cgd5_2410 | Beta-lactamase/transpeptidase-like

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_IDPredictionOTHERSPmTPCS_Position
cgd5_2410OTHER0.9973120.0023780.000310
No Results

  • Fasta :-

    >cgd5_2410 MKSGQINDLNLMDYWPNDIIYFVRILSLLRGICAELNESIPILKILSRRAQQFLYLESIN LELNKQQLLKRRFTNKFERRLSDYIEKIMNENNVLGLQIAVIKNGKNLVNISKGIKGELN GNQIDENTLFNGFFINLGILVIAILICVEKGYISLDDPICHYWDGFIRYGKRNITLRHVL NHRSGVISFFPEDMGLKELLNYEKMVRIIEDSAPQVPINQITRYNPYFLGWILSELIALL TNQSTAKFIEENIINPFNLSDGIKMYLPEYSLNNDQVSIYQSEKYDETNIGTNNNNNKFL FPLFSPRSSSSFFAQEEFSSSIMRLSNIKSKLENSNGTQLMNEIKDIIIQKLTPKRINKE EKEKEKEKEKNINDYNEEDNNDENANMIDFYERCALVNRKMKFSSISFKQVLEKLKSSDL YKLKNYGYQDFNKTKINFKLSTLEYFFLKPHILDPLIYNSKKLINKWIPPTNGRYTSLSL AKLYDHLIRGEIIGDELLKQVIKNESITFDNSIEGLILTYGGPRKWSLGFQILECKKLYY HQNNQKDDDQPCFKGIGQFDTGGNLSFCFPEIDLSIAILTNDYVKGSYISQSILRYILEN FGLYLNNYVPLHFS
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/cgd5_2410.fa Sequence name : cgd5_2410 Sequence length : 614 VALUES OF COMPUTED PARAMETERS Coef20 : 3.183 CoefTot : -0.540 ChDiff : 2 ZoneTo : 7 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.194 2.818 0.554 0.941 MesoH : -0.580 0.534 -0.357 0.307 MuHd_075 : 29.820 13.600 5.859 4.876 MuHd_095 : 21.123 7.370 5.124 3.327 MuHd_100 : 15.061 7.384 2.883 2.899 MuHd_105 : 6.090 6.956 1.107 1.625 Hmax_075 : 2.683 2.683 -3.438 2.707 Hmax_095 : 3.100 1.200 -2.574 2.890 Hmax_100 : -0.800 -0.700 -3.937 1.920 Hmax_105 : -4.433 1.400 -4.119 1.062 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9904 0.0096 DFMC : 0.9922 0.0078
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 614 cgd5_2410 MKSGQINDLNLMDYWPNDIIYFVRILSLLRGICAELNESIPILKILSRRAQQFLYLESINLELNKQQLLKRRFTNKFERR 80 LSDYIEKIMNENNVLGLQIAVIKNGKNLVNISKGIKGELNGNQIDENTLFNGFFINLGILVIAILICVEKGYISLDDPIC 160 HYWDGFIRYGKRNITLRHVLNHRSGVISFFPEDMGLKELLNYEKMVRIIEDSAPQVPINQITRYNPYFLGWILSELIALL 240 TNQSTAKFIEENIINPFNLSDGIKMYLPEYSLNNDQVSIYQSEKYDETNIGTNNNNNKFLFPLFSPRSSSSFFAQEEFSS 320 SIMRLSNIKSKLENSNGTQLMNEIKDIIIQKLTPKRINKEEKEKEKEKEKNINDYNEEDNNDENANMIDFYERCALVNRK 400 MKFSSISFKQVLEKLKSSDLYKLKNYGYQDFNKTKINFKLSTLEYFFLKPHILDPLIYNSKKLINKWIPPTNGRYTSLSL 480 AKLYDHLIRGEIIGDELLKQVIKNESITFDNSIEGLILTYGGPRKWSLGFQILECKKLYYHQNNQKDDDQPCFKGIGQFD 560 TGGNLSFCFPEIDLSIAILTNDYVKGSYISQSILRYILENFGLYLNNYVPLHFS 640 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ...................................................... 