cgd6_840 | Peptidase A22B, signal peptide peptidase

  • Computed_GO_Component_IDs:  GO:0016021      

  • Computed_GO_Components:  integral component of membrane      

  • Computed_GO_Function_IDs:  GO:0004190      

  • Computed_GO_Functions:  aspartic-type endopeptidase activity      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
cgd6_840OTHER0.9990550.0008540.000090
No Results

  • Fasta :-

    >cgd6_840 MGQACCNKSLMAYCLSYLVLALAILITNFKPLPIIVQMLMYTSSIIYIGSYLSLSQTIID PKTGEKDRSTESLSRKDAMMFPVIGSVALFSLYLAYKFLPVYWVNLLLTSYLFIIGAVAL METILQFISIVIYKCDDICKDTKLIIVDTHFNFFGYFENPDDPRGHEIKITIHHLWSLAL SLALGIIWIITDSWIIHNLFAIAFCIQAISLISIGSFKIGAILLCGLFVYDIFWVFGTDV MVTVAKSFQGPAKLIFPVSFDPWKQSILGLGDIVIPGLFISLCLRFDLKDYTKKHNQSLY HLISSSLQTPTFCTVLVSYLLGLITTACVMLYFKAAQPALLYLVPFCLISMVLSVVYRNK SSDAWNYSEEADSDERINDSKESSEEDKSQSKTSTRKKSDVLKQKKDD
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/cgd6_840.fa Sequence name : cgd6_840 Sequence length : 408 VALUES OF COMPUTED PARAMETERS Coef20 : 4.261 CoefTot : -0.182 ChDiff : -1 ZoneTo : 59 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.171 2.529 0.524 0.832 MesoH : 1.312 1.658 0.147 0.661 MuHd_075 : 28.184 26.966 11.689 5.744 MuHd_095 : 16.320 16.827 5.584 4.020 MuHd_100 : 21.796 20.969 7.474 5.686 MuHd_105 : 24.023 23.706 8.132 6.761 Hmax_075 : 18.400 23.100 8.008 5.620 Hmax_095 : 14.963 24.500 4.646 5.513 Hmax_100 : 16.800 19.300 3.707 6.310 Hmax_105 : 19.800 23.200 4.755 7.550 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7088 0.2912 DFMC : 0.4952 0.5048 This protein is probably imported in chloroplast. f(Ser) = 0.1186 f(Arg) = 0.0000 CMi = 1.69492 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 408 cgd6_840 MGQACCNKSLMAYCLSYLVLALAILITNFKPLPIIVQMLMYTSSIIYIGSYLSLSQTIIDPKTGEKDRSTESLSRKDAMM 80 FPVIGSVALFSLYLAYKFLPVYWVNLLLTSYLFIIGAVALMETILQFISIVIYKCDDICKDTKLIIVDTHFNFFGYFENP 160 DDPRGHEIKITIHHLWSLALSLALGIIWIITDSWIIHNLFAIAFCIQAISLISIGSFKIGAILLCGLFVYDIFWVFGTDV 240 MVTVAKSFQGPAKLIFPVSFDPWKQSILGLGDIVIPGLFISLCLRFDLKDYTKKHNQSLYHLISSSLQTPTFCTVLVSYL 320 LGLITTACVMLYFKAAQPALLYLVPFCLISMVLSVVYRNKSSDAWNYSEEADSDERINDSKESSEEDKSQSKTSTRKKSD 400 VLKQKKDD 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ........ 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ cgd6_840 8 GQACCNK|SL 0.088 . cgd6_840 30 ILITNFK|PL 0.064 . cgd6_840 62 QTIIDPK|TG 0.064 . cgd6_840 66 DPKTGEK|DR 0.064 . cgd6_840 68 KTGEKDR|ST 0.133 . cgd6_840 75 STESLSR|KD 0.074 . cgd6_840 76 TESLSRK|DA 0.166 . cgd6_840 97 SLYLAYK|FL 0.064 . cgd6_840 134 ISIVIYK|CD 0.070 . cgd6_840 140 KCDDICK|DT 0.068 . cgd6_840 143 DICKDTK|LI 0.061 . cgd6_840 164 ENPDDPR|GH 0.098 . cgd6_840 169 PRGHEIK|IT 0.088 . cgd6_840 218 ISIGSFK|IG 0.064 . cgd6_840 246 VMVTVAK|SF 0.076 . cgd6_840 253 SFQGPAK|LI 0.081 . cgd6_840 264 VSFDPWK|QS 0.070 . cgd6_840 285 FISLCLR|FD 0.073 . cgd6_840 289 CLRFDLK|DY 0.076 . cgd6_840 293 DLKDYTK|KH 0.064 . cgd6_840 294 LKDYTKK|HN 0.092 . cgd6_840 334 CVMLYFK|AA 0.069 . cgd6_840 358 VLSVVYR|NK 0.101 . cgd6_840 360 SVVYRNK|SS 0.090 . cgd6_840 376 EADSDER|IN 0.078 . cgd6_840 381 ERINDSK|ES 0.072 . cgd6_840 388 ESSEEDK|SQ 0.092 . cgd6_840 392 EDKSQSK|TS 0.060 . cgd6_840 396 QSKTSTR|KK 0.144 . cgd6_840 397 SKTSTRK|KS 0.076 . cgd6_840 398 KTSTRKK|SD 0.165 . cgd6_840 403 KKSDVLK|QK 0.076 . cgd6_840 405 SDVLKQK|KD 0.069 . cgd6_840 406 DVLKQKK|DD 0.102 . ____________________________^_________________

