cgd5_1820 | Proteasome alpha-subunit

UniProt_ID: A3FQI4

Computed_GO_Component_IDs: GO:0005839 GO:0019773
Computed_GO_Components: proteasome core complex proteasome core complex, alpha-subunit complex
Computed_GO_Function_IDs: GO:0004175 GO:0004298
Computed_GO_Functions: endopeptidase activity threonine-type endopeptidase activity
Computed_GO_Process_IDs: GO:0051603 GO:0006511
Computed_GO_Processes: proteolysis involved in cellular protein catabolic process ubiquitin-dependent protein catabolic process
Curated_GO_Component_IDs:
Curated_GO_Components:
Curated_GO_Function_IDs:
Curated_GO_Functions:
Curated_GO_Processes:

	_ID	Prediction	OTHER	SP	mTP	CS_Position
	cgd5_1820	OTHER	0.999631	0.000110	0.000258

No Results

Fasta :-
>cgd5_1820 MFASRNEYDRGVNTFSPEGRLFQVEYAIAAIKLGSTAVGIKTKEGVILASEKRISSPLLE PRNLEKIMIIDRHVGCCMSGLVADAKTMIDHARVESQNYFFTYNENIPTQSVVQSISDLA LDFSDIKEKGKKKSMSRPFGVAMLIAGADSDGSSSLWMTDPSGTYTQYSAAAIGTAQEGA EAILLENYNSNMSLKEAEDLALIVLRQVMEEKINSVNVEVAAVKEKKFIIYDDKEIQRVL DRLPPPTHIVPSQLS
Download Fasta

MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/cgd5_1820.fa Sequence name : cgd5_1820 Sequence length : 255 VALUES OF COMPUTED PARAMETERS Coef20 : 3.693 CoefTot : 0.254 ChDiff : -6 ZoneTo : 6 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.576 1.382 0.123 0.514 MesoH : -0.480 0.357 -0.379 0.202 MuHd_075 : 24.469 12.332 4.848 6.376 MuHd_095 : 26.781 14.319 7.669 5.214 MuHd_100 : 20.845 13.259 5.752 4.389 MuHd_105 : 14.932 12.218 3.934 3.950 Hmax_075 : 1.100 2.500 -1.437 2.600 Hmax_095 : 11.200 5.600 0.820 3.320 Hmax_100 : 2.400 2.900 -1.503 2.760 Hmax_105 : -6.300 2.400 -3.727 1.000 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7972 0.2028 DFMC : 0.8872 0.1128

##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 255 cgd5_1820 MFASRNEYDRGVNTFSPEGRLFQVEYAIAAIKLGSTAVGIKTKEGVILASEKRISSPLLEPRNLEKIMIIDRHVGCCMSG 80 LVADAKTMIDHARVESQNYFFTYNENIPTQSVVQSISDLALDFSDIKEKGKKKSMSRPFGVAMLIAGADSDGSSSLWMTD 160 PSGTYTQYSAAAIGTAQEGAEAILLENYNSNMSLKEAEDLALIVLRQVMEEKINSVNVEVAAVKEKKFIIYDDKEIQRVL 240 DRLPPPTHIVPSQLS 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ............... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ cgd5_1820 5 --MFASR|NE 0.079 . cgd5_1820 10 SRNEYDR|GV 0.162 . cgd5_1820 20 TFSPEGR|LF 0.107 . cgd5_1820 32 YAIAAIK|LG 0.066 . cgd5_1820 41 STAVGIK|TK 0.070 . cgd5_1820 43 AVGIKTK|EG 0.057 . cgd5_1820 52 VILASEK|RI 0.061 . cgd5_1820 53 ILASEKR|IS 0.197 . cgd5_1820 62 SPLLEPR|NL 0.114 . cgd5_1820 66 EPRNLEK|IM 0.067 . cgd5_1820 72 KIMIIDR|HV 0.141 . cgd5_1820 86 GLVADAK|TM 0.069 . cgd5_1820 93 TMIDHAR|VE 0.129 . cgd5_1820 127 LDFSDIK|EK 0.065 . cgd5_1820 129 FSDIKEK|GK 0.066 . cgd5_1820 131 DIKEKGK|KK 0.070 . cgd5_1820 132 IKEKGKK|KS 0.091 . cgd5_1820 133 KEKGKKK|SM 0.167 . cgd5_1820 137 KKKSMSR|PF 0.106 . cgd5_1820 195 NSNMSLK|EA 0.088 . cgd5_1820 206 LALIVLR|QV 0.116 . cgd5_1820 212 RQVMEEK|IN 0.067 . cgd5_1820 224 VEVAAVK|EK 0.057 . cgd5_1820 226 VAAVKEK|KF 0.068 . cgd5_1820 227 AAVKEKK|FI 0.121 . cgd5_1820 234 FIIYDDK|EI 0.069 . cgd5_1820 238 DDKEIQR|VL 0.078 . cgd5_1820 242 IQRVLDR|LP 0.069 . ____________________________^_________________

