cgd1_340 | machado-Joseph disease protein like domain/UBX domain containing protein

_IDPredictionOTHERSPmTPCS_Position
cgd1_340OTHER0.9999670.0000200.000014
No Results

  • Fasta :-

    >cgd1_340 MSTKENVIVYWEKQGNDRMCALHCLNSILQGPYFDEAFLSKIAYEIDDMERRLLEKSNST FKTISDNNSQNASYDGFFSIMVLQECLQRHGYSCIPAANPRVQDYILYPSSCCGYIINSS EHWTSIRCVKGKWFNLDSLKAAPIHIDYFEVSKYLQEIMFSGKSVFVVQKIQNETDSHSI PLPDPDPFLRPIKNNGKQRFYLTASEIENLVLEKQKEENRVSQMGDETPNKNFMYSKKPV EYSWPTSGGNVLQSTLNNVDQSNEMTSEEKELEKVLRESAIEFAKSIPLPDEPPADHVNS IQIRVRSKVGSSFVRRFDKTNSCKHLFSWIEYEMALLGNSIHGSPYSFVSQFPYLKVSKF DENSIKISRSDISEIILNSPTFNDIGINENTLLLLNL
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/cgd1_340.fa Sequence name : cgd1_340 Sequence length : 397 VALUES OF COMPUTED PARAMETERS Coef20 : 3.583 CoefTot : -0.001 ChDiff : -9 ZoneTo : 4 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.924 0.741 0.055 0.417 MesoH : -0.678 0.118 -0.367 0.178 MuHd_075 : 23.021 1.971 3.482 4.369 MuHd_095 : 18.154 10.304 4.770 3.775 MuHd_100 : 9.933 8.904 2.521 2.917 MuHd_105 : 3.653 5.904 1.352 1.727 Hmax_075 : -7.000 -3.033 -4.229 1.038 Hmax_095 : -7.200 -0.700 -4.544 1.500 Hmax_100 : -9.100 0.900 -4.632 1.360 Hmax_105 : -5.700 2.400 -3.015 1.960 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9415 0.0585 DFMC : 0.9261 0.0739
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 397 cgd1_340 MSTKENVIVYWEKQGNDRMCALHCLNSILQGPYFDEAFLSKIAYEIDDMERRLLEKSNSTFKTISDNNSQNASYDGFFSI 80 MVLQECLQRHGYSCIPAANPRVQDYILYPSSCCGYIINSSEHWTSIRCVKGKWFNLDSLKAAPIHIDYFEVSKYLQEIMF 160 SGKSVFVVQKIQNETDSHSIPLPDPDPFLRPIKNNGKQRFYLTASEIENLVLEKQKEENRVSQMGDETPNKNFMYSKKPV 240 EYSWPTSGGNVLQSTLNNVDQSNEMTSEEKELEKVLRESAIEFAKSIPLPDEPPADHVNSIQIRVRSKVGSSFVRRFDKT 320 NSCKHLFSWIEYEMALLGNSIHGSPYSFVSQFPYLKVSKFDENSIKISRSDISEIILNSPTFNDIGINENTLLLLNL 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ............................................................................. 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ cgd1_340 4 ---MSTK|EN 0.063 . cgd1_340 13 VIVYWEK|QG 0.064 . cgd1_340 18 EKQGNDR|MC 0.073 . cgd1_340 41 DEAFLSK|IA 0.078 . cgd1_340 51 EIDDMER|RL 0.067 . cgd1_340 52 IDDMERR|LL 0.163 . cgd1_340 56 ERRLLEK|SN 0.092 . cgd1_340 62 KSNSTFK|TI 0.080 . cgd1_340 89 LQECLQR|HG 0.077 . cgd1_340 101 IPAANPR|VQ 0.101 . cgd1_340 127 EHWTSIR|CV 0.118 . cgd1_340 130 TSIRCVK|GK 0.195 . cgd1_340 132 IRCVKGK|WF 0.070 . cgd1_340 140 FNLDSLK|AA 0.069 . cgd1_340 153 DYFEVSK|YL 0.068 . cgd1_340 163 EIMFSGK|SV 0.132 . cgd1_340 170 SVFVVQK|IQ 0.064 . cgd1_340 190 DPDPFLR|PI 0.098 . cgd1_340 193 PFLRPIK|NN 0.149 . cgd1_340 197 PIKNNGK|QR 0.058 . cgd1_340 199 KNNGKQR|FY 0.132 . cgd1_340 214 ENLVLEK|QK 0.065 . cgd1_340 216 LVLEKQK|EE 0.062 . cgd1_340 220 KQKEENR|VS 0.080 . cgd1_340 231 GDETPNK|NF 0.059 . cgd1_340 237 KNFMYSK|KP 0.055 . cgd1_340 238 NFMYSKK|PV 0.219 . cgd1_340 270 EMTSEEK|EL 0.068 . cgd1_340 274 EEKELEK|VL 0.058 . cgd1_340 277 ELEKVLR|ES 0.092 . cgd1_340 285 SAIEFAK|SI 0.071 . cgd1_340 304 VNSIQIR|VR 0.140 . cgd1_340 306 SIQIRVR|SK 0.122 . cgd1_340 308 QIRVRSK|VG 0.066 . cgd1_340 315 VGSSFVR|RF 0.098 . cgd1_340 316 GSSFVRR|FD 0.237 . cgd1_340 319 FVRRFDK|TN 0.136 . cgd1_340 324 DKTNSCK|HL 0.069 . cgd1_340 356 SQFPYLK|VS 0.056 . cgd1_340 359 PYLKVSK|FD 0.068 . cgd1_340 366 FDENSIK|IS 0.062 . cgd1_340 369 NSIKISR|SD 0.104 . ____________________________^_________________