  • Fasta :-

    >cgd6_840 TGATAATAAAAAAAAAAAAAGAAGTGGCCCCCTTCTAAAAATTAAAATAATATTAAGAAA ATAAGGAAAAAGACTGATTCTTTTTTCTTTTTTTTGAAGAGGAACTTTAGCCTTATTTCT TGTAACACTCTTCTAATTAATCCATTAAGGAACTGAATTGAGTCACACAAATACACATTG TAAACATAAAACGAGTTAATAATGGGTCAAGCCTGTTGTAATAAGAGTTTAATGGCATAT TGCCTGAGCTACTTAGTTTTAGCTCTTGCAATTCTTATCACAAACTTTAAGCCTCTTCCA ATTATAGTTCAGATGTTAATGTACACGTCATCAATTATTTATATTGGATCTTATTTATCT CTTTCTCAAACAATTATTGATCCTAAAACGGGAGAGAAGGATCGAAGCACAGAGTCGCTT TCCAGGAAAGATGCAATGATGTTCCCAGTCATTGGTTCTGTTGCCTTGTTTTCACTATAT TTGGCATATAAATTTCTCCCTGTTTACTGGGTAAATTTGCTCTTGACTTCATACTTATTC ATAATTGGTGCAGTTGCACTAATGGAGACCATTTTACAGTTCATATCAATTGTAATTTAT AAATGTGATGATATTTGTAAAGATACTAAATTGATAATTGTTGACACTCATTTTAACTTC TTTGGATACTTTGAGAATCCAGATGATCCAAGAGGCCACGAAATTAAGATAACTATTCAT CATTTGTGGTCACTTGCACTTAGTTTGGCCCTTGGAATCATTTGGATAATAACAGATTCG TGGATTATTCACAATCTCTTTGCAATTGCTTTCTGTATCCAAGCAATCTCTCTCATTTCC ATTGGAAGTTTCAAAATTGGAGCTATTTTATTGTGTGGATTATTTGTTTATGATATATTT TGGGTATTTGGAACAGACGTTATGGTAACAGTTGCAAAATCTTTCCAAGGACCAGCTAAA CTCATCTTTCCTGTTTCATTTGATCCATGGAAACAAAGTATATTGGGTCTCGGAGATATT GTAATTCCTGGACTTTTCATATCTCTATGTTTGAGATTTGATCTCAAAGATTACACAAAG AAACATAATCAGAGTCTTTACCATTTGATTTCCAGCTCCCTACAAACCCCCACATTTTGC ACAGTTTTAGTCTCATATCTACTTGGACTCATTACAACCGCCTGTGTTATGTTATACTTT AAAGCAGCTCAACCTGCATTACTTTACTTGGTTCCATTCTGTCTTATTAGTATGGTCTTG TCTGTAGTGTATAGAAACAAGTCTTCTGATGCTTGGAATTATTCTGAGGAAGCTGACTCT GATGAAAGAATTAACGACTCCAAAGAGAGCTCCGAGGAGGATAAGTCACAGAGTAAAACT TCAACTAGAAAAAAATCAGATGTATTAAAACAAAAAAAGGATGATTGATTCTAACTTCAT TTTTTTTTTTTCCTCCCTAATTTCAAGAAATATCCACAAATTCAATCTAATAATTAGACT AGGGAAGAGGAGGAAATGAAAG
  • Download Fasta

  • Fasta :-

    MGQACCNKSLMAYCLSYLVLALAILITNFKPLPIIVQMLMYTSSIIYIGSYLSLSQTIID PKTGEKDRSTESLSRKDAMMFPVIGSVALFSLYLAYKFLPVYWVNLLLTSYLFIIGAVAL METILQFISIVIYKCDDICKDTKLIIVDTHFNFFGYFENPDDPRGHEIKITIHHLWSLAL SLALGIIWIITDSWIIHNLFAIAFCIQAISLISIGSFKIGAILLCGLFVYDIFWVFGTDV MVTVAKSFQGPAKLIFPVSFDPWKQSILGLGDIVIPGLFISLCLRFDLKDYTKKHNQSLY HLISSSLQTPTFCTVLVSYLLGLITTACVMLYFKAAQPALLYLVPFCLISMVLSVVYRNK SSDAWNYSEEADSDERINDSKESSEEDKSQSKTSTRKKSDVLKQKKDD

    No Results
    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
cgd6_840373 SEEADSDERI0.993unspcgd6_840373 SEEADSDERI0.993unspcgd6_840373 SEEADSDERI0.993unspcgd6_840380 SRINDSKESS0.99unspcgd6_840383 SDSKESSEED0.997unspcgd6_840384 SSKESSEEDK0.998unspcgd6_840389 SEEDKSQSKT0.992unspcgd6_840394 SQSKTSTRKK0.993unspcgd6_84069 SEKDRSTESL0.994unspcgd6_84074 STESLSRKDA0.998unsp

cgd6_840      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India