cgd6_1530 | DNA repair protein Rad4

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0003677      

  • Computed_GO_Functions:  DNA binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
cgd6_1530OTHER0.9923970.0047400.002862
No Results

  • Fasta :-

    >cgd6_1530 MQKVKNEARQVYILGWLIHLRILNRIVDNIFIKSHILSLYLYYNQEYDTQKSIRGIYQWF RKYFKTYYLPNEYWIYKLHNFEAKTNNAFSKSNWMGAYYSLFLNEGKDFAPCLNGVMYNT IGRVENNFLEKFQEIYRQFAPLIDQRSFFLGKILGRMISSILSGKCSAEASNILFAALVR SLGHHCRLTLFIPPIINFKKSCELQCNDRRAELWVEVFEPKFNKWISVDIHRGGWNFTGC STVPFVTYPEKNISSIEHNSDKGLFSKLFLSEFNDDSDDSDKSLSLKKITPISVIPLKKT ETRQRSVKYETSNIAEQDEQRESLAFEFSNKKKTESLTLTQLQCKIDISRTNIKHKINES IGWWIISVNEYGYLRETTGRYVSDWSQVFQAQQKNSFKQKVESIISTINSTSNQYSSRLL KLELLDDFELEKIIHENDVIPISKTSFKNHPKYAIISCLNSLEIIHPKEPIVGYFQGEPI YLRENVQTLKTRTQWDQEQREIKIGQQPIKIIFKKKNDDVDLKGKVKLEYYAEFQTQIKP LAELNHLDQIPKDHFKSINISIKGNIPNSCVHIKDSCEGLNNDKVMFTSRYYSTWKTENI VDIIKRSNIDYARAFIGHDFKNGSKPNYDGVIIKKKDVTLLQSLKKRFELMNINKMANFI WNDVLQSAKDFLNSLSRNNLSKNTLNKDYDPGLEPNCQKLINVSYKFCKIKNLSERLLEE SYKAINKKKRKQIDT
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/cgd6_1530.fa Sequence name : cgd6_1530 Sequence length : 735 VALUES OF COMPUTED PARAMETERS Coef20 : 3.794 CoefTot : -1.543 ChDiff : 26 ZoneTo : 45 KR : 6 DE : 2 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.047 1.371 0.009 0.458 MesoH : -0.504 0.500 -0.304 0.203 MuHd_075 : 35.584 33.549 11.565 10.115 MuHd_095 : 43.895 22.265 10.418 9.406 MuHd_100 : 41.475 25.149 10.569 8.648 MuHd_105 : 39.687 27.951 10.847 9.352 Hmax_075 : 21.200 28.800 5.871 9.000 Hmax_095 : 17.150 19.250 4.761 6.895 Hmax_100 : 18.400 23.800 4.413 7.020 Hmax_105 : 14.350 21.117 4.040 6.921 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.4837 0.5163 DFMC : 0.6433 0.3567
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 735 cgd6_1530 MQKVKNEARQVYILGWLIHLRILNRIVDNIFIKSHILSLYLYYNQEYDTQKSIRGIYQWFRKYFKTYYLPNEYWIYKLHN 80 FEAKTNNAFSKSNWMGAYYSLFLNEGKDFAPCLNGVMYNTIGRVENNFLEKFQEIYRQFAPLIDQRSFFLGKILGRMISS 160 ILSGKCSAEASNILFAALVRSLGHHCRLTLFIPPIINFKKSCELQCNDRRAELWVEVFEPKFNKWISVDIHRGGWNFTGC 240 STVPFVTYPEKNISSIEHNSDKGLFSKLFLSEFNDDSDDSDKSLSLKKITPISVIPLKKTETRQRSVKYETSNIAEQDEQ 320 RESLAFEFSNKKKTESLTLTQLQCKIDISRTNIKHKINESIGWWIISVNEYGYLRETTGRYVSDWSQVFQAQQKNSFKQK 400 VESIISTINSTSNQYSSRLLKLELLDDFELEKIIHENDVIPISKTSFKNHPKYAIISCLNSLEIIHPKEPIVGYFQGEPI 480 YLRENVQTLKTRTQWDQEQREIKIGQQPIKIIFKKKNDDVDLKGKVKLEYYAEFQTQIKPLAELNHLDQIPKDHFKSINI 560 SIKGNIPNSCVHIKDSCEGLNNDKVMFTSRYYSTWKTENIVDIIKRSNIDYARAFIGHDFKNGSKPNYDGVIIKKKDVTL 640 LQSLKKRFELMNINKMANFIWNDVLQSAKDFLNSLSRNNLSKNTLNKDYDPGLEPNCQKLINVSYKFCKIKNLSERLLEE 720 SYKAINKKKRKQIDT 800 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ................................................................................ 720 ............... 