cgd4_620 | Peptidase S26A signal peptidase I

  • Computed_GO_Component_IDs:  GO:0016020      

  • Computed_GO_Components:  membrane      

  • Computed_GO_Function_IDs:  GO:0008236      

  • Computed_GO_Functions:  serine-type peptidase activity      

  • Computed_GO_Process_IDs:  GO:0006508      

  • Computed_GO_Processes:  proteolysis      

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
cgd4_620OTHER0.7484310.1534990.098070
No Results

  • Fasta :-

    >cgd4_620 MPNKFIFRTSLKYAKILLGIHLIQKYGFSICITDGPSMIPTIGPKRELLLYEKLSISLSR IFKLNGNFPVNRNDIIIANSVENPEILVCKRVIGKEGDIVTVFPNYTLVSKFNNCNFIDF IHKRHSCFQMKIPPNYFWIQGDNFNNSRDSRNYGPIHESLIIGRVIYKLWPNPIFSKLSA IIRRKMDQINTLEN
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/cgd4_620.fa Sequence name : cgd4_620 Sequence length : 194 VALUES OF COMPUTED PARAMETERS Coef20 : 4.210 CoefTot : -1.059 ChDiff : 12 ZoneTo : 33 KR : 5 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.088 1.512 0.184 0.593 MesoH : -0.705 0.374 -0.385 0.205 MuHd_075 : 27.309 20.181 9.143 6.469 MuHd_095 : 37.145 17.220 10.469 7.736 MuHd_100 : 35.920 17.370 9.880 7.663 MuHd_105 : 34.315 17.262 10.330 7.558 Hmax_075 : 19.300 18.900 5.777 7.793 Hmax_095 : 13.000 18.100 3.494 5.311 Hmax_100 : 16.300 18.100 3.494 6.710 Hmax_105 : 13.200 17.733 3.038 5.800 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.2418 0.7582 DFMC : 0.3629 0.6371 This protein is probably imported in mitochondria. f(Ser) = 0.0606 f(Arg) = 0.0303 CMi = 0.53908 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 194 cgd4_620 MPNKFIFRTSLKYAKILLGIHLIQKYGFSICITDGPSMIPTIGPKRELLLYEKLSISLSRIFKLNGNFPVNRNDIIIANS 80 VENPEILVCKRVIGKEGDIVTVFPNYTLVSKFNNCNFIDFIHKRHSCFQMKIPPNYFWIQGDNFNNSRDSRNYGPIHESL 160 IIGRVIYKLWPNPIFSKLSAIIRRKMDQINTLEN 240 ................................................................................ 80 ................................................................................ 160 .................................. 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ cgd4_620 4 ---MPNK|FI 0.063 . cgd4_620 8 PNKFIFR|TS 0.080 . cgd4_620 12 IFRTSLK|YA 0.075 . cgd4_620 15 TSLKYAK|IL 0.063 . cgd4_620 25 GIHLIQK|YG 0.062 . cgd4_620 45 IPTIGPK|RE 0.051 . cgd4_620 46 PTIGPKR|EL 0.124 . cgd4_620 53 ELLLYEK|LS 0.052 . cgd4_620 60 LSISLSR|IF 0.086 . cgd4_620 63 SLSRIFK|LN 0.146 . cgd4_620 72 GNFPVNR|ND 0.095 . cgd4_620 90 PEILVCK|RV 0.087 . cgd4_620 91 EILVCKR|VI 0.232 . cgd4_620 95 CKRVIGK|EG 0.068 . cgd4_620 111 NYTLVSK|FN 0.061 . cgd4_620 123 FIDFIHK|RH 0.057 . cgd4_620 124 IDFIHKR|HS 0.253 . cgd4_620 131 HSCFQMK|IP 0.065 . cgd4_620 148 DNFNNSR|DS 0.102 . cgd4_620 151 NNSRDSR|NY 0.453 . cgd4_620 164 ESLIIGR|VI 0.083 . cgd4_620 168 IGRVIYK|LW 0.059 . cgd4_620 177 PNPIFSK|LS 0.061 . cgd4_620 183 KLSAIIR|RK 0.126 . cgd4_620 184 LSAIIRR|KM 0.205 . cgd4_620 185 SAIIRRK|MD 0.078 . ____________________________^_________________

  • Fasta :-

    >cgd4_620 GTAGTGATATATTAATAGCTATCTTTTGTGCCCTTCTAATGAATGCCAAACAAATTCATT TTTAGAACAAGCTTAAAATATGCCAAAATATTGTTGGGTATACACTTAATTCAAAAATAT GGGTTTAGTATATGTATTACGGATGGACCTTCAATGATTCCAACAATAGGACCGAAGAGA GAACTTTTGCTCTATGAAAAACTTTCTATTTCTTTATCCAGAATATTTAAACTGAATGGA AATTTTCCAGTCAACAGAAATGATATAATAATTGCAAATTCAGTGGAAAATCCAGAAATA TTAGTTTGCAAGAGAGTAATTGGTAAAGAAGGAGATATTGTAACAGTATTTCCAAATTAT ACATTAGTATCTAAATTTAATAATTGTAATTTTATAGATTTTATTCATAAACGTCATTCT TGTTTTCAAATGAAAATACCTCCAAATTATTTTTGGATACAAGGAGATAATTTTAATAAC TCCAGAGATTCCAGAAACTATGGCCCTATTCACGAATCATTGATAATAGGAAGGGTAATC TATAAGTTATGGCCGAATCCAATTTTTTCAAAATTATCTGCAATTATAAGGAGAAAAATG GATCAAATCAATACTTTAGAAAATTAATATTTAGTTGTATATAATTCAAATATAAACGAG TCTAAATTTCC
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  • Fasta :-

    MPNKFIFRTSLKYAKILLGIHLIQKYGFSICITDGPSMIPTIGPKRELLLYEKLSISLSR IFKLNGNFPVNRNDIIIANSVENPEILVCKRVIGKEGDIVTVFPNYTLVSKFNNCNFIDF IHKRHSCFQMKIPPNYFWIQGDNFNNSRDSRNYGPIHESLIIGRVIYKLWPNPIFSKLSA IIRRKMDQINTLEN

  • title: Catalytic site
  • coordinates: S37,K90
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
cgd4_620126 SHKRHSCFQM0.99unspcgd4_620126 SHKRHSCFQM0.99unspcgd4_620126 SHKRHSCFQM0.99unspcgd4_62010 SIFRTSLKYA0.994unspcgd4_62080 SIIANSVENP0.991unsp

cgd4_620      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India