  • Fasta :-

    >cgd1_340 CTTTTCAATTGTGGAAATAGTTGGCTGACTAATTACTATACTTGAATCTGAATTCAAGTC TGCTTAACAAGAGTGGGAAATATAAATTATTCCTCGGGAAAGCAATATCTTTATAGGAAT GTAATAAATCTAATACCAAAATAATTTTAATTTATTAATTGAATATTCAAATATTTATTC TAACTCGAAATAAGTGTTTTTTTTAGTAAAACGATGAGCACAAAAGAGAATGTCATAGTC TATTGGGAGAAACAAGGAAACGACAGGATGTGTGCTCTACACTGTTTAAACTCAATTCTC CAAGGACCATATTTTGATGAAGCTTTTCTCTCTAAGATTGCTTATGAAATAGATGACATG GAAAGACGCTTATTAGAAAAAAGTAACTCAACATTTAAGACAATTTCCGATAATAATTCT CAAAACGCTTCCTACGATGGCTTCTTCTCAATCATGGTTCTTCAGGAATGTTTACAAAGA CATGGGTACTCTTGTATACCAGCAGCAAATCCGAGAGTTCAAGATTATATTTTGTATCCA TCGTCTTGCTGTGGTTATATCATTAACTCATCAGAACACTGGACTTCAATAAGATGCGTC AAAGGAAAGTGGTTTAATTTAGATAGTCTTAAGGCTGCTCCTATTCACATTGATTATTTC GAGGTTTCAAAGTACTTGCAAGAAATTATGTTCTCTGGAAAGAGTGTTTTTGTTGTACAA AAAATTCAGAATGAAACTGATTCACATTCAATTCCTTTACCTGATCCCGACCCATTCCTT AGACCAATAAAGAACAATGGTAAACAAAGATTTTATCTCACTGCTTCAGAAATTGAGAAC CTTGTTTTGGAGAAACAAAAAGAAGAAAATAGAGTATCTCAAATGGGTGACGAAACCCCA AATAAGAATTTTATGTATTCTAAGAAACCGGTTGAATACTCATGGCCAACTTCTGGCGGA AATGTGTTGCAGTCTACATTAAATAATGTTGATCAATCTAATGAAATGACATCCGAAGAA AAAGAACTTGAGAAAGTATTAAGGGAATCTGCAATAGAGTTTGCTAAGAGTATTCCTCTT CCAGATGAACCCCCTGCAGATCATGTCAATTCTATTCAAATTCGTGTCAGGAGCAAGGTT GGATCATCTTTTGTCAGAAGGTTTGACAAGACTAATTCCTGTAAGCATCTATTCTCTTGG ATCGAATATGAAATGGCACTATTGGGGAATTCAATTCATGGTAGCCCATATTCTTTCGTT TCTCAATTTCCCTATCTCAAAGTTTCAAAATTTGATGAAAATTCAATTAAAATTTCGAGA TCTGATATTAGTGAGATAATTCTTAATTCACCAACTTTCAATGACATTGGTATTAATGAG AACACTCTACTACTACTTAATCTTTAATAAAATTACTAATTTACGATATATATTGCTAAT TCAACGCACATTAGTATCATTACTTTATACTAAATAAGGTTAG
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  • Fasta :-

    MSTKENVIVYWEKQGNDRMCALHCLNSILQGPYFDEAFLSKIAYEIDDMERRLLEKSNST FKTISDNNSQNASYDGFFSIMVLQECLQRHGYSCIPAANPRVQDYILYPSSCCGYIINSS EHWTSIRCVKGKWFNLDSLKAAPIHIDYFEVSKYLQEIMFSGKSVFVVQKIQNETDSHSI PLPDPDPFLRPIKNNGKQRFYLTASEIENLVLEKQKEENRVSQMGDETPNKNFMYSKKPV EYSWPTSGGNVLQSTLNNVDQSNEMTSEEKELEKVLRESAIEFAKSIPLPDEPPADHVNS IQIRVRSKVGSSFVRRFDKTNSCKHLFSWIEYEMALLGNSIHGSPYSFVSQFPYLKVSKF DENSIKISRSDISEIILNSPTFNDIGINENTLLLLNL

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
cgd1_340267 SNEMTSEEKE0.99unspcgd1_340279 SVLRESAIEF0.995unsp

cgd1_340      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India