cgd6_4350 | 26S proteasome subunit P45

_IDPredictionOTHERSPmTPCS_Position
cgd6_4350OTHER0.9998250.0001100.000065
No Results

  • Fasta :-

    >cgd6_4350 MAVKPQIKTEKDGGKEEEDQSRPLDQVDIDIMRKYGMGPYVSKIKQVETEVKDLMSAISK LNSIRESDTGLAPPSQWDLAADRQNMQMEQPLQVARCTKIIDAGTEEAKYMINIKQMAKY VVGLGDKVAPTDIEEGMRVGVDRTKYKIQIPLPPKIDPSVAMMTVEDKPDVTYNDIGGAK EQLERLREVVEMPLLHPERFVQLGIDPPKGVLLYGPPGTGKTLTARAVANRTDACFICVI GSELVQKYVGEGARMVRELFKLARSKKACILFIDEVDAIGGARGDESAHGDHEVQRTMLE IVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTQIFRIHAKV MSMERDIRFELLSRLCPNCTGADIRSVCTEAGMFAIRARRKSISEKDLLDAINKVVKGYK KFSATAKYMVYN
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/cgd6_4350.fa Sequence name : cgd6_4350 Sequence length : 432 VALUES OF COMPUTED PARAMETERS Coef20 : 2.304 CoefTot : -0.493 ChDiff : 2 ZoneTo : 9 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.406 1.247 0.094 0.444 MesoH : -0.901 0.331 -0.374 0.157 MuHd_075 : 7.174 7.117 2.219 1.749 MuHd_095 : 21.451 8.274 6.210 4.492 MuHd_100 : 22.587 9.801 7.399 4.916 MuHd_105 : 21.318 11.071 7.596 4.754 Hmax_075 : -13.533 -0.800 -5.622 0.460 Hmax_095 : -11.812 -3.413 -5.814 0.464 Hmax_100 : -10.400 -2.600 -4.686 1.130 Hmax_105 : -6.883 1.050 -3.351 2.310 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9963 0.0037 DFMC : 0.9951 0.0049
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 432 cgd6_4350 MAVKPQIKTEKDGGKEEEDQSRPLDQVDIDIMRKYGMGPYVSKIKQVETEVKDLMSAISKLNSIRESDTGLAPPSQWDLA 80 ADRQNMQMEQPLQVARCTKIIDAGTEEAKYMINIKQMAKYVVGLGDKVAPTDIEEGMRVGVDRTKYKIQIPLPPKIDPSV 160 AMMTVEDKPDVTYNDIGGAKEQLERLREVVEMPLLHPERFVQLGIDPPKGVLLYGPPGTGKTLTARAVANRTDACFICVI 240 GSELVQKYVGEGARMVRELFKLARSKKACILFIDEVDAIGGARGDESAHGDHEVQRTMLEIVNQLDGFDARGNIKVLMAT 320 NRPDTLDPALLRPGRLDRKVEFGLPDLEGRTQIFRIHAKVMSMERDIRFELLSRLCPNCTGADIRSVCTEAGMFAIRARR 400 KSISEKDLLDAINKVVKGYKKFSATAKYMVYN 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 .................P.............................................................. 400 ................................ 