cgd2_1350 | 26S proteasome subunit P45/AAA+ ATPase core domain containing protein

_IDPredictionOTHERSPmTPCS_Position
cgd2_1350OTHER0.9999920.0000030.000006
No Results

  • Fasta :-

    >cgd2_1350 MSSEEGTDNWSAEEAVESVKTLSVSELQSRIRLLDGEIRLMKSESNRLKHELNQMNERIR SNTEKIKLNKQLPYLVANIVESLDFSDEQENEGEGMEFDGDKNDKCMVIKTSSRQTVFLP VIGLVPENELKPGDLVGVNKDSYLILDKLPPEYDSRVKAMEVDERPMEEYSDIGGLDKQI QELVEAIVLPMTHKERFEKIGIKPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQ LVQMFIGDGAKMVRDAFEIAREKAPSIIFIDELDAIGMKRFDSEHSGDREVQRTMLELLN QLDGFSSDDRVKVIAATNRPDTLDPALLRSGRLDRKVELPHPNEEARSRILQIHSRKMNV DLNDVNFQELSRSTDDFNGAQLKAVCVEAGMTALRRGATILCHEDYVEGIAAVLAKKKSP LSYFS
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/cgd2_1350.fa Sequence name : cgd2_1350 Sequence length : 425 VALUES OF COMPUTED PARAMETERS Coef20 : 3.327 CoefTot : 0.224 ChDiff : -14 ZoneTo : 3 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.829 1.012 -0.018 0.465 MesoH : -0.675 0.312 -0.395 0.188 MuHd_075 : 40.370 20.299 10.490 5.995 MuHd_095 : 17.970 10.005 5.546 1.203 MuHd_100 : 4.178 8.972 2.010 1.197 MuHd_105 : 10.083 8.995 3.548 1.977 Hmax_075 : 2.450 1.488 -1.294 1.902 Hmax_095 : -0.612 1.900 -2.914 1.160 Hmax_100 : -9.600 -0.800 -4.313 0.600 Hmax_105 : -6.300 0.000 -3.843 0.852 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8720 0.1280 DFMC : 0.8077 0.1923
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 425 cgd2_1350 MSSEEGTDNWSAEEAVESVKTLSVSELQSRIRLLDGEIRLMKSESNRLKHELNQMNERIRSNTEKIKLNKQLPYLVANIV 80 ESLDFSDEQENEGEGMEFDGDKNDKCMVIKTSSRQTVFLPVIGLVPENELKPGDLVGVNKDSYLILDKLPPEYDSRVKAM 160 EVDERPMEEYSDIGGLDKQIQELVEAIVLPMTHKERFEKIGIKPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQ 240 LVQMFIGDGAKMVRDAFEIAREKAPSIIFIDELDAIGMKRFDSEHSGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRP 320 DTLDPALLRSGRLDRKVELPHPNEEARSRILQIHSRKMNVDLNDVNFQELSRSTDDFNGAQLKAVCVEAGMTALRRGATI 400 LCHEDYVEGIAAVLAKKKSPLSYFS 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ......................... