cgd2_360 | Eukaryotic translation initiation factor 3 subunit B

_IDPredictionOTHERSPmTPCS_Position
cgd2_360OTHER0.9996000.0002210.000179
No Results

  • Fasta :-

    >cgd2_360 MFKVTREELGEDIDLLEYLSDSTYDGEETEEYISKRCNTIEEPLTLSDSFSKSFVIFGLP CIGSDKYERFLKALRTIINQTLKMMRVEYDENFLLDVPQDVDGSTKGVAILTFSNSFQAE TVCQALSKAPFDKQTKFNTVMFDDVKRIIEQDESAPGHFETLYPPPTLFSRDDVRNWLMG PRCREQFVIRYQSATEIYSFDSIQRIPELIYDGERAKGGKRVWTDFSVQWSPMGSYLVTF HRQGVALWGGDDWDKKIRFEHKDVKFIDFSPNEEYLLTWDGSSPDSRFDKAVKVWHVLSG RLLRCFSTPTMTLNNNGTDSGLHFLWSPTGNYLAHCSDKGELFVYESSTMTLVEDPATGN KNPLKYPLQFFDWSPEEDNLSIWCPERGDTPGRLTLLSIKNRKELAIKNVFNVREASVHW QPKGQYMCLKALVSRKAGKKAKKEYTQLEIFRVKEKNVPVDTVHIEGVTVKCLSWESSNR FAIVVVDDVTRSQTLRFYQVNATQTDFVCSYYLTSPVDTIKWSPLGSYFVLGGSGGNLTF CQLTNENKFDILQKDEHFMCNWIQWDPTGRYVTTAFQSKLAEGAYKYSTETGFIVWSFQG RQLYNSPLETFYQFIWRPHPPSLLSQEKFDEIPRKLKDYSKKFDAEDEAVRSEKRNIVLQ KRKVNEDEFNAILQKIQEWKVQQPLYKEWLAAKEVLLNSLQWEEQEEVIEIELETIQEVI STEV
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/cgd2_360.fa Sequence name : cgd2_360 Sequence length : 724 VALUES OF COMPUTED PARAMETERS Coef20 : 3.415 CoefTot : 0.022 ChDiff : -20 ZoneTo : 6 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.312 1.124 0.197 0.504 MesoH : -0.330 0.213 -0.280 0.184 MuHd_075 : 32.313 14.125 9.400 4.051 MuHd_095 : 31.496 19.927 8.114 5.579 MuHd_100 : 33.544 20.422 8.615 5.601 MuHd_105 : 26.749 15.880 7.051 4.147 Hmax_075 : 2.333 8.400 -0.302 3.395 Hmax_095 : -0.350 9.188 -1.535 3.281 Hmax_100 : 7.800 12.600 0.394 4.490 Hmax_105 : 4.783 11.667 -0.105 4.142 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9263 0.0737 DFMC : 0.8778 0.1222
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 724 cgd2_360 MFKVTREELGEDIDLLEYLSDSTYDGEETEEYISKRCNTIEEPLTLSDSFSKSFVIFGLPCIGSDKYERFLKALRTIINQ 80 TLKMMRVEYDENFLLDVPQDVDGSTKGVAILTFSNSFQAETVCQALSKAPFDKQTKFNTVMFDDVKRIIEQDESAPGHFE 160 TLYPPPTLFSRDDVRNWLMGPRCREQFVIRYQSATEIYSFDSIQRIPELIYDGERAKGGKRVWTDFSVQWSPMGSYLVTF 240 HRQGVALWGGDDWDKKIRFEHKDVKFIDFSPNEEYLLTWDGSSPDSRFDKAVKVWHVLSGRLLRCFSTPTMTLNNNGTDS 320 GLHFLWSPTGNYLAHCSDKGELFVYESSTMTLVEDPATGNKNPLKYPLQFFDWSPEEDNLSIWCPERGDTPGRLTLLSIK 400 NRKELAIKNVFNVREASVHWQPKGQYMCLKALVSRKAGKKAKKEYTQLEIFRVKEKNVPVDTVHIEGVTVKCLSWESSNR 480 FAIVVVDDVTRSQTLRFYQVNATQTDFVCSYYLTSPVDTIKWSPLGSYFVLGGSGGNLTFCQLTNENKFDILQKDEHFMC 560 NWIQWDPTGRYVTTAFQSKLAEGAYKYSTETGFIVWSFQGRQLYNSPLETFYQFIWRPHPPSLLSQEKFDEIPRKLKDYS 640 KKFDAEDEAVRSEKRNIVLQKRKVNEDEFNAILQKIQEWKVQQPLYKEWLAAKEVLLNSLQWEEQEEVIEIELETIQEVI 720 STEV 800 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ................................................................................ 720 .... 