cgd4_1170 | 26S proteasome subunit P45

_IDPredictionOTHERSPmTPCS_Position
cgd4_1170OTHER0.9999730.0000010.000026
No Results

  • Fasta :-

    >cgd4_1170 MGNSHGVLGEGGMKNNRKSKNNGKDEKKKLESAPPPMEMKRKRKQKGPPQYARLPAVVPN AKCRLRLLKYERIKDYLMMEQEFITSMESVKPSAETAEEEHNKVDDLRGSPMNIGTLEEI IDENHAIVSSSVGSEYYVNILSFVDKNQLEPGSSVLLHNKVYSVVGIMNDEVDPLVSVMK VDKAPLESYADIGGLEQQIQEIKEAVEIPLTHPELYDDIGIKPPKGVILYGPPGTGKTLL AKAVANETSATFLRVVGSELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAVGTKRH DSQSGGERDIQRTMLELLNQLDGFEARGDVKVIMATNKIESLDPALIRPGRIDRKIELPN PDCKTKRRIFQIHTSKMTLSDDVDLEEFIMAKDDISGADIKAICTEAGLLALRERRMRVT QEDLRKAKEKALYRKKGGIPEGLYL
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/cgd4_1170.fa Sequence name : cgd4_1170 Sequence length : 445 VALUES OF COMPUTED PARAMETERS Coef20 : 2.880 CoefTot : -2.613 ChDiff : -4 ZoneTo : 24 KR : 5 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.594 1.035 -0.028 0.411 MesoH : -0.840 0.246 -0.444 0.204 MuHd_075 : 17.070 16.561 7.116 3.298 MuHd_095 : 29.626 11.992 7.791 5.756 MuHd_100 : 34.637 11.207 9.391 6.245 MuHd_105 : 33.826 7.722 9.013 5.523 Hmax_075 : -8.800 1.750 -3.613 -0.480 Hmax_095 : 3.850 -0.600 -1.987 1.663 Hmax_100 : -3.200 -4.100 -2.992 0.800 Hmax_105 : 2.567 -4.200 -1.739 1.307 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9698 0.0302 DFMC : 0.9585 0.0415
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 445 cgd4_1170 MGNSHGVLGEGGMKNNRKSKNNGKDEKKKLESAPPPMEMKRKRKQKGPPQYARLPAVVPNAKCRLRLLKYERIKDYLMME 80 QEFITSMESVKPSAETAEEEHNKVDDLRGSPMNIGTLEEIIDENHAIVSSSVGSEYYVNILSFVDKNQLEPGSSVLLHNK 160 VYSVVGIMNDEVDPLVSVMKVDKAPLESYADIGGLEQQIQEIKEAVEIPLTHPELYDDIGIKPPKGVILYGPPGTGKTLL 240 AKAVANETSATFLRVVGSELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAVGTKRHDSQSGGERDIQRTMLELLNQ 320 LDGFEARGDVKVIMATNKIESLDPALIRPGRIDRKIELPNPDCKTKRRIFQIHTSKMTLSDDVDLEEFIMAKDDISGADI 400 KAICTEAGLLALRERRMRVTQEDLRKAKEKALYRKKGGIPEGLYL 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ............................................. 