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ cgd2_1350 20 EAVESVK|TL 0.071 . cgd2_1350 30 VSELQSR|IR 0.066 . cgd2_1350 32 ELQSRIR|LL 0.098 . cgd2_1350 39 LLDGEIR|LM 0.066 . cgd2_1350 42 GEIRLMK|SE 0.229 . cgd2_1350 47 MKSESNR|LK 0.117 . cgd2_1350 49 SESNRLK|HE 0.069 . cgd2_1350 58 LNQMNER|IR 0.091 . cgd2_1350 60 QMNERIR|SN 0.138 . cgd2_1350 65 IRSNTEK|IK 0.074 . cgd2_1350 67 SNTEKIK|LN 0.063 . cgd2_1350 70 EKIKLNK|QL 0.061 . cgd2_1350 102 MEFDGDK|ND 0.056 . cgd2_1350 105 DGDKNDK|CM 0.058 . cgd2_1350 110 DKCMVIK|TS 0.072 . cgd2_1350 114 VIKTSSR|QT 0.073 . cgd2_1350 131 VPENELK|PG 0.063 . cgd2_1350 140 DLVGVNK|DS 0.073 . cgd2_1350 148 SYLILDK|LP 0.051 . cgd2_1350 156 PPEYDSR|VK 0.073 . cgd2_1350 158 EYDSRVK|AM 0.062 . cgd2_1350 165 AMEVDER|PM 0.083 . cgd2_1350 178 DIGGLDK|QI 0.062 . cgd2_1350 194 VLPMTHK|ER 0.060 . cgd2_1350 196 PMTHKER|FE 0.097 . cgd2_1350 199 HKERFEK|IG 0.126 . cgd2_1350 203 FEKIGIK|PP 0.063 . cgd2_1350 206 IGIKPPK|GV 0.101 . cgd2_1350 218 GPPGTGK|TL 0.059 . cgd2_1350 223 GKTLLAR|AC 0.099 . cgd2_1350 230 ACAAQTK|AT 0.076 . cgd2_1350 235 TKATFLK|LA 0.128 . cgd2_1350 251 FIGDGAK|MV 0.085 . cgd2_1350 254 DGAKMVR|DA 0.137 . cgd2_1350 261 DAFEIAR|EK 0.084 . cgd2_1350 263 FEIAREK|AP 0.062 . cgd2_1350 279 LDAIGMK|RF 0.059 . cgd2_1350 280 DAIGMKR|FD 0.173 . cgd2_1350 289 SEHSGDR|EV 0.102 . cgd2_1350 293 GDREVQR|TM 0.108 . cgd2_1350 310 GFSSDDR|VK 0.076 . cgd2_1350 312 SSDDRVK|VI 0.060 . cgd2_1350 319 VIAATNR|PD 0.077 . cgd2_1350 329 LDPALLR|SG 0.085 . cgd2_1350 332 ALLRSGR|LD 0.231 . cgd2_1350 335 RSGRLDR|KV 0.354 . cgd2_1350 336 SGRLDRK|VE 0.068 . cgd2_1350 347 HPNEEAR|SR 0.194 . cgd2_1350 349 NEEARSR|IL 0.087 . cgd2_1350 356 ILQIHSR|KM 0.093 . cgd2_1350 357 LQIHSRK|MN 0.083 . cgd2_1350 372 NFQELSR|ST 0.122 . cgd2_1350 383 FNGAQLK|AV 0.087 . cgd2_1350 395 AGMTALR|RG 0.100 . cgd2_1350 396 GMTALRR|GA 0.160 . cgd2_1350 416 IAAVLAK|KK 0.071 . cgd2_1350 417 AAVLAKK|KS 0.071 . cgd2_1350 418 AVLAKKK|SP 0.108 . ____________________________^_________________

