cgd1_3360 | ATP-dependent zinc metalloprotease FtsH

_IDPredictionOTHERSPmTPCS_Position
cgd1_3360OTHER0.9998800.0000220.000098
No Results

  • Fasta :-

    >cgd1_3360 MKNKLNINKSKKIPYRKNFELNNKENTNFNSQNDRLKFDKFLISIFGISSLGLFSKMKYD EYKNTITLQEFVNLYLSKGYVDRIQVNNERGKAYLKENSKMKQVQDSMGLNTLNFVPIEY SHLISFKKIVNDLLPRAIGITIALLLLRSFSKSISNSASDRLIKSNYSSFSQVKNMNKNI KFSDIAGMKEAKQEIYELVEFLKDPKRFQDLGAKIPKGALLVGPPGTGKTLLAKAVAGEA NVPFFYISGSDFIEIFVGMGASRVRELFSQARKLSPSIVFIDEIDAVGRKRAKGGGFAAS SNDERESTLNQILVEMDGFTENNGVIVLAGTNRSDVLDPALTRPGRFDRIINIERPNLEE RKEIFKIHLKPLKLNEKLNKDELIKYLACLSPGFVGSEIRNLCNEAAIHAARRTSNSGVD LIDFDKASDRIIGGLKKLDGYLSPKEKKIVSLHESGHAIAGWYLKHADPILKVSIVPRTG GALGFAQMVPNELRLLSKEALLDKIAVLLAGRASEELYSESITTGAYDDLQKATMIANSM ITLYGMDPQIGLTTFNSNMNIDGTSSNSNNTSSYSLYKPYSEATSQAIDNCIRKMINDQY SRVKELLILKKEQVHKLSDLLLNKETVTNQDINECIGPMPSKL
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/cgd1_3360.fa Sequence name : cgd1_3360 Sequence length : 643 VALUES OF COMPUTED PARAMETERS Coef20 : 3.486 CoefTot : -1.255 ChDiff : 17 ZoneTo : 19 KR : 7 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.635 1.612 0.179 0.620 MesoH : -0.344 0.525 -0.291 0.274 MuHd_075 : 30.947 11.694 8.547 5.820 MuHd_095 : 12.938 4.374 2.020 2.511 MuHd_100 : 12.072 1.087 2.491 2.403 MuHd_105 : 15.640 5.029 3.838 3.138 Hmax_075 : 1.633 -0.700 -2.210 2.007 Hmax_095 : -10.412 -5.075 -5.714 -0.228 Hmax_100 : -11.800 -4.300 -5.600 -0.320 Hmax_105 : -8.167 -0.933 -4.214 0.537 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7984 0.2016 DFMC : 0.6527 0.3473
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 643 cgd1_3360 MKNKLNINKSKKIPYRKNFELNNKENTNFNSQNDRLKFDKFLISIFGISSLGLFSKMKYDEYKNTITLQEFVNLYLSKGY 80 VDRIQVNNERGKAYLKENSKMKQVQDSMGLNTLNFVPIEYSHLISFKKIVNDLLPRAIGITIALLLLRSFSKSISNSASD 160 RLIKSNYSSFSQVKNMNKNIKFSDIAGMKEAKQEIYELVEFLKDPKRFQDLGAKIPKGALLVGPPGTGKTLLAKAVAGEA 240 NVPFFYISGSDFIEIFVGMGASRVRELFSQARKLSPSIVFIDEIDAVGRKRAKGGGFAASSNDERESTLNQILVEMDGFT 320 ENNGVIVLAGTNRSDVLDPALTRPGRFDRIINIERPNLEERKEIFKIHLKPLKLNEKLNKDELIKYLACLSPGFVGSEIR 400 NLCNEAAIHAARRTSNSGVDLIDFDKASDRIIGGLKKLDGYLSPKEKKIVSLHESGHAIAGWYLKHADPILKVSIVPRTG 480 GALGFAQMVPNELRLLSKEALLDKIAVLLAGRASEELYSESITTGAYDDLQKATMIANSMITLYGMDPQIGLTTFNSNMN 560 IDGTSSNSNNTSSYSLYKPYSEATSQAIDNCIRKMINDQYSRVKELLILKKEQVHKLSDLLLNKETVTNQDINECIGPMP 640 SKL 720 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ... 