cgd7_140 | SprT family metallopeptidase

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_IDPredictionOTHERSPmTPCS_Position
cgd7_140OTHER0.9645800.0030540.032366
No Results

  • Fasta :-

    >cgd7_140 MRPSLLLGSSVRRKNCIKNYLVSSDTEIEDENNNINTPVKNLTIKLKEEHYYSDNSNINE CSSRPSISLATSVRRKVYHIDSSEDSYTEDVNLSYLNSNPSTFTSDILENLHESPTQPCI HYKSEFEPNNNPSSNYSSIGSRRRNCIFSSEEEDIIPLSSRPSIKYQSSVRRKNNSRKIF TIIDSDSEDELSNNAASKRSSFCLGPELICEPNILNCTPEQHNIWRSFDSDLEIDETNVS IDTLQELEWKTAISSSDFEDEEVERKHLTGYQSEEIEYEDKTGEYQNTPRMDEKEVLPEK YSLFSDEDIEDQKSDLEEIKENVSSKDLNSNQVTNLTKEIPLKNKSEKFGAFIRQRSSIA KYWYQKFNKQVFHNRLPEEVPIKWTGRLQRTAAQTLFITNIDGSKRVVIKLSKYVLDCEF RLKKTLLHECCHVAQFLLDSCIRPPHGQIFMKWGKVATKVFPDLKVEIYHNYEIIYKYRY QCLRCFQMFGRQTKINDETKIVCSVCNGTVIFIGRGTLSNSRKEFQVKAQNPPNTQKSKS NPYSEFVKEKFAEFKKDIRDGRTPSRRAPSIMKEIAKLWKQKKSEDLIQDFEKLSINN
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/cgd7_140.fa Sequence name : cgd7_140 Sequence length : 598 VALUES OF COMPUTED PARAMETERS Coef20 : 4.421 CoefTot : 0.299 ChDiff : -3 ZoneTo : 24 KR : 5 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.806 1.324 0.269 0.421 MesoH : -1.134 0.189 -0.506 0.103 MuHd_075 : 31.152 29.332 11.026 8.222 MuHd_095 : 15.613 11.610 5.658 2.871 MuHd_100 : 10.985 14.234 4.358 4.143 MuHd_105 : 22.698 12.987 5.397 5.420 Hmax_075 : 7.500 19.512 2.922 4.104 Hmax_095 : -1.900 10.063 -0.262 2.292 Hmax_100 : -3.100 7.700 0.769 1.520 Hmax_105 : 0.700 5.133 0.094 1.860 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.3594 0.6406 DFMC : 0.4288 0.5712 This protein is probably imported in mitochondria. f(Ser) = 0.2083 f(Arg) = 0.1250 CMi = 0.85034 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 598 cgd7_140 MRPSLLLGSSVRRKNCIKNYLVSSDTEIEDENNNINTPVKNLTIKLKEEHYYSDNSNINECSSRPSISLATSVRRKVYHI 80 DSSEDSYTEDVNLSYLNSNPSTFTSDILENLHESPTQPCIHYKSEFEPNNNPSSNYSSIGSRRRNCIFSSEEEDIIPLSS 160 RPSIKYQSSVRRKNNSRKIFTIIDSDSEDELSNNAASKRSSFCLGPELICEPNILNCTPEQHNIWRSFDSDLEIDETNVS 240 IDTLQELEWKTAISSSDFEDEEVERKHLTGYQSEEIEYEDKTGEYQNTPRMDEKEVLPEKYSLFSDEDIEDQKSDLEEIK 320 ENVSSKDLNSNQVTNLTKEIPLKNKSEKFGAFIRQRSSIAKYWYQKFNKQVFHNRLPEEVPIKWTGRLQRTAAQTLFITN 400 IDGSKRVVIKLSKYVLDCEFRLKKTLLHECCHVAQFLLDSCIRPPHGQIFMKWGKVATKVFPDLKVEIYHNYEIIYKYRY 480 QCLRCFQMFGRQTKINDETKIVCSVCNGTVIFIGRGTLSNSRKEFQVKAQNPPNTQKSKSNPYSEFVKEKFAEFKKDIRD 560 GRTPSRRAPSIMKEIAKLWKQKKSEDLIQDFEKLSINN 640 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ...................................... 