  • Fasta :-

    >cgd2_1350 ACAGATTTAGAGCGGGTGTTAAACAAAATCAAATTGCTGTGGGTGGGGGGAAATATTATT GCAAGAGTAATTTTCCAAATAGTTGAGTTAATTTACGTTGTAATACCAATGTCATCTGAG GAAGGCACCGATAATTGGTCTGCAGAGGAGGCTGTAGAGAGCGTAAAGACTCTGAGTGTT AGTGAGCTTCAGTCTAGGATTCGCCTTTTAGATGGTGAAATTCGACTTATGAAAAGCGAA AGTAATCGTCTTAAGCATGAATTAAACCAGATGAATGAAAGAATCAGAAGTAATACTGAA AAAATAAAACTCAACAAACAGCTTCCATATCTGGTTGCCAACATTGTCGAATCGCTGGAT TTTTCAGATGAACAGGAAAATGAGGGTGAAGGTATGGAATTCGATGGAGACAAAAACGAT AAATGCATGGTAATAAAAACATCATCAAGGCAGACTGTCTTTCTCCCTGTCATTGGATTG GTTCCAGAGAATGAATTAAAGCCTGGCGATCTTGTTGGAGTGAATAAGGATAGTTATTTA ATTCTTGATAAATTGCCACCGGAGTATGACTCTAGAGTTAAGGCTATGGAAGTTGATGAA AGACCAATGGAAGAGTATTCAGATATTGGAGGATTAGATAAGCAGATCCAGGAATTGGTG GAGGCAATCGTCCTTCCGATGACCCACAAAGAAAGGTTTGAGAAAATTGGTATAAAACCT CCAAAGGGTGTACTAATGTATGGACCTCCAGGCACAGGAAAAACTCTTTTGGCAAGGGCA TGTGCAGCACAAACTAAAGCGACATTTTTGAAATTAGCAGGCCCACAACTTGTACAAATG TTTATTGGTGATGGTGCAAAGATGGTTAGGGATGCATTTGAAATTGCACGTGAAAAAGCT CCTTCAATAATATTTATTGACGAGCTTGACGCTATAGGTATGAAAAGGTTTGATAGTGAG CATAGTGGAGATAGAGAGGTACAAAGGACTATGCTTGAGTTACTTAATCAATTAGATGGA TTTAGCTCAGACGACAGAGTTAAAGTTATTGCTGCAACGAATAGGCCGGATACTCTCGAT CCAGCCCTTTTAAGATCAGGTAGGCTTGACCGTAAGGTCGAGTTACCGCATCCAAACGAA GAAGCAAGGTCCAGAATACTTCAAATACATAGCAGAAAAATGAATGTTGATTTAAATGAC GTGAATTTCCAAGAGCTATCAAGATCAACAGATGATTTTAACGGTGCTCAGCTTAAGGCA GTTTGTGTTGAAGCGGGGATGACAGCACTCAGAAGGGGAGCAACGATACTTTGCCATGAA GATTATGTCGAAGGGATTGCAGCAGTACTAGCAAAGAAGAAATCCCCACTTAGCTATTTT TCATAA
  • Download Fasta

  • Fasta :-

    MSSEEGTDNWSAEEAVESVKTLSVSELQSRIRLLDGEIRLMKSESNRLKHELNQMNERIR SNTEKIKLNKQLPYLVANIVESLDFSDEQENEGEGMEFDGDKNDKCMVIKTSSRQTVFLP VIGLVPENELKPGDLVGVNKDSYLILDKLPPEYDSRVKAMEVDERPMEEYSDIGGLDKQI QELVEAIVLPMTHKERFEKIGIKPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQ LVQMFIGDGAKMVRDAFEIAREKAPSIIFIDELDAIGMKRFDSEHSGDREVQRTMLELLN QLDGFSSDDRVKVIAATNRPDTLDPALLRSGRLDRKVELPHPNEEARSRILQIHSRKMNV DLNDVNFQELSRSTDDFNGAQLKAVCVEAGMTALRRGATILCHEDYVEGIAAVLAKKKSP LSYFS

  • title: ATP binding site
  • coordinates: P213,P214,G215,T216,G217,K218,T219,L220,D271,N318
IDSitePositionGscoreIscoreIDSitePositionGscoreIscoreIDSitePositionGscoreIscore
cgd2_1350T70.5150.036cgd2_1350S20.5060.063cgd2_1350S30.5040.052
IDSitePositionGscoreIscoreIDSitePositionGscoreIscoreIDSitePositionGscoreIscore
cgd2_1350T70.5150.036cgd2_1350S20.5060.063cgd2_1350S30.5040.052
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
cgd2_135011 STDNWSAEEA0.992unspcgd2_1350283 SKRFDSEHSG0.994unsp

cgd2_1350      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India