cgd4_250 | Proteasome subunit alpha type

UniProt_ID: Q5CQL5

Computed_GO_Component_IDs: GO:0005839 GO:0019773
Computed_GO_Components: proteasome core complex proteasome core complex, alpha-subunit complex
Computed_GO_Function_IDs: GO:0004175 GO:0004298
Computed_GO_Functions: endopeptidase activity threonine-type endopeptidase activity
Computed_GO_Process_IDs: GO:0051603 GO:0006511
Computed_GO_Processes: proteolysis involved in cellular protein catabolic process ubiquitin-dependent protein catabolic process
Curated_GO_Component_IDs:
Curated_GO_Components:
Curated_GO_Function_IDs:
Curated_GO_Functions:
Curated_GO_Processes:

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	cgd4_250	OTHER	0.999609	0.000316	0.000075

No Results

Fasta :-
>cgd4_250 MSRRYDSRTTTFSPEGRLYQVEYALEAINNAAPTVGILCKEGVILGADKAIVSKLLDQGK SLEKIYTIDRHIIAAVAGLTADANILIAQARIDSQRYQYTYGEEQPVEQLVTQICDRKQS YTQFGGLRPFGVSFLFAGYDKNYGYQLYQSDPSGNFSGWKATAIGQNNQTATSLLKQEWN EDLTLEQGLHLVAKVLTKTMDTTSPTADKFEFSILTHNNESNKCSQKILSEKEIGELLEK VQKEIASENNAKNNSETNNQS
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/cgd4_250.fa Sequence name : cgd4_250 Sequence length : 261 VALUES OF COMPUTED PARAMETERS Coef20 : 4.248 CoefTot : 0.225 ChDiff : -5 ZoneTo : 5 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.082 1.912 0.191 0.669 MesoH : -0.776 0.548 -0.369 0.251 MuHd_075 : 23.006 4.092 3.592 6.083 MuHd_095 : 14.149 3.671 2.859 2.333 MuHd_100 : 17.816 7.474 3.532 4.255 MuHd_105 : 18.758 9.543 3.671 5.499 Hmax_075 : -3.850 -5.250 -3.650 0.210 Hmax_095 : -2.187 -3.325 -2.391 -0.289 Hmax_100 : 9.800 0.700 0.016 2.170 Hmax_105 : -2.450 -3.967 -2.377 1.132 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9002 0.0998 DFMC : 0.8703 0.1297

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 261 cgd4_250 MSRRYDSRTTTFSPEGRLYQVEYALEAINNAAPTVGILCKEGVILGADKAIVSKLLDQGKSLEKIYTIDRHIIAAVAGLT 80 ADANILIAQARIDSQRYQYTYGEEQPVEQLVTQICDRKQSYTQFGGLRPFGVSFLFAGYDKNYGYQLYQSDPSGNFSGWK 160 ATAIGQNNQTATSLLKQEWNEDLTLEQGLHLVAKVLTKTMDTTSPTADKFEFSILTHNNESNKCSQKILSEKEIGELLEK 240 VQKEIASENNAKNNSETNNQS 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ..................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ cgd4_250 3 ----MSR|RY 0.085 . cgd4_250 4 ---MSRR|YD 0.173 . cgd4_250 8 SRRYDSR|TT 0.113 . cgd4_250 17 TFSPEGR|LY 0.096 . cgd4_250 40 TVGILCK|EG 0.060 . cgd4_250 49 VILGADK|AI 0.061 . cgd4_250 54 DKAIVSK|LL 0.077 . cgd4_250 60 KLLDQGK|SL 0.096 . cgd4_250 64 QGKSLEK|IY 0.059 . cgd4_250 70 KIYTIDR|HI 0.095 . cgd4_250 91 ILIAQAR|ID 0.107 . cgd4_250 96 ARIDSQR|YQ 0.124 . cgd4_250 117 VTQICDR|KQ 0.084 . cgd4_250 118 TQICDRK|QS 0.100 . cgd4_250 128 TQFGGLR|PF 0.094 . cgd4_250 141 LFAGYDK|NY 0.072 . cgd4_250 160 GNFSGWK|AT 0.075 . cgd4_250 176 TATSLLK|QE 0.059 . cgd4_250 194 GLHLVAK|VL 0.086 . cgd4_250 198 VAKVLTK|TM 0.064 . cgd4_250 209 TSPTADK|FE 0.075 . cgd4_250 223 HNNESNK|CS 0.078 . cgd4_250 227 SNKCSQK|IL 0.085 . cgd4_250 232 QKILSEK|EI 0.077 . cgd4_250 240 IGELLEK|VQ 0.051 . cgd4_250 243 LLEKVQK|EI 0.065 . cgd4_250 252 ASENNAK|NN 0.077 . ____________________________^_________________