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ cgd6_4350 4 ---MAVK|PQ 0.062 . cgd6_4350 8 AVKPQIK|TE 0.066 . cgd6_4350 11 PQIKTEK|DG 0.097 . cgd6_4350 15 TEKDGGK|EE 0.066 . cgd6_4350 22 EEEDQSR|PL 0.109 . cgd6_4350 33 VDIDIMR|KY 0.094 . cgd6_4350 34 DIDIMRK|YG 0.067 . cgd6_4350 43 MGPYVSK|IK 0.062 . cgd6_4350 45 PYVSKIK|QV 0.090 . cgd6_4350 52 QVETEVK|DL 0.074 . cgd6_4350 60 LMSAISK|LN 0.070 . cgd6_4350 65 SKLNSIR|ES 0.124 . cgd6_4350 83 WDLAADR|QN 0.091 . cgd6_4350 96 QPLQVAR|CT 0.115 . cgd6_4350 99 QVARCTK|II 0.209 . cgd6_4350 109 AGTEEAK|YM 0.067 . cgd6_4350 115 KYMINIK|QM 0.065 . cgd6_4350 119 NIKQMAK|YV 0.079 . cgd6_4350 127 VVGLGDK|VA 0.055 . cgd6_4350 138 DIEEGMR|VG 0.064 . cgd6_4350 143 MRVGVDR|TK 0.126 . cgd6_4350 145 VGVDRTK|YK 0.066 . cgd6_4350 147 VDRTKYK|IQ 0.070 . cgd6_4350 155 QIPLPPK|ID 0.059 . cgd6_4350 168 MMTVEDK|PD 0.059 . cgd6_4350 180 NDIGGAK|EQ 0.058 . cgd6_4350 185 AKEQLER|LR 0.086 . cgd6_4350 187 EQLERLR|EV 0.088 . cgd6_4350 199 PLLHPER|FV 0.129 . cgd6_4350 209 LGIDPPK|GV 0.077 . cgd6_4350 221 GPPGTGK|TL 0.062 . cgd6_4350 226 GKTLTAR|AV 0.113 . cgd6_4350 231 ARAVANR|TD 0.087 . cgd6_4350 247 GSELVQK|YV 0.154 . cgd6_4350 254 YVGEGAR|MV 0.123 . cgd6_4350 257 EGARMVR|EL 0.245 . cgd6_4350 261 MVRELFK|LA 0.069 . cgd6_4350 264 ELFKLAR|SK 0.130 . cgd6_4350 266 FKLARSK|KA 0.068 . cgd6_4350 267 KLARSKK|AC 0.343 . cgd6_4350 283 DAIGGAR|GD 0.097 . cgd6_4350 296 GDHEVQR|TM 0.110 . cgd6_4350 311 LDGFDAR|GN 0.144 . cgd6_4350 315 DARGNIK|VL 0.059 . cgd6_4350 322 VLMATNR|PD 0.076 . cgd6_4350 332 LDPALLR|PG 0.069 . cgd6_4350 335 ALLRPGR|LD 0.253 . cgd6_4350 338 RPGRLDR|KV 0.591 *ProP* cgd6_4350 339 PGRLDRK|VE 0.066 . cgd6_4350 350 LPDLEGR|TQ 0.077 . cgd6_4350 355 GRTQIFR|IH 0.096 . cgd6_4350 359 IFRIHAK|VM 0.075 . cgd6_4350 365 KVMSMER|DI 0.107 . cgd6_4350 368 SMERDIR|FE 0.165 . cgd6_4350 374 RFELLSR|LC 0.063 . cgd6_4350 385 CTGADIR|SV 0.255 . cgd6_4350 397 AGMFAIR|AR 0.088 . cgd6_4350 399 MFAIRAR|RK 0.147 . cgd6_4350 400 FAIRARR|KS 0.309 . cgd6_4350 401 AIRARRK|SI 0.150 . cgd6_4350 406 RKSISEK|DL 0.114 . cgd6_4350 414 LLDAINK|VV 0.062 . cgd6_4350 417 AINKVVK|GY 0.070 . cgd6_4350 420 KVVKGYK|KF 0.065 . cgd6_4350 421 VVKGYKK|FS 0.103 . cgd6_4350 427 KFSATAK|YM 0.076 . ____________________________^_________________

