cgd2_1440 | Proteasome subunit alpha type

UniProt_ID: Q5CTV2

Computed_GO_Component_IDs: GO:0005839 GO:0019773
Computed_GO_Components: proteasome core complex proteasome core complex, alpha-subunit complex
Computed_GO_Function_IDs: GO:0004175 GO:0004298
Computed_GO_Functions: endopeptidase activity threonine-type endopeptidase activity
Computed_GO_Process_IDs: GO:0051603 GO:0006511
Computed_GO_Processes: proteolysis involved in cellular protein catabolic process ubiquitin-dependent protein catabolic process
Curated_GO_Component_IDs:
Curated_GO_Components:
Curated_GO_Function_IDs:
Curated_GO_Functions:
Curated_GO_Processes:

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	cgd2_1440	OTHER	0.999938	0.000034	0.000028

No Results

Fasta :-
>cgd2_1440 MSLYDRAITVFSPDGHLLQVEYAMEAVRKGYGAIGVRGAECVVLAVERKAVAKLQDPRSA KKLLLVDDNTCLAFAGLHADARVLVNKIRLECQNFRLNIEDAPPVDYIARFTAQQQQKYT HRGGVRPFGVSTLIAGVHNDGSPGLYQTDPSGIALEWKAQAVGQNSKTVQEFLEKNYKHD MAKEETINLAISALLEVVESGSRNMEIVVVDKKGCNFLSDEETDMLVSAIESKIAAENEN KTRQ
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/cgd2_1440.fa Sequence name : cgd2_1440 Sequence length : 244 VALUES OF COMPUTED PARAMETERS Coef20 : 3.813 CoefTot : 0.077 ChDiff : -4 ZoneTo : 4 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.347 1.300 0.126 0.470 MesoH : -1.126 0.305 -0.488 0.110 MuHd_075 : 23.709 13.944 5.983 4.692 MuHd_095 : 18.840 13.925 5.121 4.711 MuHd_100 : 18.894 17.830 5.659 5.973 MuHd_105 : 17.042 17.999 5.113 6.318 Hmax_075 : 13.500 15.300 2.537 5.260 Hmax_095 : 14.300 15.000 2.685 6.160 Hmax_100 : 14.900 16.700 2.198 5.700 Hmax_105 : 4.987 11.600 -0.028 4.480 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8933 0.1067 DFMC : 0.9438 0.0562

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 244 cgd2_1440 MSLYDRAITVFSPDGHLLQVEYAMEAVRKGYGAIGVRGAECVVLAVERKAVAKLQDPRSAKKLLLVDDNTCLAFAGLHAD 80 ARVLVNKIRLECQNFRLNIEDAPPVDYIARFTAQQQQKYTHRGGVRPFGVSTLIAGVHNDGSPGLYQTDPSGIALEWKAQ 160 AVGQNSKTVQEFLEKNYKHDMAKEETINLAISALLEVVESGSRNMEIVVVDKKGCNFLSDEETDMLVSAIESKIAAENEN 240 KTRQ 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ cgd2_1440 6 -MSLYDR|AI 0.093 . cgd2_1440 28 YAMEAVR|KG 0.081 . cgd2_1440 29 AMEAVRK|GY 0.140 . cgd2_1440 37 YGAIGVR|GA 0.113 . cgd2_1440 48 VVLAVER|KA 0.090 . cgd2_1440 49 VLAVERK|AV 0.133 . cgd2_1440 53 ERKAVAK|LQ 0.069 . cgd2_1440 58 AKLQDPR|SA 0.138 . cgd2_1440 61 QDPRSAK|KL 0.115 . cgd2_1440 62 DPRSAKK|LL 0.084 . cgd2_1440 82 GLHADAR|VL 0.095 . cgd2_1440 87 ARVLVNK|IR 0.062 . cgd2_1440 89 VLVNKIR|LE 0.088 . cgd2_1440 96 LECQNFR|LN 0.073 . cgd2_1440 110 PVDYIAR|FT 0.117 . cgd2_1440 118 TAQQQQK|YT 0.100 . cgd2_1440 122 QQKYTHR|GG 0.083 . cgd2_1440 126 THRGGVR|PF 0.104 . cgd2_1440 158 GIALEWK|AQ 0.074 . cgd2_1440 167 AVGQNSK|TV 0.067 . cgd2_1440 175 VQEFLEK|NY 0.056 . cgd2_1440 178 FLEKNYK|HD 0.071 . cgd2_1440 183 YKHDMAK|EE 0.073 . cgd2_1440 203 VVESGSR|NM 0.069 . cgd2_1440 212 EIVVVDK|KG 0.060 . cgd2_1440 213 IVVVDKK|GC 0.076 . cgd2_1440 233 VSAIESK|IA 0.072 . cgd2_1440 241 AAENENK|TR 0.056 . cgd2_1440 243 ENENKTR|Q- 0.106 . ____________________________^_________________