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ cgd4_1170 14 LGEGGMK|NN 0.059 . cgd4_1170 17 GGMKNNR|KS 0.082 . cgd4_1170 18 GMKNNRK|SK 0.141 . cgd4_1170 20 KNNRKSK|NN 0.275 . cgd4_1170 24 KSKNNGK|DE 0.081 . cgd4_1170 27 NNGKDEK|KK 0.059 . cgd4_1170 28 NGKDEKK|KL 0.106 . cgd4_1170 29 GKDEKKK|LE 0.137 . cgd4_1170 40 PPPMEMK|RK 0.062 . cgd4_1170 41 PPMEMKR|KR 0.195 . cgd4_1170 42 PMEMKRK|RK 0.114 . cgd4_1170 43 MEMKRKR|KQ 0.193 . cgd4_1170 44 EMKRKRK|QK 0.345 . cgd4_1170 46 KRKRKQK|GP 0.236 . cgd4_1170 53 GPPQYAR|LP 0.092 . cgd4_1170 62 AVVPNAK|CR 0.057 . cgd4_1170 64 VPNAKCR|LR 0.084 . cgd4_1170 66 NAKCRLR|LL 0.076 . cgd4_1170 69 CRLRLLK|YE 0.120 . cgd4_1170 72 RLLKYER|IK 0.079 . cgd4_1170 74 LKYERIK|DY 0.075 . cgd4_1170 91 TSMESVK|PS 0.065 . cgd4_1170 103 AEEEHNK|VD 0.060 . cgd4_1170 108 NKVDDLR|GS 0.099 . cgd4_1170 146 ILSFVDK|NQ 0.070 . cgd4_1170 160 SVLLHNK|VY 0.069 . cgd4_1170 180 PLVSVMK|VD 0.061 . cgd4_1170 183 SVMKVDK|AP 0.061 . cgd4_1170 203 QQIQEIK|EA 0.065 . cgd4_1170 222 YDDIGIK|PP 0.058 . cgd4_1170 225 IGIKPPK|GV 0.088 . cgd4_1170 237 GPPGTGK|TL 0.061 . cgd4_1170 242 GKTLLAK|AV 0.077 . cgd4_1170 254 TSATFLR|VV 0.199 . cgd4_1170 263 GSELIQK|YL 0.086 . cgd4_1170 270 YLGDGPK|LV 0.071 . cgd4_1170 273 DGPKLVR|EL 0.075 . cgd4_1170 277 LVRELFR|VA 0.129 . cgd4_1170 298 IDAVGTK|RH 0.060 . cgd4_1170 299 DAVGTKR|HD 0.219 . cgd4_1170 308 SQSGGER|DI 0.119 . cgd4_1170 312 GERDIQR|TM 0.092 . cgd4_1170 327 LDGFEAR|GD 0.132 . cgd4_1170 331 EARGDVK|VI 0.064 . cgd4_1170 338 VIMATNK|IE 0.059 . cgd4_1170 348 LDPALIR|PG 0.080 . cgd4_1170 351 ALIRPGR|ID 0.258 . cgd4_1170 354 RPGRIDR|KI 0.241 . cgd4_1170 355 PGRIDRK|IE 0.071 . cgd4_1170 364 LPNPDCK|TK 0.071 . cgd4_1170 366 NPDCKTK|RR 0.070 . cgd4_1170 367 PDCKTKR|RI 0.261 . cgd4_1170 368 DCKTKRR|IF 0.137 . cgd4_1170 376 FQIHTSK|MT 0.060 . cgd4_1170 392 EEFIMAK|DD 0.068 . cgd4_1170 401 ISGADIK|AI 0.071 . cgd4_1170 413 AGLLALR|ER 0.064 . cgd4_1170 415 LLALRER|RM 0.082 . cgd4_1170 416 LALRERR|MR 0.399 . cgd4_1170 418 LRERRMR|VT 0.232 . cgd4_1170 425 VTQEDLR|KA 0.071 . cgd4_1170 426 TQEDLRK|AK 0.103 . cgd4_1170 428 EDLRKAK|EK 0.109 . cgd4_1170 430 LRKAKEK|AL 0.095 . cgd4_1170 434 KEKALYR|KK 0.103 . cgd4_1170 435 EKALYRK|KG 0.094 . cgd4_1170 436 KALYRKK|GG 0.097 . ____________________________^_________________