Fasta :-
>cgd5_1820 ATGTTTGCTTCAAGGAATGAATATGACAGGGGAGTGAACACATTTTCACCTGAAGGCCGT TTGTTTCAGGTAGAATATGCAATTGCTGCAATTAAGTTAGGCTCAACTGCAGTTGGAATA AAAACAAAAGAAGGTGTTATCCTTGCAAGCGAGAAGCGTATTAGCTCACCTTTATTGGAA CCAAGAAATCTAGAGAAGATCATGATAATTGATAGGCACGTTGGCTGTTGTATGAGCGGA CTTGTTGCAGACGCAAAAACGATGATAGATCATGCTAGGGTGGAATCTCAGAATTATTTT TTCACATATAATGAGAATATTCCAACTCAGTCTGTAGTCCAATCTATCAGCGATTTAGCA TTGGATTTCTCCGATATTAAAGAAAAAGGCAAGAAAAAGTCGATGTCTCGCCCTTTTGGA GTAGCAATGTTAATAGCTGGAGCAGATAGCGACGGTAGTTCAAGTTTGTGGATGACGGAC CCTTCAGGGACATATACTCAATATTCGGCAGCAGCTATAGGCACAGCTCAAGAAGGTGCA GAGGCCATTCTATTAGAAAACTACAATTCAAATATGTCATTGAAAGAAGCAGAAGATTTA GCGCTCATTGTTCTTAGACAAGTTATGGAAGAGAAAATCAATTCAGTGAACGTAGAAGTT GCTGCTGTTAAAGAAAAAAAATTCATTATTTATGACGACAAAGAGATCCAAAGAGTTTTG GACCGTCTTCCTCCACCTACACACATTGTGCCTTCTCAACTTTCATAA
Download Fasta

Fasta :-

MFASRNEYDRGVNTFSPEGRLFQVEYAIAAIKLGSTAVGIKTKEGVILASEKRISSPLLE PRNLEKIMIIDRHVGCCMSGLVADAKTMIDHARVESQNYFFTYNENIPTQSVVQSISDLA LDFSDIKEKGKKKSMSRPFGVAMLIAGADSDGSSSLWMTDPSGTYTQYSAAAIGTAQEGA EAILLENYNSNMSLKEAEDLALIVLRQVMEEKINSVNVEVAAVKEKKFIIYDDKEIQRVL DRLPPPTHIVPSQLS

Proteasome subunits

title: active site
coordinates: S35,E51,R53,K66,T175

	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore
	cgd5_1820	S	255	0.565	0.029	cgd5_1820	S	252	0.509	0.237

	ID	Site	Position	Gscore	Iscore	ID	Site	Position	Gscore	Iscore
	cgd5_1820	S	255	0.565	0.029	cgd5_1820	S	252	0.509	0.237

	ID	Site	Peptide	Score	Method	ID	Site	Peptide	Score	Method
	cgd5_1820	134 S	GKKKSMSRP	0.992	unsp	cgd5_1820	193 S	NSNMSLKEA	0.997	unsp

cgd5_1820 | Proteasome alpha-subunit

ID's

UniProt_ID: A3FQI4

GEO Functions

Computed_GO_Component_IDs: GO:0005839 GO:0019773

Computed_GO_Components: proteasome core complex proteasome core complex, alpha-subunit complex

Computed_GO_Function_IDs: GO:0004175 GO:0004298

Computed_GO_Functions: endopeptidase activity threonine-type endopeptidase activity

Computed_GO_Process_IDs: GO:0051603 GO:0006511

Computed_GO_Processes: proteolysis involved in cellular protein catabolic process ubiquitin-dependent protein catabolic process

Curated_GO_Component_IDs:

Curated_GO_Components:

Curated_GO_Function_IDs:

Curated_GO_Functions:

Curated_GO_Processes:

Subcellular Localization

Targetp

Signalp

Fasta :-

Mitoprot

ProPeptide Prediction

Sequence

Nucleotide sequence

Fasta :-

Protein sequence

Fasta :-

Domains

Proteasome subunits

Structure

Post Translational Modifications

N_Linked Glycosylation

O_Linked Glycosylation

Phosphorylation

Protein-Protein Interaction

String

cgd5_1820

Literature

PubMed

Google Scholar

Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India