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ cgd5_2410 2 -----MK|SG 0.076 . cgd5_2410 24 DIIYFVR|IL 0.088 . cgd5_2410 30 RILSLLR|GI 0.089 . cgd5_2410 44 ESIPILK|IL 0.064 . cgd5_2410 48 ILKILSR|RA 0.094 . cgd5_2410 49 LKILSRR|AQ 0.107 . cgd5_2410 65 INLELNK|QQ 0.058 . cgd5_2410 70 NKQQLLK|RR 0.059 . cgd5_2410 71 KQQLLKR|RF 0.142 . cgd5_2410 72 QQLLKRR|FT 0.197 . cgd5_2410 76 KRRFTNK|FE 0.072 . cgd5_2410 79 FTNKFER|RL 0.112 . cgd5_2410 80 TNKFERR|LS 0.216 . cgd5_2410 87 LSDYIEK|IM 0.058 . cgd5_2410 103 LQIAVIK|NG 0.059 . cgd5_2410 106 AVIKNGK|NL 0.059 . cgd5_2410 113 NLVNISK|GI 0.074 . cgd5_2410 116 NISKGIK|GE 0.060 . cgd5_2410 150 ILICVEK|GY 0.063 . cgd5_2410 168 YWDGFIR|YG 0.077 . cgd5_2410 171 GFIRYGK|RN 0.115 . cgd5_2410 172 FIRYGKR|NI 0.113 . cgd5_2410 177 KRNITLR|HV 0.170 . cgd5_2410 183 RHVLNHR|SG 0.097 . cgd5_2410 197 PEDMGLK|EL 0.058 . cgd5_2410 204 ELLNYEK|MV 0.084 . cgd5_2410 207 NYEKMVR|II 0.109 . cgd5_2410 223 PINQITR|YN 0.094 . cgd5_2410 247 TNQSTAK|FI 0.099 . cgd5_2410 264 NLSDGIK|MY 0.066 . cgd5_2410 284 SIYQSEK|YD 0.076 . cgd5_2410 298 TNNNNNK|FL 0.087 . cgd5_2410 307 FPLFSPR|SS 0.153 . cgd5_2410 324 FSSSIMR|LS 0.095 . cgd5_2410 329 MRLSNIK|SK 0.067 . cgd5_2410 331 LSNIKSK|LE 0.072 . cgd5_2410 345 QLMNEIK|DI 0.084 . cgd5_2410 351 KDIIIQK|LT 0.061 . cgd5_2410 355 IQKLTPK|RI 0.071 . cgd5_2410 356 QKLTPKR|IN 0.131 . cgd5_2410 359 TPKRINK|EE 0.158 . cgd5_2410 362 RINKEEK|EK 0.078 . cgd5_2410 364 NKEEKEK|EK 0.068 . cgd5_2410 366 EEKEKEK|EK 0.072 . cgd5_2410 368 KEKEKEK|EK 0.064 . cgd5_2410 370 KEKEKEK|NI 0.067 . cgd5_2410 393 MIDFYER|CA 0.096 . cgd5_2410 399 RCALVNR|KM 0.077 . cgd5_2410 400 CALVNRK|MK 0.079 . cgd5_2410 402 LVNRKMK|FS 0.302 . cgd5_2410 409 FSSISFK|QV 0.123 . cgd5_2410 414 FKQVLEK|LK 0.064 . cgd5_2410 416 QVLEKLK|SS 0.066 . cgd5_2410 422 KSSDLYK|LK 0.077 . cgd5_2410 424 SDLYKLK|NY 0.072 . cgd5_2410 433 GYQDFNK|TK 0.061 . cgd5_2410 435 QDFNKTK|IN 0.067 . cgd5_2410 439 KTKINFK|LS 0.058 . cgd5_2410 449 LEYFFLK|PH 0.057 . cgd5_2410 461 PLIYNSK|KL 0.056 . cgd5_2410 462 LIYNSKK|LI 0.114 . cgd5_2410 466 SKKLINK|WI 0.064 . cgd5_2410 474 IPPTNGR|YT 0.107 . cgd5_2410 482 TSLSLAK|LY 0.073 . cgd5_2410 489 LYDHLIR|GE 0.086 . cgd5_2410 499 IGDELLK|QV 0.078 . cgd5_2410 503 LLKQVIK|NE 0.065 . cgd5_2410 524 LTYGGPR|KW 0.087 . cgd5_2410 525 TYGGPRK|WS 0.078 . cgd5_2410 536 FQILECK|KL 0.061 . cgd5_2410 537 QILECKK|LY 0.081 . cgd5_2410 546 YHQNNQK|DD 0.067 . cgd5_2410 554 DDQPCFK|GI 0.088 . cgd5_2410 585 LTNDYVK|GS 0.068 . cgd5_2410 595 ISQSILR|YI 0.096 . ____________________________^_________________