800 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ cgd2_360 3 ----MFK|VT 0.067 . cgd2_360 6 -MFKVTR|EE 0.074 . cgd2_360 35 TEEYISK|RC 0.070 . cgd2_360 36 EEYISKR|CN 0.235 . cgd2_360 52 LSDSFSK|SF 0.068 . cgd2_360 66 PCIGSDK|YE 0.056 . cgd2_360 69 GSDKYER|FL 0.105 . cgd2_360 72 KYERFLK|AL 0.167 . cgd2_360 75 RFLKALR|TI 0.073 . cgd2_360 83 IINQTLK|MM 0.063 . cgd2_360 86 QTLKMMR|VE 0.075 . cgd2_360 106 DVDGSTK|GV 0.074 . cgd2_360 128 VCQALSK|AP 0.072 . cgd2_360 133 SKAPFDK|QT 0.081 . cgd2_360 136 PFDKQTK|FN 0.066 . cgd2_360 146 VMFDDVK|RI 0.060 . cgd2_360 147 MFDDVKR|II 0.245 . cgd2_360 171 PPTLFSR|DD 0.087 . cgd2_360 175 FSRDDVR|NW 0.089 . cgd2_360 182 NWLMGPR|CR 0.075 . cgd2_360 184 LMGPRCR|EQ 0.095 . cgd2_360 190 REQFVIR|YQ 0.131 . cgd2_360 205 SFDSIQR|IP 0.080 . cgd2_360 215 LIYDGER|AK 0.095 . cgd2_360 217 YDGERAK|GG 0.067 . cgd2_360 220 ERAKGGK|RV 0.085 . cgd2_360 221 RAKGGKR|VW 0.133 . cgd2_360 242 YLVTFHR|QG 0.077 . cgd2_360 255 GGDDWDK|KI 0.060 . cgd2_360 256 GDDWDKK|IR 0.085 . cgd2_360 258 DWDKKIR|FE 0.099 . cgd2_360 262 KIRFEHK|DV 0.107 . cgd2_360 265 FEHKDVK|FI 0.079 . cgd2_360 287 GSSPDSR|FD 0.145 . cgd2_360 290 PDSRFDK|AV 0.260 . cgd2_360 293 RFDKAVK|VW 0.056 . cgd2_360 301 WHVLSGR|LL 0.070 . cgd2_360 304 LSGRLLR|CF 0.322 . cgd2_360 339 LAHCSDK|GE 0.067 . cgd2_360 361 DPATGNK|NP 0.056 . cgd2_360 365 GNKNPLK|YP 0.078 . cgd2_360 387 SIWCPER|GD 0.122 . cgd2_360 393 RGDTPGR|LT 0.079 . cgd2_360 400 LTLLSIK|NR 0.050 . cgd2_360 402 LLSIKNR|KE 0.101 . cgd2_360 403 LSIKNRK|EL 0.082 . cgd2_360 408 RKELAIK|NV 0.080 . cgd2_360 414 KNVFNVR|EA 0.099 . cgd2_360 423 SVHWQPK|GQ 0.086 . cgd2_360 430 GQYMCLK|AL 0.065 . cgd2_360 435 LKALVSR|KA 0.159 . cgd2_360 436 KALVSRK|AG 0.083 . cgd2_360 439 VSRKAGK|KA 0.086 . cgd2_360 440 SRKAGKK|AK 0.102 . cgd2_360 442 KAGKKAK|KE 0.088 . cgd2_360 443 AGKKAKK|EY 0.113 . cgd2_360 452 TQLEIFR|VK 0.092 . cgd2_360 454 LEIFRVK|EK 0.063 . cgd2_360 456 IFRVKEK|NV 0.076 . cgd2_360 471 IEGVTVK|CL 0.070 . cgd2_360 480 SWESSNR|FA 0.137 . cgd2_360 491 VVDDVTR|SQ 0.090 . cgd2_360 496 TRSQTLR|FY 0.143 . cgd2_360 521 SPVDTIK|WS 0.061 . cgd2_360 548 QLTNENK|FD 0.060 . cgd2_360 554 KFDILQK|DE 0.065 . cgd2_360 570 QWDPTGR|YV 0.160 . cgd2_360 579 TTAFQSK|LA 0.081 . cgd2_360 586 LAEGAYK|YS 0.074 . cgd2_360 601 VWSFQGR|QL 0.115 . cgd2_360 617 FYQFIWR|PH 0.089 . cgd2_360 628 SLLSQEK|FD 0.067 . cgd2_360 634 KFDEIPR|KL 0.071 . cgd2_360 635 FDEIPRK|LK 0.080 . cgd2_360 637 EIPRKLK|DY 0.238 . cgd2_360 641 KLKDYSK|KF 0.068 . cgd2_360 642 LKDYSKK|FD 0.121 . cgd2_360 651 AEDEAVR|SE 0.081 . cgd2_360 654 EAVRSEK|RN 0.107 . cgd2_360 655 AVRSEKR|NI 0.133 . cgd2_360 661 RNIVLQK|RK 0.061 . cgd2_360 662 NIVLQKR|KV 0.228 . cgd2_360 663 IVLQKRK|VN 0.092 . cgd2_360 675 FNAILQK|IQ 0.067 . cgd2_360 680 QKIQEWK|VQ 0.061 . cgd2_360 687 VQQPLYK|EW 0.066 . cgd2_360 693 KEWLAAK|EV 0.063 . ____________________________^_________________