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ cgd7_140 2 -----MR|PS 0.077 . cgd7_140 12 LLGSSVR|RK 0.077 . cgd7_140 13 LGSSVRR|KN 0.157 . cgd7_140 14 GSSVRRK|NC 0.112 . cgd7_140 18 RRKNCIK|NY 0.065 . cgd7_140 40 NINTPVK|NL 0.073 . cgd7_140 45 VKNLTIK|LK 0.067 . cgd7_140 47 NLTIKLK|EE 0.061 . cgd7_140 64 INECSSR|PS 0.086 . cgd7_140 74 SLATSVR|RK 0.085 . cgd7_140 75 LATSVRR|KV 0.185 . cgd7_140 76 ATSVRRK|VY 0.088 . cgd7_140 123 QPCIHYK|SE 0.091 . cgd7_140 142 YSSIGSR|RR 0.091 . cgd7_140 143 SSIGSRR|RN 0.125 . cgd7_140 144 SIGSRRR|NC 0.113 . cgd7_140 161 IIPLSSR|PS 0.097 . cgd7_140 165 SSRPSIK|YQ 0.089 . cgd7_140 171 KYQSSVR|RK 0.080 . cgd7_140 172 YQSSVRR|KN 0.128 . cgd7_140 173 QSSVRRK|NN 0.159 . cgd7_140 177 RRKNNSR|KI 0.127 . cgd7_140 178 RKNNSRK|IF 0.115 . cgd7_140 198 SNNAASK|RS 0.075 . cgd7_140 199 NNAASKR|SS 0.416 . cgd7_140 226 EQHNIWR|SF 0.155 . cgd7_140 250 LQELEWK|TA 0.063 . cgd7_140 265 EDEEVER|KH 0.076 . cgd7_140 266 DEEVERK|HL 0.084 . cgd7_140 281 EIEYEDK|TG 0.058 . cgd7_140 290 EYQNTPR|MD 0.100 . cgd7_140 294 TPRMDEK|EV 0.088 . cgd7_140 300 KEVLPEK|YS 0.060 . cgd7_140 313 EDIEDQK|SD 0.066 . cgd7_140 320 SDLEEIK|EN 0.059 . cgd7_140 326 KENVSSK|DL 0.101 . cgd7_140 338 QVTNLTK|EI 0.061 . cgd7_140 343 TKEIPLK|NK 0.081 . cgd7_140 345 EIPLKNK|SE 0.068 . cgd7_140 348 LKNKSEK|FG 0.083 . cgd7_140 354 KFGAFIR|QR 0.087 . cgd7_140 356 GAFIRQR|SS 0.141 . cgd7_140 361 QRSSIAK|YW 0.118 . cgd7_140 366 AKYWYQK|FN 0.078 . cgd7_140 369 WYQKFNK|QV 0.086 . cgd7_140 375 KQVFHNR|LP 0.091 . cgd7_140 383 PEEVPIK|WT 0.081 . cgd7_140 387 PIKWTGR|LQ 0.090 . cgd7_140 390 WTGRLQR|TA 0.352 . cgd7_140 405 TNIDGSK|RV 0.066 . cgd7_140 406 NIDGSKR|VV 0.193 . cgd7_140 410 SKRVVIK|LS 0.079 . cgd7_140 413 VVIKLSK|YV 0.075 . cgd7_140 421 VLDCEFR|LK 0.076 . cgd7_140 423 DCEFRLK|KT 0.059 . cgd7_140 424 CEFRLKK|TL 0.218 . cgd7_140 443 LLDSCIR|PP 0.089 . cgd7_140 452 HGQIFMK|WG 0.074 . cgd7_140 455 IFMKWGK|VA 0.079 . cgd7_140 459 WGKVATK|VF 0.059 . cgd7_140 465 KVFPDLK|VE 0.053 . cgd7_140 477 NYEIIYK|YR 0.068 . cgd7_140 479 EIIYKYR|YQ 0.092 . cgd7_140 484 YRYQCLR|CF 0.095 . cgd7_140 491 CFQMFGR|QT 0.098 . cgd7_140 494 MFGRQTK|IN 0.125 . cgd7_140 500 KINDETK|IV 0.088 . cgd7_140 515 TVIFIGR|GT 0.086 . cgd7_140 522 GTLSNSR|KE 0.073 . cgd7_140 523 TLSNSRK|EF 0.113 . cgd7_140 528 RKEFQVK|AQ 0.072 . cgd7_140 537 NPPNTQK|SK 0.081 . cgd7_140 539 PNTQKSK|SN 0.089 . cgd7_140 548 PYSEFVK|EK 0.072 . cgd7_140 550 SEFVKEK|FA 0.104 . cgd7_140 555 EKFAEFK|KD 0.068 . cgd7_140 556 KFAEFKK|DI 0.202 . cgd7_140 559 EFKKDIR|DG 0.073 . cgd7_140 562 KDIRDGR|TP 0.224 . cgd7_140 566 DGRTPSR|RA 0.090 . cgd7_140 567 GRTPSRR|AP 0.168 . cgd7_140 573 RAPSIMK|EI 0.061 . cgd7_140 577 IMKEIAK|LW 0.066 . cgd7_140 580 EIAKLWK|QK 0.061 . cgd7_140 582 AKLWKQK|KS 0.080 . cgd7_140 583 KLWKQKK|SE 0.204 . cgd7_140 593 LIQDFEK|LS 0.064 . ____________________________^_________________