Fasta :-
>cgd2_1440 ATTATTCTTTTAAAAAGAATTGATAATTTTAAGATAATGTCACTTTACGATAGAGCAATA ACTGTATTTTCTCCGGATGGTCACCTACTTCAAGTAGAATATGCAATGGAGGCAGTTCGA AAGGGTTATGGTGCAATAGGAGTACGTGGGGCAGAATGCGTAGTACTTGCAGTTGAGAGA AAGGCTGTTGCAAAACTTCAAGATCCTAGGAGCGCAAAAAAATTATTGTTAGTTGATGAT AATACTTGCCTTGCATTTGCTGGGCTCCATGCTGACGCAAGAGTTCTTGTAAATAAAATA AGACTAGAATGCCAAAACTTTAGGCTGAATATAGAAGACGCACCACCGGTAGACTATATA GCAAGATTTACTGCACAACAACAACAGAAATATACTCATAGGGGTGGTGTTAGGCCTTTT GGAGTATCTACTTTGATTGCAGGTGTTCATAATGATGGAAGCCCAGGTTTGTATCAAACA GACCCATCTGGAATTGCGCTTGAATGGAAGGCACAAGCTGTGGGACAAAATTCAAAGACA GTGCAGGAGTTTCTTGAAAAAAACTATAAGCACGATATGGCAAAAGAGGAAACTATTAAT TTAGCTATCAGCGCACTACTTGAAGTTGTTGAATCGGGTTCAAGAAATATGGAAATTGTC GTAGTCGATAAAAAAGGATGTAATTTCCTCTCTGATGAAGAAACAGATATGCTTGTTTCG GCCATCGAATCAAAAATTGCTGCTGAAAACGAGAATAAAACTAGACAATAG
Download Fasta

Fasta :-

MSLYDRAITVFSPDGHLLQVEYAMEAVRKGYGAIGVRGAECVVLAVERKAVAKLQDPRSA KKLLLVDDNTCLAFAGLHADARVLVNKIRLECQNFRLNIEDAPPVDYIARFTAQQQQKYT HRGGVRPFGVSTLIAGVHNDGSPGLYQTDPSGIALEWKAQAVGQNSKTVQEFLEKNYKHD MAKEETINLAISALLEVVESGSRNMEIVVVDKKGCNFLSDEETDMLVSAIESKIAAENEN KTRQ

Proteasome subunits

title: active site
coordinates: Y31,E47,K49,K62,Q164

	ID	Site	Position	Gscore	Iscore
	cgd2_1440	T	242	0.533	0.035

	ID	Site	Position	Gscore	Iscore
	cgd2_1440	T	242	0.533	0.035

	ID	Site	Peptide	Score	Method
	cgd2_1440	219 S	CNFLSDEET	0.99	unsp

cgd2_1440 | Proteasome subunit alpha type

ID's

UniProt_ID: Q5CTV2

GEO Functions

Computed_GO_Component_IDs: GO:0005839 GO:0019773

Computed_GO_Components: proteasome core complex proteasome core complex, alpha-subunit complex

Computed_GO_Function_IDs: GO:0004175 GO:0004298

Computed_GO_Functions: endopeptidase activity threonine-type endopeptidase activity

Computed_GO_Process_IDs: GO:0051603 GO:0006511

Computed_GO_Processes: proteolysis involved in cellular protein catabolic process ubiquitin-dependent protein catabolic process

Curated_GO_Component_IDs:

Curated_GO_Components:

Curated_GO_Function_IDs:

Curated_GO_Functions:

Curated_GO_Processes:

Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

Proteasome subunits

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

cgd2_1440

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India