cgd2_2050 | Proteasome subunit alpha type

UniProt_ID: Q5CTQ7

Computed_GO_Component_IDs: GO:0005839 GO:0019773
Computed_GO_Components: proteasome core complex proteasome core complex, alpha-subunit complex
Computed_GO_Function_IDs: GO:0004175 GO:0004298
Computed_GO_Functions: endopeptidase activity threonine-type endopeptidase activity
Computed_GO_Process_IDs: GO:0051603 GO:0006511
Computed_GO_Processes: proteolysis involved in cellular protein catabolic process ubiquitin-dependent protein catabolic process
Curated_GO_Component_IDs:
Curated_GO_Components:
Curated_GO_Function_IDs:
Curated_GO_Functions:
Curated_GO_Processes:

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	cgd2_2050	OTHER	0.999883	0.000069	0.000048

No Results

Fasta :-
>cgd2_2050 MYRNQYDTDVVTWSPQGRVFQIEYAMEAVKQGTAVVGARNDEIVVLACIKRSTSRLAGYQ KKLYKIDNHIGVAVSGITADAKVICNYLRSECLNYSFTYDSPIPLNTLVNRLVLKSQVNT QEYGRRPFGVGLLLAGFDESGPHLFETCPSGNCFEYYSIAIGSRSQASKTYLEKHFKEFA NCSKDQLILHTLRALRSSLSSEQEMNQENVDVAILGRNDIYNELLEEEKIKYLQIINQEQ PPTIEQINESQETSSMQID
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/cgd2_2050.fa Sequence name : cgd2_2050 Sequence length : 259 VALUES OF COMPUTED PARAMETERS Coef20 : 3.722 CoefTot : -0.468 ChDiff : -6 ZoneTo : 6 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.400 1.259 0.030 0.491 MesoH : -0.745 0.218 -0.371 0.149 MuHd_075 : 28.014 15.949 6.755 6.427 MuHd_095 : 19.210 2.047 1.125 3.583 MuHd_100 : 15.557 2.752 0.747 2.872 MuHd_105 : 5.702 6.772 1.126 0.733 Hmax_075 : 4.200 4.550 -1.252 2.765 Hmax_095 : -0.700 -3.900 -3.562 1.575 Hmax_100 : -0.700 -3.900 -3.562 1.160 Hmax_105 : -8.400 -4.300 -4.984 -0.548 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9124 0.0876 DFMC : 0.9211 0.0789

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 259 cgd2_2050 MYRNQYDTDVVTWSPQGRVFQIEYAMEAVKQGTAVVGARNDEIVVLACIKRSTSRLAGYQKKLYKIDNHIGVAVSGITAD 80 AKVICNYLRSECLNYSFTYDSPIPLNTLVNRLVLKSQVNTQEYGRRPFGVGLLLAGFDESGPHLFETCPSGNCFEYYSIA 160 IGSRSQASKTYLEKHFKEFANCSKDQLILHTLRALRSSLSSEQEMNQENVDVAILGRNDIYNELLEEEKIKYLQIINQEQ 240 PPTIEQINESQETSSMQID 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ cgd2_2050 3 ----MYR|NQ 0.079 . cgd2_2050 18 TWSPQGR|VF 0.130 . cgd2_2050 30 YAMEAVK|QG 0.065 . cgd2_2050 39 TAVVGAR|ND 0.116 . cgd2_2050 50 VVLACIK|RS 0.054 . cgd2_2050 51 VLACIKR|ST 0.301 . cgd2_2050 55 IKRSTSR|LA 0.130 . cgd2_2050 61 RLAGYQK|KL 0.071 . cgd2_2050 62 LAGYQKK|LY 0.096 . cgd2_2050 65 YQKKLYK|ID 0.068 . cgd2_2050 82 GITADAK|VI 0.071 . cgd2_2050 89 VICNYLR|SE 0.089 . cgd2_2050 111 LNTLVNR|LV 0.120 . cgd2_2050 115 VNRLVLK|SQ 0.071 . cgd2_2050 125 NTQEYGR|RP 0.075 . cgd2_2050 126 TQEYGRR|PF 0.172 . cgd2_2050 164 SIAIGSR|SQ 0.102 . cgd2_2050 169 SRSQASK|TY 0.082 . cgd2_2050 174 SKTYLEK|HF 0.061 . cgd2_2050 177 YLEKHFK|EF 0.061 . cgd2_2050 184 EFANCSK|DQ 0.060 . cgd2_2050 193 LILHTLR|AL 0.088 . cgd2_2050 196 HTLRALR|SS 0.297 . cgd2_2050 217 DVAILGR|ND 0.078 . cgd2_2050 229 ELLEEEK|IK 0.055 . cgd2_2050 231 LEEEKIK|YL 0.078 . ____________________________^_________________

