cgd6_5510 | Metalloenzyme, LuxS/M16 peptidase-like

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0003824      GO:0046872      

  • Computed_GO_Functions:  catalytic activity      metal ion binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
cgd6_5510OTHER0.9702010.0017700.028029
No Results

  • Fasta :-

    >cgd6_5510 MMTFIFFSLKKSQFIYLYTKIIQILIKKQYNLVKSNDISRFTIDLNFFSIDTWAPLSLTI GIDSNSYNIADYELNKISKILNNLISTDEESFNDAIKEIKYEIISSQNNQIKNIYISLYN QLFYNQDQSNSKLLKSINELSYVDFIELVIFYFKKFNLKGVFVGNIHPINATRTLEHFLS DFLPEKEQESIFTYIWNIIKAIFTRRRWSSNSKSYSMYAKVISRIFDLDLLPDPLISEKY IQNDDDKLKNIQILDPLSLNNRSKFFIFMQRNSSFETINGVYLDVFIGNNSIKNQVNSQV LQSIICSQLDEVFYNENNIAYKVNFEINTHAESVVARINIQSREHIQILSENILQFWKSY FHPNSTYITPEIFEKSKKSVEAIYINFEFIKDIAYDFNYKILKKNISGHFNSWLSIEFLS FKKFMEWFEQIYFNSVLFLYAIQTNHHENKLDQIQKYLPFNFTRLDHTKKSLFEIEEIKT YSQLKFMKDE
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/cgd6_5510.fa Sequence name : cgd6_5510 Sequence length : 490 VALUES OF COMPUTED PARAMETERS Coef20 : 4.419 CoefTot : -1.058 ChDiff : -1 ZoneTo : 36 KR : 6 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.953 1.206 -0.034 0.552 MesoH : -0.643 0.302 -0.449 0.239 MuHd_075 : 18.616 18.154 7.531 5.353 MuHd_095 : 33.115 27.669 10.962 8.753 MuHd_100 : 35.768 25.068 11.674 8.508 MuHd_105 : 32.720 22.145 10.952 7.197 Hmax_075 : 14.000 17.733 3.536 6.790 Hmax_095 : 11.112 17.938 2.345 6.046 Hmax_100 : 9.600 16.000 1.709 5.510 Hmax_105 : 11.500 18.433 3.890 5.915 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.1116 0.8884 DFMC : 0.1990 0.8010 This protein is probably imported in chloroplast. f(Ser) = 0.0833 f(Arg) = 0.0000 CMi = 1.19048 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 490 cgd6_5510 MMTFIFFSLKKSQFIYLYTKIIQILIKKQYNLVKSNDISRFTIDLNFFSIDTWAPLSLTIGIDSNSYNIADYELNKISKI 80 LNNLISTDEESFNDAIKEIKYEIISSQNNQIKNIYISLYNQLFYNQDQSNSKLLKSINELSYVDFIELVIFYFKKFNLKG 160 VFVGNIHPINATRTLEHFLSDFLPEKEQESIFTYIWNIIKAIFTRRRWSSNSKSYSMYAKVISRIFDLDLLPDPLISEKY 240 IQNDDDKLKNIQILDPLSLNNRSKFFIFMQRNSSFETINGVYLDVFIGNNSIKNQVNSQVLQSIICSQLDEVFYNENNIA 320 YKVNFEINTHAESVVARINIQSREHIQILSENILQFWKSYFHPNSTYITPEIFEKSKKSVEAIYINFEFIKDIAYDFNYK 400 ILKKNISGHFNSWLSIEFLSFKKFMEWFEQIYFNSVLFLYAIQTNHHENKLDQIQKYLPFNFTRLDHTKKSLFEIEEIKT 480 YSQLKFMKDE 560 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 .......... 