  • Fasta :-

    >cgd2_360 AGAAGATTTATTAAAAAGTTTGAAATATACTCTGGTTCTAATACTTGGGTATATAAAATA CACTTATATACTAGAATAATCTAAGCTCTAACTATTAGTAACTTCTAGAATTGAAGAGGG AAATATATGCATATGAATTATGTTTAAAGTTACTCGTGAAGAATTAGGTGAAGATATTGA TCTTTTGGAGTATTTAAGTGACTCCACATATGATGGGGAGGAAACTGAAGAATATATTTC CAAGAGATGTAATACAATAGAAGAACCACTGACTTTATCAGACTCATTTTCTAAAAGCTT TGTTATTTTCGGACTTCCATGTATTGGCTCAGATAAATATGAGAGATTTCTTAAAGCTCT TAGAACAATTATTAATCAAACCCTTAAAATGATGAGAGTGGAGTATGACGAAAATTTTTT ACTTGATGTACCTCAGGATGTAGATGGAAGCACAAAAGGAGTTGCTATATTGACATTTTC GAATTCATTCCAAGCAGAAACTGTTTGCCAAGCACTTTCAAAGGCACCATTTGATAAACA GACAAAATTTAATACAGTAATGTTTGATGATGTAAAAAGAATTATTGAACAAGATGAATC AGCTCCAGGACATTTTGAAACTCTATACCCACCACCGACTTTATTCAGTCGAGATGATGT AAGAAATTGGTTAATGGGGCCAAGGTGTAGAGAACAATTTGTTATTAGATACCAAAGCGC AACTGAGATCTATTCATTTGATTCTATTCAAAGAATTCCTGAATTAATTTATGACGGTGA AAGAGCTAAAGGAGGAAAAAGAGTTTGGACAGATTTTTCTGTGCAATGGAGTCCAATGGG TTCTTACTTAGTGACATTCCATCGTCAGGGTGTTGCACTTTGGGGAGGTGATGATTGGGA TAAGAAGATTAGATTTGAACACAAAGATGTTAAATTCATTGATTTCAGCCCAAATGAAGA ATATTTATTAACATGGGATGGTTCTTCTCCAGATTCAAGGTTTGATAAGGCAGTAAAAGT ATGGCATGTACTTTCTGGACGACTTTTAAGATGCTTTTCCACACCAACTATGACACTTAA CAATAATGGAACTGATAGTGGTTTACATTTCCTTTGGAGTCCAACTGGAAATTATCTTGC ACATTGCTCCGATAAAGGAGAACTTTTTGTCTATGAATCTTCCACAATGACTCTTGTAGA AGATCCTGCTACAGGTAATAAGAACCCATTAAAGTATCCACTTCAGTTCTTTGATTGGTC CCCTGAAGAAGACAACCTTTCAATTTGGTGTCCAGAAAGAGGAGATACACCAGGTAGACT TACTTTGCTTTCTATTAAGAATAGAAAAGAGTTGGCAATAAAGAATGTCTTTAATGTTAG AGAGGCATCTGTCCACTGGCAACCAAAAGGTCAGTATATGTGTCTTAAGGCTCTAGTTTC TAGAAAAGCTGGTAAAAAGGCAAAAAAAGAATATACTCAGCTTGAGATCTTTAGAGTAAA AGAGAAAAATGTTCCTGTTGATACTGTACATATTGAAGGTGTTACTGTCAAGTGCTTATC CTGGGAATCATCTAATAGATTTGCCATTGTTGTTGTAGATGATGTTACAAGATCCCAAAC ACTGAGATTTTACCAAGTGAATGCAACACAAACTGACTTTGTATGCTCATATTATTTAAC ATCTCCTGTTGACACAATTAAATGGAGTCCACTTGGTAGCTATTTTGTTTTAGGTGGATC TGGAGGAAATTTAACATTCTGTCAGCTCACAAATGAAAACAAATTTGATATCTTGCAAAA AGATGAGCATTTTATGTGTAACTGGATTCAATGGGATCCTACCGGTAGATATGTTACAAC AGCTTTCCAATCAAAGTTAGCTGAAGGTGCATATAAATACAGCACAGAAACAGGTTTCAT AGTTTGGTCTTTCCAAGGCAGACAACTTTACAACTCACCATTGGAGACATTTTACCAATT TATTTGGAGGCCTCATCCCCCTTCACTTCTTTCACAAGAAAAGTTTGATGAAATTCCTAG AAAACTTAAAGATTACAGCAAAAAGTTTGATGCTGAAGATGAGGCTGTCAGATCTGAAAA GAGAAATATTGTTCTCCAAAAGAGAAAAGTCAACGAGGATGAATTCAATGCTATTCTCCA AAAGATTCAAGAATGGAAGGTTCAGCAACCACTTTACAAAGAATGGCTTGCAGCAAAAGA AGTCCTACTTAATTCCTTACAATGGGAAGAACAAGAAGAAGTTATCGAGATTGAGCTTGA AACTATCCAGGAAGTTATTTCCACTGAGGTTTAGAAATGAGGCTATTCTATTTGTTTTCA TACTTCCTACAATACATATCTACTTTAGTTTATATCATTCATTTCACTATATAGTATTTT TATAGTATTCACTAATTAGCTTATTATT
  • Download Fasta