800 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ cgd6_1530 3 ----MQK|VK 0.060 . cgd6_1530 5 --MQKVK|NE 0.061 . cgd6_1530 9 KVKNEAR|QV 0.141 . cgd6_1530 21 GWLIHLR|IL 0.099 . cgd6_1530 25 HLRILNR|IV 0.132 . cgd6_1530 33 VDNIFIK|SH 0.080 . cgd6_1530 51 QEYDTQK|SI 0.099 . cgd6_1530 54 DTQKSIR|GI 0.138 . cgd6_1530 61 GIYQWFR|KY 0.081 . cgd6_1530 62 IYQWFRK|YF 0.091 . cgd6_1530 65 WFRKYFK|TY 0.056 . cgd6_1530 77 NEYWIYK|LH 0.057 . cgd6_1530 84 LHNFEAK|TN 0.071 . cgd6_1530 91 TNNAFSK|SN 0.121 . cgd6_1530 107 LFLNEGK|DF 0.074 . cgd6_1530 123 MYNTIGR|VE 0.075 . cgd6_1530 131 ENNFLEK|FQ 0.077 . cgd6_1530 137 KFQEIYR|QF 0.082 . cgd6_1530 146 APLIDQR|SF 0.104 . cgd6_1530 152 RSFFLGK|IL 0.082 . cgd6_1530 156 LGKILGR|MI 0.123 . cgd6_1530 165 SSILSGK|CS 0.065 . cgd6_1530 180 LFAALVR|SL 0.131 . cgd6_1530 187 SLGHHCR|LT 0.105 . cgd6_1530 199 PPIINFK|KS 0.059 . cgd6_1530 200 PIINFKK|SC 0.158 . cgd6_1530 209 ELQCNDR|RA 0.083 . cgd6_1530 210 LQCNDRR|AE 0.115 . cgd6_1530 221 VEVFEPK|FN 0.066 . cgd6_1530 224 FEPKFNK|WI 0.073 . cgd6_1530 232 ISVDIHR|GG 0.083 . cgd6_1530 251 FVTYPEK|NI 0.076 . cgd6_1530 262 IEHNSDK|GL 0.082 . cgd6_1530 267 DKGLFSK|LF 0.060 . cgd6_1530 282 DSDDSDK|SL 0.081 . cgd6_1530 287 DKSLSLK|KI 0.074 . cgd6_1530 288 KSLSLKK|IT 0.081 . cgd6_1530 298 ISVIPLK|KT 0.073 . cgd6_1530 299 SVIPLKK|TE 0.090 . cgd6_1530 303 LKKTETR|QR 0.112 . cgd6_1530 305 KTETRQR|SV 0.183 . cgd6_1530 308 TRQRSVK|YE 0.185 . cgd6_1530 321 AEQDEQR|ES 0.085 . cgd6_1530 331 AFEFSNK|KK 0.062 . cgd6_1530 332 FEFSNKK|KT 0.081 . cgd6_1530 333 EFSNKKK|TE 0.141 . cgd6_1530 345 LTQLQCK|ID 0.058 . cgd6_1530 350 CKIDISR|TN 0.079 . cgd6_1530 354 ISRTNIK|HK 0.065 . cgd6_1530 356 RTNIKHK|IN 0.096 . cgd6_1530 375 NEYGYLR|ET 0.070 . cgd6_1530 380 LRETTGR|YV 0.182 . cgd6_1530 394 VFQAQQK|NS 0.065 . cgd6_1530 398 QQKNSFK|QK 0.067 . cgd6_1530 400 KNSFKQK|VE 0.083 . cgd6_1530 418 SNQYSSR|LL 0.093 . cgd6_1530 421 YSSRLLK|LE 0.091 . cgd6_1530 432 DDFELEK|II 0.059 . cgd6_1530 444 DVIPISK|TS 0.058 . cgd6_1530 448 ISKTSFK|NH 0.061 . cgd6_1530 452 SFKNHPK|YA 0.080 . cgd6_1530 468 LEIIHPK|EP 0.070 . cgd6_1530 483 GEPIYLR|EN 0.077 . cgd6_1530 490 ENVQTLK|TR 0.057 . cgd6_1530 492 VQTLKTR|TQ 0.103 . cgd6_1530 500 QWDQEQR|EI 0.096 . cgd6_1530 503 QEQREIK|IG 0.127 . cgd6_1530 510 IGQQPIK|II 0.077 . cgd6_1530 514 PIKIIFK|KK 0.059 . cgd6_1530 515 IKIIFKK|KN 0.132 . cgd6_1530 516 KIIFKKK|ND 0.129 . cgd6_1530 523 NDDVDLK|GK 0.059 . cgd6_1530 525 DVDLKGK|VK 0.054 . cgd6_1530 527 DLKGKVK|LE 0.065 . cgd6_1530 539 EFQTQIK|PL 0.059 . cgd6_1530 552 HLDQIPK|DH 0.073 . cgd6_1530 556 IPKDHFK|SI 0.116 . cgd6_1530 563 SINISIK|GN 0.076 . cgd6_1530 574 NSCVHIK|DS 0.104 . cgd6_1530 584 EGLNNDK|VM 0.055 . cgd6_1530 590 KVMFTSR|YY 0.109 . cgd6_1530 596 RYYSTWK|TE 0.058 . cgd6_1530 605 NIVDIIK|RS 0.053 . cgd6_1530 606 IVDIIKR|SN 0.281 . cgd6_1530 613 SNIDYAR|AF 0.094 . cgd6_1530 621 FIGHDFK|NG 0.059 . cgd6_1530 625 DFKNGSK|PN 0.061 . cgd6_1530 634 YDGVIIK|KK 0.068 . cgd6_1530 635 DGVIIKK|KD 0.082 . cgd6_1530 636 GVIIKKK|DV 0.179 . cgd6_1530 645 TLLQSLK|KR 0.056 . cgd6_1530 646 LLQSLKK|RF 0.083 . cgd6_1530 647 LQSLKKR|FE 0.240 . cgd6_1530 655 ELMNINK|MA 0.070 . cgd6_1530 669 DVLQSAK|DF 0.063 . cgd6_1530 677 FLNSLSR|NN 0.072 . cgd6_1530 682 SRNNLSK|NT 0.074 . cgd6_1530 687 SKNTLNK|DY 0.112 . cgd6_1530 699 LEPNCQK|LI 0.061 . cgd6_1530 706 LINVSYK|FC 0.091 . cgd6_1530 709 VSYKFCK|IK 0.070 . cgd6_1530 711 YKFCKIK|NL 0.077 . cgd6_1530 716 IKNLSER|LL 0.126 . cgd6_1530 723 LLEESYK|AI 0.073 . cgd6_1530 727 SYKAINK|KK 0.068 . cgd6_1530 728 YKAINKK|KR 0.112 . cgd6_1530 729 KAINKKK|RK 0.097 . cgd6_1530 730 AINKKKR|KQ 0.240 . cgd6_1530 731 INKKKRK|QI 0.159 . ____________________________^_________________