  • Fasta :-

    >cgd5_2410 GAGTCAGGATATGCAGCGTATAAAACAGCAACGGAACTTTCATATATGAAAAGTGGACAA ATTAATGATTTAAATCTAATGGATTACTGGCCAAATGATATAATATATTTTGTAAGGATT TTATCGTTATTACGTGGTATATGTGCTGAATTGAATGAGAGTATACCGATTTTGAAAATA TTATCCAGAAGAGCACAACAATTCTTATATTTAGAGTCAATTAATTTAGAATTAAATAAA CAACAGTTATTAAAAAGAAGATTTACAAATAAATTTGAAAGGAGATTAAGCGATTACATT GAAAAAATAATGAATGAAAATAATGTATTGGGATTACAAATAGCTGTTATAAAGAATGGA AAGAATTTAGTAAATATTTCAAAAGGTATTAAGGGAGAATTAAATGGAAATCAGATTGAT GAAAATACATTATTTAATGGCTTCTTTATCAATCTTGGAATTTTGGTAATTGCAATATTA ATATGTGTGGAAAAGGGTTATATATCTCTGGATGATCCAATTTGTCATTATTGGGATGGT TTTATAAGATATGGAAAGAGGAACATAACATTAAGGCATGTTCTTAATCATAGATCTGGT GTAATATCGTTTTTTCCAGAGGATATGGGTTTAAAAGAATTGTTAAATTATGAAAAGATG GTCCGAATAATTGAAGATTCTGCTCCACAGGTTCCAATAAATCAAATTACACGATATAAT CCTTATTTTTTAGGTTGGATATTATCGGAATTGATAGCATTATTAACAAATCAATCAACA GCAAAGTTTATAGAGGAAAATATAATAAACCCATTTAATTTATCTGATGGTATAAAGATG TATTTACCTGAGTATAGCTTGAATAATGACCAAGTAAGTATTTATCAATCTGAAAAGTAT GATGAAACAAATATTGGGACTAATAATAATAATAATAAGTTCTTATTTCCTCTATTTTCC CCACGTTCTTCATCATCATTTTTTGCTCAAGAAGAATTTTCTTCAAGTATAATGAGATTA TCAAATATTAAAAGTAAATTAGAAAATAGTAATGGTACTCAATTGATGAATGAAATAAAA GATATAATAATTCAAAAGTTAACCCCAAAAAGAATAAATAAGGAAGAAAAAGAAAAGGAA AAAGAGAAGGAAAAAAATATTAATGATTATAATGAAGAAGATAATAATGATGAGAATGCT AATATGATTGATTTTTATGAAAGATGTGCATTGGTAAATAGAAAAATGAAGTTTTCTTCA ATATCTTTTAAACAAGTACTTGAAAAACTTAAATCATCTGACTTATATAAATTAAAAAAT TATGGTTATCAAGATTTTAACAAAACAAAAATCAATTTTAAATTATCAACCTTGGAGTAT TTTTTTTTAAAACCACATATATTAGATCCCTTAATATATAATTCAAAAAAATTAATAAAT AAATGGATACCACCTACAAATGGAAGATATACATCTTTATCATTAGCAAAATTATATGAC CACTTAATTAGAGGAGAGATTATAGGAGATGAATTATTAAAACAAGTTATTAAAAATGAA TCAATTACTTTTGATAATTCTATCGAAGGATTAATATTAACATATGGAGGTCCTAGAAAA TGGTCTCTTGGGTTTCAAATTTTAGAATGTAAAAAACTTTATTATCATCAAAATAATCAA AAAGATGATGATCAACCTTGTTTTAAAGGAATCGGTCAATTTGATACTGGTGGTAATTTA TCATTTTGTTTTCCAGAAATTGATTTATCTATTGCCATTCTAACAAATGATTATGTTAAA GGATCTTATATATCACAATCAATATTACGTTACATATTAGAAAACTTTGGATTATATCTG AACAATTACGTTCCATTACATTTTTCTTAG
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  • Fasta :-

    MKSGQINDLNLMDYWPNDIIYFVRILSLLRGICAELNESIPILKILSRRAQQFLYLESIN LELNKQQLLKRRFTNKFERRLSDYIEKIMNENNVLGLQIAVIKNGKNLVNISKGIKGELN GNQIDENTLFNGFFINLGILVIAILICVEKGYISLDDPICHYWDGFIRYGKRNITLRHVL NHRSGVISFFPEDMGLKELLNYEKMVRIIEDSAPQVPINQITRYNPYFLGWILSELIALL TNQSTAKFIEENIINPFNLSDGIKMYLPEYSLNNDQVSIYQSEKYDETNIGTNNNNNKFL FPLFSPRSSSSFFAQEEFSSSIMRLSNIKSKLENSNGTQLMNEIKDIIIQKLTPKRINKE EKEKEKEKEKNINDYNEEDNNDENANMIDFYERCALVNRKMKFSSISFKQVLEKLKSSDL YKLKNYGYQDFNKTKINFKLSTLEYFFLKPHILDPLIYNSKKLINKWIPPTNGRYTSLSL AKLYDHLIRGEIIGDELLKQVIKNESITFDNSIEGLILTYGGPRKWSLGFQILECKKLYY HQNNQKDDDQPCFKGIGQFDTGGNLSFCFPEIDLSIAILTNDYVKGSYISQSILRYILEN FGLYLNNYVPLHFS

    No Results
No Results
No Results
IDSitePeptideScoreMethod
cgd5_241082 SERRLSDYIE0.996unsp

cgd5_2410      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India