  • Fasta :-

    MFKVTREELGEDIDLLEYLSDSTYDGEETEEYISKRCNTIEEPLTLSDSFSKSFVIFGLP CIGSDKYERFLKALRTIINQTLKMMRVEYDENFLLDVPQDVDGSTKGVAILTFSNSFQAE TVCQALSKAPFDKQTKFNTVMFDDVKRIIEQDESAPGHFETLYPPPTLFSRDDVRNWLMG PRCREQFVIRYQSATEIYSFDSIQRIPELIYDGERAKGGKRVWTDFSVQWSPMGSYLVTF HRQGVALWGGDDWDKKIRFEHKDVKFIDFSPNEEYLLTWDGSSPDSRFDKAVKVWHVLSG RLLRCFSTPTMTLNNNGTDSGLHFLWSPTGNYLAHCSDKGELFVYESSTMTLVEDPATGN KNPLKYPLQFFDWSPEEDNLSIWCPERGDTPGRLTLLSIKNRKELAIKNVFNVREASVHW QPKGQYMCLKALVSRKAGKKAKKEYTQLEIFRVKEKNVPVDTVHIEGVTVKCLSWESSNR FAIVVVDDVTRSQTLRFYQVNATQTDFVCSYYLTSPVDTIKWSPLGSYFVLGGSGGNLTF CQLTNENKFDILQKDEHFMCNWIQWDPTGRYVTTAFQSKLAEGAYKYSTETGFIVWSFQG RQLYNSPLETFYQFIWRPHPPSLLSQEKFDEIPRKLKDYSKKFDAEDEAVRSEKRNIVLQ KRKVNEDEFNAILQKIQEWKVQQPLYKEWLAAKEVLLNSLQWEEQEEVIEIELETIQEVI STEV

  • title: WD40 repeat
  • coordinates: F226-H261
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
cgd2_360515 SYYLTSPVDT0.99unspcgd2_360515 SYYLTSPVDT0.99unspcgd2_360515 SYYLTSPVDT0.99unspcgd2_360606 SQLYNSPLET0.996unspcgd2_360652 SEAVRSEKRN0.993unspcgd2_36022 SYLSDSTYDG0.997unspcgd2_360286 SSSPDSRFDK0.996unsp

cgd2_360      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India