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ cgd6_5510 10 FIFFSLK|KS 0.058 . cgd6_5510 11 IFFSLKK|SQ 0.142 . cgd6_5510 20 FIYLYTK|II 0.059 . cgd6_5510 27 IIQILIK|KQ 0.062 . cgd6_5510 28 IQILIKK|QY 0.081 . cgd6_5510 34 KQYNLVK|SN 0.115 . cgd6_5510 40 KSNDISR|FT 0.115 . cgd6_5510 76 ADYELNK|IS 0.056 . cgd6_5510 79 ELNKISK|IL 0.069 . cgd6_5510 97 SFNDAIK|EI 0.070 . cgd6_5510 100 DAIKEIK|YE 0.060 . cgd6_5510 112 SQNNQIK|NI 0.093 . cgd6_5510 132 QDQSNSK|LL 0.061 . cgd6_5510 135 SNSKLLK|SI 0.091 . cgd6_5510 154 LVIFYFK|KF 0.057 . cgd6_5510 155 VIFYFKK|FN 0.121 . cgd6_5510 159 FKKFNLK|GV 0.086 . cgd6_5510 173 HPINATR|TL 0.115 . cgd6_5510 186 SDFLPEK|EQ 0.065 . cgd6_5510 200 YIWNIIK|AI 0.067 . cgd6_5510 205 IKAIFTR|RR 0.085 . cgd6_5510 206 KAIFTRR|RW 0.129 . cgd6_5510 207 AIFTRRR|WS 0.142 . cgd6_5510 213 RWSSNSK|SY 0.102 . cgd6_5510 220 SYSMYAK|VI 0.092 . cgd6_5510 224 YAKVISR|IF 0.074 . cgd6_5510 239 DPLISEK|YI 0.064 . cgd6_5510 247 IQNDDDK|LK 0.065 . cgd6_5510 249 NDDDKLK|NI 0.064 . cgd6_5510 262 PLSLNNR|SK 0.139 . cgd6_5510 264 SLNNRSK|FF 0.089 . cgd6_5510 271 FFIFMQR|NS 0.078 . cgd6_5510 293 IGNNSIK|NQ 0.067 . cgd6_5510 322 ENNIAYK|VN 0.072 . cgd6_5510 337 AESVVAR|IN 0.189 . cgd6_5510 343 RINIQSR|EH 0.113 . cgd6_5510 358 NILQFWK|SY 0.070 . cgd6_5510 375 TPEIFEK|SK 0.096 . cgd6_5510 377 EIFEKSK|KS 0.060 . cgd6_5510 378 IFEKSKK|SV 0.364 . cgd6_5510 391 INFEFIK|DI 0.075 . cgd6_5510 400 AYDFNYK|IL 0.060 . cgd6_5510 403 FNYKILK|KN 0.061 . cgd6_5510 404 NYKILKK|NI 0.125 . cgd6_5510 422 IEFLSFK|KF 0.062 . cgd6_5510 423 EFLSFKK|FM 0.092 . cgd6_5510 450 TNHHENK|LD 0.071 . cgd6_5510 456 KLDQIQK|YL 0.064 . cgd6_5510 464 LPFNFTR|LD 0.099 . cgd6_5510 469 TRLDHTK|KS 0.068 . cgd6_5510 470 RLDHTKK|SL 0.215 . cgd6_5510 479 FEIEEIK|TY 0.064 . cgd6_5510 485 KTYSQLK|FM 0.070 . cgd6_5510 488 SQLKFMK|DE 0.076 . ____________________________^_________________