  • Fasta :-

    >cgd6_4350 ATGGCAGTAAAGCCACAGATTAAAACAGAAAAAGATGGAGGAAAAGAAGAGGAAGACCAG TCTCGTCCTCTTGATCAAGTTGATATAGATATAATGAGAAAGTATGGAATGGGGCCATAT GTGTCAAAGATTAAACAGGTGGAAACCGAGGTCAAAGATTTAATGTCAGCTATTTCAAAG CTGAATAGTATAAGAGAGTCAGATACAGGTTTGGCTCCTCCATCTCAATGGGATCTGGCA GCTGATAGACAAAATATGCAAATGGAACAGCCCTTACAGGTCGCAAGATGCACAAAAATT ATAGATGCTGGTACAGAGGAAGCAAAATATATGATCAACATTAAACAAATGGCCAAGTAT GTAGTTGGACTAGGAGATAAAGTTGCTCCAACTGATATAGAAGAAGGAATGAGAGTAGGT GTTGATCGTACCAAGTATAAGATTCAGATACCTTTACCACCAAAAATAGACCCCTCAGTT GCAATGATGACTGTAGAAGATAAACCTGATGTTACTTATAATGACATTGGAGGAGCAAAA GAGCAGTTGGAACGTCTAAGAGAAGTTGTGGAAATGCCTTTATTACATCCTGAGAGATTC GTACAATTAGGTATTGACCCGCCAAAAGGAGTATTATTGTATGGCCCTCCTGGTACTGGA AAGACTCTAACAGCAAGAGCCGTAGCAAATAGAACAGATGCATGTTTCATATGTGTTATT GGCTCCGAGTTGGTACAGAAATATGTTGGAGAAGGAGCAAGAATGGTTAGAGAACTTTTT AAATTAGCTAGAAGTAAGAAAGCATGTATATTGTTTATAGATGAAGTAGATGCAATAGGA GGAGCAAGAGGTGATGAAAGTGCTCATGGAGATCATGAGGTTCAAAGAACTATGCTTGAA ATTGTGAATCAACTCGATGGATTTGATGCAAGAGGTAATATCAAGGTCCTTATGGCAACT AACAGGCCAGATACTTTGGATCCTGCTCTTCTTAGACCAGGAAGATTAGATAGAAAAGTT GAGTTCGGACTTCCAGATTTGGAAGGAAGAACCCAGATTTTTAGAATCCACGCTAAAGTA ATGAGTATGGAAAGAGATATCAGATTTGAGCTCCTTTCTAGACTTTGTCCAAACTGTACA GGTGCCGATATAAGATCAGTCTGTACTGAAGCTGGAATGTTTGCAATTAGAGCAAGAAGG AAAAGTATCAGTGAAAAAGATCTTTTGGATGCCATTAACAAAGTTGTTAAAGGTTACAAG AAGTTCTCTGCAACAGCAAAGTATATGGTTTACAATTAA
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  • Fasta :-

    MAVKPQIKTEKDGGKEEEDQSRPLDQVDIDIMRKYGMGPYVSKIKQVETEVKDLMSAISK LNSIRESDTGLAPPSQWDLAADRQNMQMEQPLQVARCTKIIDAGTEEAKYMINIKQMAKY VVGLGDKVAPTDIEEGMRVGVDRTKYKIQIPLPPKIDPSVAMMTVEDKPDVTYNDIGGAK EQLERLREVVEMPLLHPERFVQLGIDPPKGVLLYGPPGTGKTLTARAVANRTDACFICVI GSELVQKYVGEGARMVRELFKLARSKKACILFIDEVDAIGGARGDESAHGDHEVQRTMLE IVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTQIFRIHAKV MSMERDIRFELLSRLCPNCTGADIRSVCTEAGMFAIRARRKSISEKDLLDAINKVVKGYK KFSATAKYMVYN

  • title: ATP binding site
  • coordinates: P216,P217,G218,T219,G220,K221,T222,L223,D274,N321
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
cgd6_4350404 SRKSISEKDL0.998unspcgd6_4350404 SRKSISEKDL0.998unspcgd6_4350404 SRKSISEKDL0.998unspcgd6_435063 SSKLNSIRES0.997unspcgd6_4350402 SARRKSISEK0.998unsp

cgd6_4350      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India