  • Fasta :-

    >cgd7_140 ATGCGTCCATCTCTACTTTTGGGGAGTTCTGTGAGAAGAAAAAATTGCATAAAAAACTAC TTGGTATCCTCAGATACTGAAATTGAAGATGAAAATAATAACATAAATACTCCTGTAAAA AATCTAACTATAAAGTTAAAAGAGGAGCACTATTATAGTGATAATTCAAACATTAATGAA TGCTCCTCAAGACCATCAATAAGCTTAGCAACATCTGTTAGAAGAAAAGTGTATCACATA GACTCCAGCGAAGATAGCTATACAGAAGACGTAAACTTAAGCTATTTAAACAGTAATCCA AGTACTTTTACATCTGATATACTGGAAAATCTCCATGAGTCCCCAACTCAGCCTTGTATT CACTATAAAAGTGAATTTGAGCCAAATAACAATCCCTCTTCTAATTACTCAAGTATTGGA AGTAGAAGGAGAAACTGTATATTTAGTAGCGAAGAAGAAGATATTATCCCGTTATCTTCG AGGCCTTCAATTAAATATCAGTCTTCAGTTAGAAGGAAAAACAATTCAAGAAAAATTTTT ACAATAATTGATTCAGATTCTGAAGATGAGTTAAGCAATAATGCAGCAAGCAAAAGATCG TCTTTTTGTCTAGGCCCAGAACTAATCTGTGAGCCAAATATTCTCAACTGTACACCAGAA CAACACAATATCTGGAGGTCATTTGACTCTGATTTAGAAATAGATGAAACAAATGTTTCT ATAGATACTCTACAAGAATTGGAGTGGAAAACAGCTATTTCATCTTCAGACTTTGAAGAT GAAGAAGTGGAAAGAAAACATCTGACTGGTTATCAGTCTGAGGAAATTGAATATGAAGAC AAAACTGGAGAATATCAAAATACTCCCAGAATGGATGAAAAAGAAGTATTACCAGAAAAA TATAGTTTATTTAGTGATGAAGATATAGAAGATCAAAAGTCTGATTTGGAGGAGATCAAG GAAAATGTTAGCTCAAAAGATCTGAACTCTAATCAAGTGACAAACTTGACAAAAGAAATC CCCTTGAAAAATAAATCCGAAAAATTTGGAGCATTCATAAGACAAAGATCATCAATTGCA AAATATTGGTACCAAAAGTTTAATAAGCAAGTTTTCCATAATAGGCTTCCAGAGGAAGTT CCAATTAAATGGACAGGAAGGCTTCAAAGAACAGCAGCTCAAACACTTTTTATTACTAAT ATAGATGGTTCTAAAAGAGTGGTAATTAAGCTTTCAAAGTATGTTTTGGATTGTGAATTC AGATTAAAGAAAACACTGTTACATGAATGTTGTCATGTAGCTCAATTTTTATTAGATTCT TGTATTAGGCCTCCTCATGGACAAATATTTATGAAATGGGGAAAAGTAGCTACAAAAGTG TTTCCTGACTTAAAAGTTGAAATATACCATAATTATGAAATAATATACAAATACAGATAT CAATGTTTAAGATGTTTTCAGATGTTTGGAAGACAAACCAAAATAAATGATGAAACCAAG ATTGTTTGTTCAGTCTGTAATGGTACAGTAATATTTATTGGAAGAGGAACTTTAAGCAAT AGTAGGAAGGAATTTCAAGTAAAAGCACAGAACCCTCCAAATACACAGAAGAGTAAATCC AACCCTTACTCTGAGTTTGTAAAGGAGAAGTTTGCAGAGTTCAAGAAGGATATTAGGGAT GGCAGAACCCCCTCCAGAAGAGCTCCAAGCATAATGAAAGAAATTGCAAAGCTTTGGAAA CAAAAAAAGTCTGAAGATTTGATTCAAGACTTCGAAAAGCTTTCCATAAACAATTAG
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  • Fasta :-