  • Fasta :-

    >cgd6_5510 ATGATGACTTTCATTTTCTTTTCTCTAAAAAAATCACAGTTTATTTATCTTTACACTAAA ATTATTCAAATACTAATTAAAAAACAGTATAACCTGGTTAAATCAAATGATATAAGTCGT TTCACTATTGATCTTAATTTTTTTTCTATAGATACCTGGGCTCCACTCTCATTAACAATC GGAATTGACTCTAATTCATATAATATTGCAGATTATGAACTTAATAAAATTTCGAAAATC TTAAATAATCTTATATCAACGGATGAAGAGAGCTTTAATGATGCAATTAAAGAGATTAAA TATGAAATTATTTCTTCTCAAAATAATCAGATTAAAAATATTTATATTTCACTATATAAT CAACTTTTCTATAATCAAGACCAATCTAACTCAAAATTATTAAAATCAATCAATGAGTTA AGCTATGTTGATTTTATTGAATTAGTTATTTTTTATTTTAAAAAATTCAATCTTAAAGGT GTATTTGTAGGAAACATTCATCCTATTAATGCAACACGTACATTAGAACACTTTTTGTCA GACTTTCTACCAGAAAAAGAACAAGAAAGTATATTTACATACATATGGAACATTATTAAA GCCATATTTACTAGAAGAAGGTGGTCATCCAATAGTAAATCTTATTCAATGTACGCAAAA GTGATTAGTAGAATCTTTGATCTAGACTTGTTGCCAGATCCACTTATATCTGAAAAGTAT ATTCAAAATGATGATGATAAATTAAAAAATATACAGATTTTAGATCCACTTTCATTAAAT AATAGATCCAAATTTTTTATTTTTATGCAAAGAAATTCCTCATTTGAAACTATTAATGGA GTTTATCTTGATGTCTTCATTGGTAATAATAGCATTAAAAATCAAGTAAACTCACAAGTA TTACAATCTATTATTTGCTCTCAACTGGATGAAGTATTTTATAATGAAAATAATATCGCA TATAAAGTTAATTTTGAAATAAATACTCATGCAGAGTCAGTTGTAGCACGAATTAATATT CAATCGAGAGAACATATCCAAATATTGTCAGAAAATATTCTACAATTTTGGAAAAGTTAT TTTCATCCTAACTCTACTTATATTACTCCAGAAATTTTTGAAAAATCAAAAAAATCAGTA GAAGCTATTTATATTAATTTTGAATTTATTAAAGATATTGCTTATGATTTTAATTACAAA ATTCTTAAAAAAAATATTAGTGGGCATTTTAACAGCTGGCTTTCTATTGAATTCTTATCC TTTAAAAAATTTATGGAGTGGTTTGAACAAATTTATTTTAATTCTGTTTTATTCTTATAT GCAATACAAACAAATCATCACGAAAATAAACTTGATCAAATACAAAAATATCTTCCTTTT AACTTTACAAGGTTAGATCATACAAAAAAATCATTATTTGAAATAGAGGAAATAAAAACA TATAGCCAACTCAAATTCATGAAAGATGAGTAG
  • Download Fasta

  • Fasta :-

    MMTFIFFSLKKSQFIYLYTKIIQILIKKQYNLVKSNDISRFTIDLNFFSIDTWAPLSLTI GIDSNSYNIADYELNKISKILNNLISTDEESFNDAIKEIKYEIISSQNNQIKNIYISLYN QLFYNQDQSNSKLLKSINELSYVDFIELVIFYFKKFNLKGVFVGNIHPINATRTLEHFLS DFLPEKEQESIFTYIWNIIKAIFTRRRWSSNSKSYSMYAKVISRIFDLDLLPDPLISEKY IQNDDDKLKNIQILDPLSLNNRSKFFIFMQRNSSFETINGVYLDVFIGNNSIKNQVNSQV LQSIICSQLDEVFYNENNIAYKVNFEINTHAESVVARINIQSREHIQILSENILQFWKSY FHPNSTYITPEIFEKSKKSVEAIYINFEFIKDIAYDFNYKILKKNISGHFNSWLSIEFLS FKKFMEWFEQIYFNSVLFLYAIQTNHHENKLDQIQKYLPFNFTRLDHTKKSLFEIEEIKT YSQLKFMKDE

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
cgd6_5510379 SKSKKSVEAI0.995unspcgd6_5510379 SKSKKSVEAI0.995unspcgd6_5510379 SKSKKSVEAI0.995unspcgd6_5510209 SRRRWSSNSK0.993unspcgd6_5510273 SMQRNSSFET0.992unsp

cgd6_5510      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India