Fasta :-
>cgd2_2050 TACTTTTTCTGTTCACTCTTACAACAATTTAGTAGTTGTGAATACATCCTTTTTATTACT TTAGTTTTTTTAATAAGTATTTCAATAATGTATAGAAACCAATATGATACGGACGTTGTT ACTTGGTCTCCACAAGGAAGAGTTTTCCAGATTGAATACGCAATGGAAGCAGTTAAACAA GGCACTGCAGTAGTTGGAGCAAGAAACGATGAGATAGTTGTTCTTGCTTGCATAAAAAGA AGTACAAGCAGGCTCGCTGGGTACCAAAAGAAACTATACAAAATTGACAACCATATTGGC GTAGCAGTTTCAGGGATTACTGCAGACGCTAAAGTAATTTGTAACTACCTTAGATCAGAA TGTCTAAACTACTCATTCACATATGATTCACCAATACCATTGAACACTTTGGTTAACAGG CTTGTATTGAAATCCCAGGTAAATACACAAGAATACGGCAGAAGGCCATTTGGCGTAGGA TTGCTCTTGGCAGGATTTGATGAAAGCGGCCCGCATTTATTTGAAACATGCCCTTCCGGG AATTGCTTTGAATATTACTCGATTGCAATAGGGTCAAGATCTCAAGCTAGCAAAACTTAT TTGGAAAAACATTTTAAAGAATTTGCTAATTGTAGCAAGGATCAATTGATTTTACATACT TTAAGAGCATTAAGATCAAGCTTGTCATCTGAACAAGAAATGAATCAAGAAAATGTGGAT GTGGCAATTTTAGGAAGAAATGACATTTATAATGAATTATTAGAAGAAGAAAAAATAAAA TATCTTCAAATTATTAACCAAGAGCAACCGCCAACTATAGAACAAATTAATGAATCTCAA GAAACTTCCTCTATGCAAATAGACTAA
Download Fasta

Fasta :-

MYRNQYDTDVVTWSPQGRVFQIEYAMEAVKQGTAVVGARNDEIVVLACIKRSTSRLAGYQ KKLYKIDNHIGVAVSGITADAKVICNYLRSECLNYSFTYDSPIPLNTLVNRLVLKSQVNT QEYGRRPFGVGLLLAGFDESGPHLFETCPSGNCFEYYSIAIGSRSQASKTYLEKHFKEFA NCSKDQLILHTLRALRSSLSSEQEMNQENVDVAILGRNDIYNELLEEEKIKYLQIINQEQ PPTIEQINESQETSSMQID

Proteasome subunits

title: active site
coordinates: T33,I49,R51,K62,S163

	ID	Site	Position	Gscore	Iscore
	cgd2_2050	T	253	0.565	0.067

	ID	Site	Position	Gscore	Iscore
	cgd2_2050	T	253	0.565	0.067

	ID	Site	Peptide	Score	Method
	cgd2_2050	54 S	KRSTSRLAG	0.991	unsp

cgd2_2050 | Proteasome subunit alpha type

ID's

UniProt_ID: Q5CTQ7

GEO Functions

Computed_GO_Component_IDs: GO:0005839 GO:0019773

Computed_GO_Components: proteasome core complex proteasome core complex, alpha-subunit complex

Computed_GO_Function_IDs: GO:0004175 GO:0004298

Computed_GO_Functions: endopeptidase activity threonine-type endopeptidase activity

Computed_GO_Process_IDs: GO:0051603 GO:0006511

Computed_GO_Processes: proteolysis involved in cellular protein catabolic process ubiquitin-dependent protein catabolic process

Curated_GO_Component_IDs:

Curated_GO_Components:

Curated_GO_Function_IDs:

Curated_GO_Functions:

Curated_GO_Processes:

Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

Proteasome subunits

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

cgd2_2050

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India