cgd2_530 | Proteasome subunit beta type

_IDPredictionOTHERSPmTPCS_Position
cgd2_530OTHER0.9974900.0010650.001445
No Results

  • Fasta :-

    >cgd2_530 MTYNGGAILAMKGKECVAFATDMRLGSNGYRTISTDFDKVIRPSSKTLMGFSGLATDIHT LTNLIKFKTNLYHLREEREIGVKALSHMTASILYSKRFSPYFVEPIVAGLDNNNVPFIAG YDLIGCLSVCSEFAISGTADNQLFGICESYYRPDLEPDELMEIVSQCMLSGIDRDAFSGW GCKVYLLTPEKLVTKTLKSRMD
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/cgd2_530.fa Sequence name : cgd2_530 Sequence length : 202 VALUES OF COMPUTED PARAMETERS Coef20 : 3.727 CoefTot : -0.863 ChDiff : -2 ZoneTo : 14 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.300 1.518 0.348 0.569 MesoH : -0.209 0.473 -0.217 0.288 MuHd_075 : 12.131 7.541 4.092 1.708 MuHd_095 : 17.851 9.584 5.891 3.087 MuHd_100 : 15.342 6.329 6.415 2.379 MuHd_105 : 10.595 3.462 5.793 1.543 Hmax_075 : 5.600 9.100 0.368 4.180 Hmax_095 : 13.125 10.675 3.223 4.244 Hmax_100 : 12.200 10.800 3.654 4.020 Hmax_105 : 10.300 10.200 3.351 4.330 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9738 0.0262 DFMC : 0.9662 0.0338
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 202 cgd2_530 MTYNGGAILAMKGKECVAFATDMRLGSNGYRTISTDFDKVIRPSSKTLMGFSGLATDIHTLTNLIKFKTNLYHLREEREI 80 GVKALSHMTASILYSKRFSPYFVEPIVAGLDNNNVPFIAGYDLIGCLSVCSEFAISGTADNQLFGICESYYRPDLEPDEL 160 MEIVSQCMLSGIDRDAFSGWGCKVYLLTPEKLVTKTLKSRMD 240 ................................................................................ 80 ................................................................................ 160 .......................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ cgd2_530 12 GAILAMK|GK 0.071 . cgd2_530 14 ILAMKGK|EC 0.068 . cgd2_530 24 AFATDMR|LG 0.092 . cgd2_530 31 LGSNGYR|TI 0.120 . cgd2_530 39 ISTDFDK|VI 0.068 . cgd2_530 42 DFDKVIR|PS 0.102 . cgd2_530 46 VIRPSSK|TL 0.063 . cgd2_530 66 TLTNLIK|FK 0.065 . cgd2_530 68 TNLIKFK|TN 0.068 . cgd2_530 75 TNLYHLR|EE 0.092 . cgd2_530 78 YHLREER|EI 0.239 . cgd2_530 83 EREIGVK|AL 0.069 . cgd2_530 96 ASILYSK|RF 0.063 . cgd2_530 97 SILYSKR|FS 0.146 . cgd2_530 152 ICESYYR|PD 0.064 . cgd2_530 174 MLSGIDR|DA 0.167 . cgd2_530 183 FSGWGCK|VY 0.051 . cgd2_530 191 YLLTPEK|LV 0.066 . cgd2_530 195 PEKLVTK|TL 0.059 . cgd2_530 198 LVTKTLK|SR 0.081 . cgd2_530 200 TKTLKSR|MD 0.095 . ____________________________^_________________

  • Fasta :-

    >cgd2_530 TCTATTATGACTTATAATGGTGGTGCCATTTTGGCAATGAAGGGAAAAGAGTGTGTTGCA TTTGCAACAGATATGAGACTTGGATCTAATGGATACAGAACTATAAGTACTGATTTTGAT AAAGTTATTAGACCAAGCTCAAAAACATTGATGGGATTTTCAGGTTTAGCTACTGATATT CACACTCTAACAAACTTAATCAAATTTAAAACAAACTTGTATCATTTAAGGGAAGAAAGA GAAATTGGTGTTAAAGCACTTAGCCATATGACAGCTTCAATATTATATAGTAAACGTTTC AGTCCATATTTTGTGGAACCAATTGTAGCAGGTCTTGATAATAATAATGTGCCTTTTATT GCTGGGTATGATCTTATTGGATGCTTATCAGTATGTAGCGAATTTGCAATTTCCGGAACC GCTGATAATCAACTTTTTGGTATCTGTGAATCATACTATAGACCTGATTTAGAACCTGAT GAACTTATGGAAATCGTCTCACAATGTATGCTTTCCGGTATAGATAGAGATGCATTTTCT GGATGGGGTTGCAAAGTTTATCTACTTACTCCTGAAAAGCTCGTCACCAAAACTTTAAAA TCAAGAATGGATTAATTTCCTATTTCTTGATCCAC
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  • Fasta :-

    MTYNGGAILAMKGKECVAFATDMRLGSNGYRTISTDFDKVIRPSSKTLMGFSGLATDIHT LTNLIKFKTNLYHLREEREIGVKALSHMTASILYSKRFSPYFVEPIVAGLDNNNVPFIAG YDLIGCLSVCSEFAISGTADNQLFGICESYYRPDLEPDELMEIVSQCMLSGIDRDAFSGW GCKVYLLTPEKLVTKTLKSRMD

    No Results
  • title: active site
  • coordinates: G6,D22,R24,K39,T138,D175,S178,G179
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
cgd2_530199 SKTLKSRMD-0.993unspcgd2_530199 SKTLKSRMD-0.993unspcgd2_530199 SKTLKSRMD-0.993unspcgd2_53044 SVIRPSSKTL0.99unspcgd2_53099 SSKRFSPYFV0.996unsp

cgd2_530      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India