    MRPSLLLGSSVRRKNCIKNYLVSSDTEIEDENNNINTPVKNLTIKLKEEHYYSDNSNINE CSSRPSISLATSVRRKVYHIDSSEDSYTEDVNLSYLNSNPSTFTSDILENLHESPTQPCI HYKSEFEPNNNPSSNYSSIGSRRRNCIFSSEEEDIIPLSSRPSIKYQSSVRRKNNSRKIF TIIDSDSEDELSNNAASKRSSFCLGPELICEPNILNCTPEQHNIWRSFDSDLEIDETNVS IDTLQELEWKTAISSSDFEDEEVERKHLTGYQSEEIEYEDKTGEYQNTPRMDEKEVLPEK YSLFSDEDIEDQKSDLEEIKENVSSKDLNSNQVTNLTKEIPLKNKSEKFGAFIRQRSSIA KYWYQKFNKQVFHNRLPEEVPIKWTGRLQRTAAQTLFITNIDGSKRVVIKLSKYVLDCEF RLKKTLLHECCHVAQFLLDSCIRPPHGQIFMKWGKVATKVFPDLKVEIYHNYEIIYKYRY QCLRCFQMFGRQTKINDETKIVCSVCNGTVIFIGRGTLSNSRKEFQVKAQNPPNTQKSKS NPYSEFVKEKFAEFKKDIRDGRTPSRRAPSIMKEIAKLWKQKKSEDLIQDFEKLSINN

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IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
cgd7_14086 SSSEDSYTED0.997unspcgd7_14086 SSSEDSYTED0.997unspcgd7_14086 SSSEDSYTED0.997unspcgd7_140149 SNCIFSSEEE0.995unspcgd7_140163 SSSRPSIKYQ0.995unspcgd7_140187 SIDSDSEDEL0.994unspcgd7_140305 SYSLFSDEDI0.998unspcgd7_140324 SKENVSSKDL0.997unspcgd7_140521 STLSNSRKEF0.993unspcgd7_14072 SSLATSVRRK0.994unspcgd7_14082 SYHIDSSEDS0.995unsp

cgd7_140      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India