  • Fasta :-

    >cgd6_1530 GTGTAAATGTTAGTATCGTGAAATATAAAGGAAATAAATTCAAAAAAAAATTTCGATGAA TTCAAGGAGTATTTAATGTAAGCCTTATATCTATGCAAAAAGTCAAAAATGAAGCAAGAC AGGTCTATATCTTAGGTTGGCTGATCCACTTAAGAATTCTTAATCGAATTGTTGACAACA TTTTCATTAAATCTCACATTTTATCCCTGTACCTATATTATAATCAAGAATATGATACAC AAAAAAGTATTAGAGGAATATATCAGTGGTTTAGAAAGTATTTCAAAACATATTATTTAC CAAATGAATATTGGATTTACAAACTCCATAATTTTGAAGCGAAGACTAACAATGCGTTTT CGAAATCAAATTGGATGGGTGCATACTATTCTTTATTTTTAAATGAAGGTAAAGATTTTG CCCCATGCTTAAATGGAGTAATGTATAATACAATTGGAAGAGTCGAGAATAATTTTCTTG AAAAATTTCAGGAAATATACAGACAATTCGCACCTCTGATAGATCAACGTAGTTTCTTTC TTGGTAAAATTCTCGGAAGAATGATCAGTTCTATTTTATCTGGAAAATGTAGTGCTGAGG CCAGTAACATTCTTTTTGCTGCCCTGGTCCGATCGCTAGGTCATCATTGCCGCCTAACGT TATTTATTCCTCCTATTATTAACTTTAAAAAAAGTTGTGAATTGCAATGCAACGATAGGA GAGCTGAGCTTTGGGTTGAGGTCTTCGAACCAAAGTTCAACAAGTGGATTTCAGTCGATA TTCATCGTGGGGGGTGGAACTTCACAGGATGTTCTACAGTTCCGTTTGTAACTTATCCAG AAAAAAATATTTCTTCAATTGAACACAATAGCGATAAGGGATTGTTTTCAAAACTATTCT TAAGTGAATTTAATGATGACTCTGATGACTCAGACAAAAGCTTAAGTCTTAAAAAAATAA CACCCATATCAGTTATTCCCTTAAAAAAAACTGAAACTAGACAAAGATCAGTCAAATATG AAACGAGTAATATTGCTGAGCAAGATGAACAAAGAGAGTCCTTAGCATTTGAATTTTCAA ATAAAAAGAAAACAGAATCATTAACACTCACTCAATTACAGTGCAAAATCGATATCTCAA GGACAAATATTAAACATAAGATTAATGAGAGCATTGGATGGTGGATTATATCTGTTAATG AGTATGGGTATTTAAGAGAAACCACTGGAAGATATGTATCAGACTGGTCTCAAGTGTTTC AAGCTCAACAGAAGAATTCATTTAAACAAAAGGTTGAGTCAATAATATCAACAATAAATT CCACTTCCAATCAGTATAGCTCTAGGCTGCTTAAATTGGAATTATTAGATGATTTCGAAT TGGAAAAAATTATACACGAAAATGATGTAATTCCTATTTCAAAAACATCTTTCAAAAACC ATCCAAAATACGCCATTATTTCATGTCTTAATTCTTTAGAAATCATTCATCCAAAGGAGC CTATTGTTGGATATTTTCAGGGCGAGCCAATTTATCTTAGAGAAAATGTCCAAACGTTAA AGACTAGGACTCAGTGGGATCAAGAACAACGCGAAATTAAGATTGGTCAGCAACCAATAA AAATTATCTTCAAAAAGAAAAATGATGACGTTGACTTAAAGGGCAAAGTGAAGCTAGAAT ACTATGCAGAATTTCAGACGCAGATTAAACCTTTGGCGGAGTTGAACCACCTTGATCAAA