720 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ cgd1_3360 2 -----MK|NK 0.061 . cgd1_3360 4 ---MKNK|LN 0.061 . cgd1_3360 9 NKLNINK|SK 0.064 . cgd1_3360 11 LNINKSK|KI 0.069 . cgd1_3360 12 NINKSKK|IP 0.105 . cgd1_3360 16 SKKIPYR|KN 0.101 . cgd1_3360 17 KKIPYRK|NF 0.077 . cgd1_3360 24 NFELNNK|EN 0.057 . cgd1_3360 35 FNSQNDR|LK 0.107 . cgd1_3360 37 SQNDRLK|FD 0.067 . cgd1_3360 40 DRLKFDK|FL 0.081 . cgd1_3360 56 SLGLFSK|MK 0.073 . cgd1_3360 58 GLFSKMK|YD 0.075 . cgd1_3360 63 MKYDEYK|NT 0.076 . cgd1_3360 78 VNLYLSK|GY 0.063 . cgd1_3360 83 SKGYVDR|IQ 0.099 . cgd1_3360 90 IQVNNER|GK 0.076 . cgd1_3360 92 VNNERGK|AY 0.069 . cgd1_3360 96 RGKAYLK|EN 0.062 . cgd1_3360 100 YLKENSK|MK 0.062 . cgd1_3360 102 KENSKMK|QV 0.111 . cgd1_3360 127 SHLISFK|KI 0.062 . cgd1_3360 128 HLISFKK|IV 0.166 . cgd1_3360 136 VNDLLPR|AI 0.092 . cgd1_3360 148 IALLLLR|SF 0.128 . cgd1_3360 152 LLRSFSK|SI 0.096 . cgd1_3360 161 SNSASDR|LI 0.116 . cgd1_3360 164 ASDRLIK|SN 0.209 . cgd1_3360 174 SSFSQVK|NM 0.066 . cgd1_3360 178 QVKNMNK|NI 0.059 . cgd1_3360 181 NMNKNIK|FS 0.093 . cgd1_3360 189 SDIAGMK|EA 0.069 . cgd1_3360 192 AGMKEAK|QE 0.069 . cgd1_3360 203 ELVEFLK|DP 0.064 . cgd1_3360 206 EFLKDPK|RF 0.055 . cgd1_3360 207 FLKDPKR|FQ 0.179 . cgd1_3360 214 FQDLGAK|IP 0.056 . cgd1_3360 217 LGAKIPK|GA 0.079 . cgd1_3360 229 GPPGTGK|TL 0.060 . cgd1_3360 234 GKTLLAK|AV 0.078 . cgd1_3360 263 VGMGASR|VR 0.066 . cgd1_3360 265 MGASRVR|EL 0.094 . cgd1_3360 272 ELFSQAR|KL 0.108 . cgd1_3360 273 LFSQARK|LS 0.080 . cgd1_3360 289 EIDAVGR|KR 0.084 . cgd1_3360 290 IDAVGRK|RA 0.105 . cgd1_3360 291 DAVGRKR|AK 0.290 . cgd1_3360 293 VGRKRAK|GG 0.077 . cgd1_3360 305 ASSNDER|ES 0.087 . cgd1_3360 333 VLAGTNR|SD 0.089 . cgd1_3360 343 LDPALTR|PG 0.065 . cgd1_3360 346 ALTRPGR|FD 0.207 . cgd1_3360 349 RPGRFDR|II 0.438 . cgd1_3360 355 RIINIER|PN 0.077 . cgd1_3360 361 RPNLEER|KE 0.088 . cgd1_3360 362 PNLEERK|EI 0.083 . cgd1_3360 366 ERKEIFK|IH 0.057 . cgd1_3360 370 IFKIHLK|PL 0.058 . cgd1_3360 373 IHLKPLK|LN 0.064 . cgd1_3360 377 PLKLNEK|LN 0.058 . cgd1_3360 380 LNEKLNK|DE 0.065 . cgd1_3360 385 NKDELIK|YL 0.061 . cgd1_3360 400 FVGSEIR|NL 0.080 . cgd1_3360 412 AAIHAAR|RT 0.120 . cgd1_3360 413 AIHAARR|TS 0.152 . cgd1_3360 426 DLIDFDK|AS 0.068 . cgd1_3360 430 FDKASDR|II 0.106 . cgd1_3360 436 RIIGGLK|KL 0.061 . cgd1_3360 437 IIGGLKK|LD 0.080 . cgd1_3360 445 DGYLSPK|EK 0.060 . cgd1_3360 447 YLSPKEK|KI 0.068 . cgd1_3360 448 LSPKEKK|IV 0.185 . cgd1_3360 465 IAGWYLK|HA 0.094 . cgd1_3360 472 HADPILK|VS 0.055 . cgd1_3360 478 KVSIVPR|TG 0.150 . cgd1_3360 494 MVPNELR|LL 0.079 . cgd1_3360 498 ELRLLSK|EA 0.060 . cgd1_3360 504 KEALLDK|IA 0.056 . cgd1_3360 512 AVLLAGR|AS 0.070 . cgd1_3360 532 AYDDLQK|AT 0.066 . cgd1_3360 578 SSYSLYK|PY 0.081 . cgd1_3360 593 AIDNCIR|KM 0.070 . cgd1_3360 594 IDNCIRK|MI 0.112 . cgd1_3360 602 INDQYSR|VK 0.064 . cgd1_3360 604 DQYSRVK|EL 0.059 . cgd1_3360 610 KELLILK|KE 0.052 . cgd1_3360 611 ELLILKK|EQ 0.084 . cgd1_3360 616 KKEQVHK|LS 0.065 . cgd1_3360 624 SDLLLNK|ET 0.058 . cgd1_3360 642 IGPMPSK|L- 0.062 . ____________________________^_________________