Fasta :-
>cgd4_250 GAAATTTAGCTGATCAAGTGTTTTTGAATTCAGATAAATATATAAATTGATTATTTATAT ATTTGTAATATAAATAGCAGAATAGCTATATTATCAATTAATTGTAGGACAAAGAAAACA GTAGTAACCGAGGAGATAATTCAATTTTGGTAGAGACTTATTAGTAGAAATGTCACGAAG ATACGATTCTAGAACAACAACATTTTCTCCTGAAGGTCGATTATATCAAGTAGAATATGC ATTGGAAGCAATTAATAATGCAGCTCCAACAGTTGGGATACTTTGTAAAGAAGGAGTAAT TCTGGGAGCAGATAAGGCAATAGTATCAAAATTACTTGATCAAGGAAAGTCACTGGAGAA AATTTATACAATAGATCGTCATATTATAGCTGCTGTAGCTGGTTTGACAGCTGATGCAAA TATTTTGATTGCCCAAGCACGTATAGACTCTCAAAGATATCAATATACATATGGCGAGGA ACAGCCAGTAGAACAATTAGTTACTCAAATATGCGATAGAAAACAAAGTTATACACAATT TGGTGGATTGAGACCATTTGGTGTATCATTTTTATTTGCTGGATATGATAAGAATTATGG ATACCAGTTATATCAGTCTGATCCATCTGGTAATTTCTCGGGATGGAAGGCTACTGCGAT TGGTCAAAATAACCAAACTGCTACATCTTTATTGAAACAAGAATGGAACGAGGACTTAAC ATTAGAACAAGGTCTTCACTTAGTTGCAAAAGTTTTAACCAAGACTATGGATACAACTTC TCCTACAGCAGATAAATTTGAGTTTTCTATTTTGACTCACAATAATGAATCTAATAAGTG CAGCCAGAAAATTTTGTCTGAAAAAGAAATTGGGGAATTGTTGGAAAAAGTCCAAAAAGA AATTGCTTCTGAAAATAATGCTAAGAATAACTCTGAAACTAATAACCAGAGTTAAGTGAA TATATATTTATAGATATTTGTTATTACTCAAATTATTATTCATAATACAATTTCCTAATG TCTTCTGACATTGTATTAGAGAATTTTCCATAGATGTTTCAAATATCTTTATTATTAACA TTAGATAGGAG
Download Fasta

Fasta :-

MSRRYDSRTTTFSPEGRLYQVEYALEAINNAAPTVGILCKEGVILGADKAIVSKLLDQGK SLEKIYTIDRHIIAAVAGLTADANILIAQARIDSQRYQYTYGEEQPVEQLVTQICDRKQS YTQFGGLRPFGVSFLFAGYDKNYGYQLYQSDPSGNFSGWKATAIGQNNQTATSLLKQEWN EDLTLEQGLHLVAKVLTKTMDTTSPTADKFEFSILTHNNESNKCSQKILSEKEIGELLEK VQKEIASENNAKNNSETNNQS

Proteasome subunits

title: active site
coordinates: A32,D48,A50,K64,Q166

	ID	Site	Position	Gscore	Iscore
	cgd4_250	S	2	0.513	0.085

	ID	Site	Position	Gscore	Iscore
	cgd4_250	S	2	0.513	0.085

	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method
	cgd4_250	204 S	MDTTSPTAD	0.992	unsp	cgd4_250	204 S	MDTTSPTAD	0.992	unsp	cgd4_250	204 S	MDTTSPTAD	0.992	unsp	cgd4_250	230 S	QKILSEKEI	0.996	unsp	cgd4_250	7 S	RRYDSRTTT	0.995	unsp	cgd4_250	13 S	TTTFSPEGR	0.99	unsp

cgd4_250 | Proteasome subunit alpha type

ID's

UniProt_ID: Q5CQL5

GEO Functions

Computed_GO_Component_IDs: GO:0005839 GO:0019773

Computed_GO_Components: proteasome core complex proteasome core complex, alpha-subunit complex

Computed_GO_Function_IDs: GO:0004175 GO:0004298

Computed_GO_Functions: endopeptidase activity threonine-type endopeptidase activity

Computed_GO_Process_IDs: GO:0051603 GO:0006511

Computed_GO_Processes: proteolysis involved in cellular protein catabolic process ubiquitin-dependent protein catabolic process

Curated_GO_Component_IDs:

Curated_GO_Components:

Curated_GO_Function_IDs:

Curated_GO_Functions:

Curated_GO_Processes:

Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

Proteasome subunits

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

cgd4_250

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India