  • Fasta :-

    >cgd4_1170 AATAATAAATAAATGCGTTAAATTTTAACTGTATTGTTATAATAGCATTAATAAAGTACA AGAAGATTTCTAAGGTACAAATTTCAATAAGGTAATAATTTTGAGGAGAAGAGTAATAAA AGGAATCTTTTGGAGAGACTGGCAATTCAAATTAAGGCAGATTTGAATATAATACACACA CAATAAAATATATGCTCAAGTAAGGTAAAGGTAGGTTAGAGAAAAGTATGGGAAATTCAC ATGGTGTACTTGGGGAGGGGGGGATGAAAAATAATAGGAAGTCAAAGAACAATGGTAAAG ATGAGAAAAAGAAATTAGAATCCGCCCCACCTCCAATGGAAATGAAAAGGAAAAGAAAGC AAAAAGGCCCACCACAATATGCTAGATTGCCGGCAGTAGTTCCAAATGCCAAATGTAGAC TAAGATTATTAAAGTATGAGAGAATTAAAGACTATTTAATGATGGAACAAGAATTTATTA CAAGTATGGAAAGTGTAAAGCCATCAGCAGAGACAGCAGAAGAAGAACACAATAAAGTGG ATGATTTAAGAGGGTCACCAATGAATATTGGAACTTTAGAGGAAATTATAGATGAGAATC ATGCAATAGTTTCATCATCAGTAGGGTCTGAGTATTATGTAAATATTTTATCGTTTGTAG ACAAGAACCAACTTGAACCTGGAAGTTCAGTATTATTACATAATAAAGTATATTCTGTTG TTGGAATAATGAATGATGAGGTGGATCCTTTAGTTTCTGTAATGAAAGTTGATAAAGCTC CTTTGGAAAGCTATGCAGATATTGGTGGTTTAGAACAGCAGATCCAAGAAATAAAGGAGG CTGTAGAAATTCCTTTAACACATCCTGAATTATATGATGACATTGGTATTAAACCTCCAA AAGGAGTAATTTTGTATGGTCCTCCAGGAACTGGTAAAACTCTTTTAGCTAAAGCTGTTG CAAATGAAACTTCAGCAACCTTTTTAAGGGTAGTTGGAAGTGAACTAATTCAAAAGTATT TAGGAGATGGACCAAAACTTGTACGTGAGTTATTCAGAGTTGCTGAGGAAAATGCTCCAA GTATTGTTTTTATTGATGAAATTGATGCTGTTGGTACTAAGAGACATGACTCTCAAAGTG GAGGTGAGAGAGATATTCAAAGAACTATGCTTGAATTACTTAATCAATTGGATGGATTTG AGGCAAGAGGGGATGTTAAAGTTATTATGGCAACTAATAAAATTGAAAGTCTAGATCCAG CTCTTATTAGACCTGGAAGAATTGATAGAAAGATTGAACTTCCCAATCCAGACTGTAAAA CTAAAAGAAGAATCTTTCAAATTCACACAAGCAAAATGACTCTATCTGATGATGTTGACT TGGAGGAATTTATTATGGCAAAAGATGATATTAGTGGGGCAGATATTAAAGCAATTTGTA CCGAAGCTGGTCTTCTGGCTCTTAGAGAAAGAAGGATGAGAGTTACACAAGAAGATCTCA GGAAAGCTAAAGAAAAGGCTTTATATAGAAAGAAGGGTGGAATACCTGAAGGCTTATATC TCTAGGCAACTTTTTCATAGACATTTTCCCGCCTTTGTCACTTCTAACTTTTATTATCAA TTTAAGTAAAATAATGAATCGGGATATGTAACAATGAATAAGTAGGTCTAATATATATCT GTTAGTTTTAT
  • Download Fasta

  • Fasta :-

    MGNSHGVLGEGGMKNNRKSKNNGKDEKKKLESAPPPMEMKRKRKQKGPPQYARLPAVVPN AKCRLRLLKYERIKDYLMMEQEFITSMESVKPSAETAEEEHNKVDDLRGSPMNIGTLEEI IDENHAIVSSSVGSEYYVNILSFVDKNQLEPGSSVLLHNKVYSVVGIMNDEVDPLVSVMK VDKAPLESYADIGGLEQQIQEIKEAVEIPLTHPELYDDIGIKPPKGVILYGPPGTGKTLL AKAVANETSATFLRVVGSELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAVGTKRH DSQSGGERDIQRTMLELLNQLDGFEARGDVKVIMATNKIESLDPALIRPGRIDRKIELPN PDCKTKRRIFQIHTSKMTLSDDVDLEEFIMAKDDISGADIKAICTEAGLLALRERRMRVT QEDLRKAKEKALYRKKGGIPEGLYL

  • title: ATP binding site
  • coordinates: P232,P233,G234,T235,G236,K237,T238,L239,D290,N337
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
cgd4_1170110 SDLRGSPMNI0.991unspcgd4_1170110 SDLRGSPMNI0.991unspcgd4_1170110 SDLRGSPMNI0.991unspcgd4_1170302 SKRHDSQSGG0.997unspcgd4_1170304 SHDSQSGGER0.994unspcgd4_1170396 SKDDISGADI0.99unspcgd4_117019 SNNRKSKNNG0.996unspcgd4_117089 STSMESVKPS0.994unsp

cgd4_1170      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India