLQLKSQNNWAVIVSTSRYWYNYRHNTN ALSFYNYLRQNGFRDDRIILMLAENIPCNTRNSIPGGVYSEDFDFFYNLNNHTQTMECAD VDYREDEVTVSNFIKVLTNKHDDSVPNKKRLLSDEDSNIFIFLTGHGGDGFLKFQDFEEM TSFELANAIKEMKAHKRFKKMFIISETCQASTLHNHLDFEDVYAIGCSSLGESSYSKHYK VEIGVASIDRFTHFSLADFKNLNRNKLMPIASLIGKYSVFQLKSTPQLKYKPGKTDIKNV YVNEFFFPNIEKLFSLNIGNLILNHKNIKEPIKQVLNEGASKYLNCSLLYHTLKRYNDLD LIDSLSNCHFKNTLKKAIIFSQKRYVFNSKFSSKKMIDNKSLMLIKAIFGLTFILILVFI LSYYSL

    No Results
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IDSitePeptideScoreMethod
cgd1_220153 SKRLLSDEDS0.998unsp

cgd1_220      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India