  • Fasta :-

    >cgd1_3360 ATGAAAAATAAGTTGAATATCAACAAAAGTAAAAAAATCCCATATAGAAAGAATTTTGAA TTAAATAATAAAGAAAATACCAATTTTAATAGCCAAAATGATAGATTAAAATTTGATAAG TTTTTAATTTCAATATTTGGGATTTCAAGTCTTGGATTATTTTCAAAGATGAAATATGAT GAATATAAAAATACCATAACTCTTCAAGAATTTGTGAATTTATACTTGAGCAAAGGTTAT GTTGATAGAATTCAAGTAAATAATGAAAGAGGTAAAGCTTACTTGAAAGAAAATAGTAAA ATGAAACAAGTACAAGATTCAATGGGTTTGAATACTTTAAATTTTGTTCCAATAGAATAC TCTCATTTAATATCATTTAAAAAAATTGTGAATGATTTACTTCCAAGAGCAATAGGAATT ACAATAGCTTTATTATTATTAAGATCTTTCTCAAAATCTATAAGTAATTCAGCTTCAGAT AGATTAATTAAATCAAATTATTCAAGTTTTAGCCAAGTTAAAAATATGAATAAAAATATT AAATTTAGTGATATTGCTGGAATGAAAGAAGCCAAACAAGAAATATATGAATTGGTAGAA TTCTTAAAAGATCCAAAAAGATTTCAAGATCTTGGTGCAAAAATACCAAAAGGTGCTTTA TTGGTAGGACCACCAGGTACCGGTAAAACATTATTGGCAAAAGCTGTTGCTGGTGAAGCT AATGTACCATTTTTTTATATATCTGGAAGTGATTTTATTGAGATTTTTGTTGGAATGGGT GCAAGTAGAGTAAGAGAATTATTTTCACAGGCAAGAAAATTATCTCCAAGTATTGTTTTT ATTGATGAAATTGATGCAGTTGGAAGAAAGCGTGCAAAAGGGGGTGGATTTGCTGCTTCA TCTAATGATGAGAGAGAAAGCACTCTTAATCAGATTCTTGTAGAAATGGATGGATTTACT GAAAATAATGGAGTAATAGTTTTAGCAGGAACAAATCGTTCTGATGTATTAGATCCCGCA TTAACACGTCCAGGAAGATTTGATAGGATTATTAATATTGAAAGACCAAATCTTGAAGAG CGTAAAGAGATTTTTAAGATCCATCTAAAACCTTTAAAGTTGAATGAAAAATTGAATAAA GATGAGTTAATTAAATATCTTGCTTGCTTATCTCCAGGTTTTGTTGGATCTGAAATTAGA AATTTATGTAATGAAGCTGCTATACATGCAGCAAGGCGAACTAGTAATTCTGGAGTTGAT TTGATTGATTTTGATAAAGCATCTGATAGAATTATTGGCGGTCTTAAGAAATTGGATGGT TATCTTTCACCAAAAGAGAAGAAAATTGTTAGTTTACATGAATCTGGTCATGCAATTGCT GGTTGGTATTTAAAACATGCTGATCCTATATTAAAAGTTTCTATAGTACCAAGAACAGGA GGTGCTTTAGGATTTGCTCAAATGGTTCCAAATGAATTAAGACTTCTTTCAAAAGAGGCT TTGCTTGATAAAATTGCAGTTCTATTAGCAGGAAGGGCTTCTGAAGAGTTATATTCAGAA TCGATTACAACAGGTGCATATGATGATCTCCAAAAAGCTACAATGATTGCTAATTCAATG ATAACTTTATACGGAATGGACCCTCAGATTGGATTAACAACTTTTAATTCCAATATGAAT ATTGATGGAACTTCTTCAAATTCAAATAATACCAGTAGTTATTCTTTATATAAACCATAT TCTGAAGCTACATCTCAGGCAATAGATAATTGTATAAGAAAGATGATTAATGATCAATAT TCTCGTGTTAAAGAATTATTAATTTTAAAAAAAGAGCAGGTCCATAAACTTTCTGATTTA CTTTTAAATAAAGAAACAGTTACAAATCAAGATATTAATGAATGTATTGGTCCAATGCCA TCAAAATTATAA
  • Download Fasta