TTCCAAAAGATCATTTTAAGTCAATAAATATTTCTATTAAAGGAAATATACCTAATTCAT GTGTTCATATAAAAGATTCTTGTGAGGGTCTTAATAACGATAAAGTTATGTTTACTTCCA GGTATTACTCTACGTGGAAAACTGAAAATATTGTTGATATAATTAAAAGAAGTAACATCG ACTACGCAAGAGCGTTTATTGGTCACGACTTTAAAAATGGGTCAAAACCTAATTACGATG GAGTAATTATTAAAAAAAAGGATGTTACTCTGTTGCAATCACTAAAAAAACGATTTGAAT TAATGAATATAAATAAAATGGCTAATTTCATCTGGAATGACGTTCTGCAAAGTGCTAAAG ATTTTTTGAATAGCCTCTCTCGGAATAATTTGTCAAAAAATACATTAAATAAAGACTACG ATCCTGGTTTAGAGCCCAATTGTCAAAAGCTAATTAATGTGAGTTACAAATTCTGCAAAA TAAAAAACTTATCAGAAAGATTATTAGAAGAAAGTTACAAAGCAATTAACAAAAAAAAGA GAAAACAAATCGATACATAA
  • Download Fasta

  • Fasta :-

    MQKVKNEARQVYILGWLIHLRILNRIVDNIFIKSHILSLYLYYNQEYDTQKSIRGIYQWF RKYFKTYYLPNEYWIYKLHNFEAKTNNAFSKSNWMGAYYSLFLNEGKDFAPCLNGVMYNT IGRVENNFLEKFQEIYRQFAPLIDQRSFFLGKILGRMISSILSGKCSAEASNILFAALVR SLGHHCRLTLFIPPIINFKKSCELQCNDRRAELWVEVFEPKFNKWISVDIHRGGWNFTGC STVPFVTYPEKNISSIEHNSDKGLFSKLFLSEFNDDSDDSDKSLSLKKITPISVIPLKKT ETRQRSVKYETSNIAEQDEQRESLAFEFSNKKKTESLTLTQLQCKIDISRTNIKHKINES IGWWIISVNEYGYLRETTGRYVSDWSQVFQAQQKNSFKQKVESIISTINSTSNQYSSRLL KLELLDDFELEKIIHENDVIPISKTSFKNHPKYAIISCLNSLEIIHPKEPIVGYFQGEPI YLRENVQTLKTRTQWDQEQREIKIGQQPIKIIFKKKNDDVDLKGKVKLEYYAEFQTQIKP LAELNHLDQIPKDHFKSINISIKGNIPNSCVHIKDSCEGLNNDKVMFTSRYYSTWKTENI VDIIKRSNIDYARAFIGHDFKNGSKPNYDGVIIKKKDVTLLQSLKKRFELMNINKMANFI WNDVLQSAKDFLNSLSRNNLSKNTLNKDYDPGLEPNCQKLINVSYKFCKIKNLSERLLEE SYKAINKKKRKQIDT

    No Results
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IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
cgd6_1530285 SDKSLSLKKI0.99unspcgd6_1530285 SDKSLSLKKI0.99unspcgd6_1530285 SDKSLSLKKI0.99unspcgd6_1530306 STRQRSVKYE0.996unspcgd6_1530446 SISKTSFKNH0.994unspcgd6_1530593 SSRYYSTWKT0.993unspcgd6_1530163 SSSILSGKCS0.991unspcgd6_1530280 SDSDDSDKSL0.995unsp

cgd6_1530      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India