  • Fasta :-

    MKNKLNINKSKKIPYRKNFELNNKENTNFNSQNDRLKFDKFLISIFGISSLGLFSKMKYD EYKNTITLQEFVNLYLSKGYVDRIQVNNERGKAYLKENSKMKQVQDSMGLNTLNFVPIEY SHLISFKKIVNDLLPRAIGITIALLLLRSFSKSISNSASDRLIKSNYSSFSQVKNMNKNI KFSDIAGMKEAKQEIYELVEFLKDPKRFQDLGAKIPKGALLVGPPGTGKTLLAKAVAGEA NVPFFYISGSDFIEIFVGMGASRVRELFSQARKLSPSIVFIDEIDAVGRKRAKGGGFAAS SNDERESTLNQILVEMDGFTENNGVIVLAGTNRSDVLDPALTRPGRFDRIINIERPNLEE RKEIFKIHLKPLKLNEKLNKDELIKYLACLSPGFVGSEIRNLCNEAAIHAARRTSNSGVD LIDFDKASDRIIGGLKKLDGYLSPKEKKIVSLHESGHAIAGWYLKHADPILKVSIVPRTG GALGFAQMVPNELRLLSKEALLDKIAVLLAGRASEELYSESITTGAYDDLQKATMIANSM ITLYGMDPQIGLTTFNSNMNIDGTSSNSNNTSSYSLYKPYSEATSQAIDNCIRKMINDQY SRVKELLILKKEQVHKLSDLLLNKETVTNQDINECIGPMPSKL

  • title: ATP binding site
  • coordinates: P224,P225,G226,T227,G228,K229,T230,L231,D282,N332
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
cgd1_3360443 SDGYLSPKEK0.997unspcgd1_3360443 SDGYLSPKEK0.997unspcgd1_3360443 SDGYLSPKEK0.997unspcgd1_3360415 SARRTSNSGV0.994unspcgd1_3360417 SRTSNSGVDL0.992unsp

cgd1_3360      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India