cgd7_3020 | Rhomboid-like protein

  • Computed_GO_Component_IDs:  GO:0016021      

  • Computed_GO_Components:  integral component of membrane      

  • Computed_GO_Function_IDs:  GO:0004252      

  • Computed_GO_Functions:  serine-type endopeptidase activity      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
cgd7_3020OTHER0.9999890.0000070.000004
No Results

  • Fasta :-

    >cgd7_3020 MSDRKIFDIQSLNSHTELMNQQMPLSEDSSVVLSKEGNSKELDITTESFKFDESDSSKNH VVQPKSEENIEGKSSLKNGRTIEIKRGKHTPRNSLFLTMFCCIGGDSSVARLKVSYLATT FFASSIIFVFIQELVISQLTNGYSIIKIPDGYLFGPPPQVVFDMGALDTNLVRNGQLARL FWSFWLHTGFIHLFINLSCQIILGIILETRWVIWRYAILYLLGGISGNLASAVLDPCTIS AGSSACFFALLAGIIVLLLENWRNSRWQFLYVLLVIIASLIGISLSFMSNTDNWAHIGGF VAGLLWSFASMESFSRKSKALRKSIKSSGKNTIQLPSQDNVQLSLQIKPTDVEVGHSKSQ FEETSIVDSISDNEAKNEYVKGRFIPANCACSGGVQTVRVISLLLLLSLLTIGFLFLLYK PLYTKFNLVLGHLSFSGIQKCSCCDSPEGVFWCSSSPTWIRRCG
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/cgd7_3020.fa Sequence name : cgd7_3020 Sequence length : 464 VALUES OF COMPUTED PARAMETERS Coef20 : 3.859 CoefTot : 0.112 ChDiff : 4 ZoneTo : 2 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.482 2.747 0.539 0.912 MesoH : 1.008 1.459 0.139 0.560 MuHd_075 : 29.689 8.945 5.415 4.411 MuHd_095 : 9.906 4.102 2.389 2.484 MuHd_100 : 7.024 4.390 1.735 1.851 MuHd_105 : 14.398 9.440 3.700 3.247 Hmax_075 : 6.300 6.300 -0.530 2.791 Hmax_095 : -1.662 1.488 -2.146 1.234 Hmax_100 : -2.500 3.900 -2.621 1.390 Hmax_105 : 7.000 9.100 0.438 3.372 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9565 0.0435 DFMC : 0.9462 0.0538
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 464 cgd7_3020 MSDRKIFDIQSLNSHTELMNQQMPLSEDSSVVLSKEGNSKELDITTESFKFDESDSSKNHVVQPKSEENIEGKSSLKNGR 80 TIEIKRGKHTPRNSLFLTMFCCIGGDSSVARLKVSYLATTFFASSIIFVFIQELVISQLTNGYSIIKIPDGYLFGPPPQV 160 VFDMGALDTNLVRNGQLARLFWSFWLHTGFIHLFINLSCQIILGIILETRWVIWRYAILYLLGGISGNLASAVLDPCTIS 240 AGSSACFFALLAGIIVLLLENWRNSRWQFLYVLLVIIASLIGISLSFMSNTDNWAHIGGFVAGLLWSFASMESFSRKSKA 320 LRKSIKSSGKNTIQLPSQDNVQLSLQIKPTDVEVGHSKSQFEETSIVDSISDNEAKNEYVKGRFIPANCACSGGVQTVRV 400 ISLLLLLSLLTIGFLFLLYKPLYTKFNLVLGHLSFSGIQKCSCCDSPEGVFWCSSSPTWIRRCG 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................ 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ cgd7_3020 4 ---MSDR|KI 0.113 . cgd7_3020 5 --MSDRK|IF 0.081 . cgd7_3020 35 SSVVLSK|EG 0.070 . cgd7_3020 40 SKEGNSK|EL 0.070 . cgd7_3020 50 ITTESFK|FD 0.059 . cgd7_3020 58 DESDSSK|NH 0.066 . cgd7_3020 65 NHVVQPK|SE 0.106 . cgd7_3020 73 EENIEGK|SS 0.097 . cgd7_3020 77 EGKSSLK|NG 0.059 . cgd7_3020 80 SSLKNGR|TI 0.117 . cgd7_3020 85 GRTIEIK|RG 0.060 . cgd7_3020 86 RTIEIKR|GK 0.190 . cgd7_3020 88 IEIKRGK|HT 0.064 . cgd7_3020 92 RGKHTPR|NS 0.086 . cgd7_3020 111 GDSSVAR|LK 0.134 . cgd7_3020 113 SSVARLK|VS 0.061 . cgd7_3020 147 NGYSIIK|IP 0.062 . cgd7_3020 173 LDTNLVR|NG 0.068 . cgd7_3020 179 RNGQLAR|LF 0.081 . cgd7_3020 210 GIILETR|WV 0.102 . cgd7_3020 215 TRWVIWR|YA 0.139 . cgd7_3020 263 LLLENWR|NS 0.075 . cgd7_3020 266 ENWRNSR|WQ 0.147 . cgd7_3020 316 SMESFSR|KS 0.081 . cgd7_3020 317 MESFSRK|SK 0.122 . cgd7_3020 319 SFSRKSK|AL 0.274 . cgd7_3020 322 RKSKALR|KS 0.110 . cgd7_3020 323 KSKALRK|SI 0.147 . cgd7_3020 326 ALRKSIK|SS 0.138 . cgd7_3020 330 SIKSSGK|NT 0.073 . cgd7_3020 348 QLSLQIK|PT 0.086 . cgd7_3020 358 VEVGHSK|SQ 0.080 . cgd7_3020 376 ISDNEAK|NE 0.066 . cgd7_3020 381 AKNEYVK|GR 0.061 . cgd7_3020 383 NEYVKGR|FI 0.148 . cgd7_3020 399 GGVQTVR|VI 0.084 . cgd7_3020 420 FLFLLYK|PL 0.069 . cgd7_3020 425 YKPLYTK|FN 0.059 . cgd7_3020 440 SFSGIQK|CS 0.064 . cgd7_3020 461 SSPTWIR|RC 0.097 . cgd7_3020 462 SPTWIRR|CG 0.144 . ____________________________^_________________

  • Fasta :-

    >cgd7_3020 ATGTCTGACAGAAAGATTTTTGATATTCAGTCTTTAAATAGTCATACAGAGTTAATGAAT CAACAGATGCCCTTAAGTGAAGATAGTTCGGTAGTGCTATCTAAAGAAGGTAATAGTAAG GAGTTGGATATAACCACAGAATCATTTAAATTTGATGAAAGTGATAGTTCCAAAAATCAT GTTGTACAACCAAAATCAGAAGAAAATATTGAAGGTAAAAGTTCACTAAAAAATGGAAGA ACGATTGAAATTAAACGTGGCAAACACACACCTAGGAATTCACTCTTTCTAACGATGTTT TGTTGTATTGGCGGTGACTCAAGTGTAGCAAGGCTTAAGGTTTCATATTTGGCTACAACC TTTTTTGCATCTAGTATTATTTTTGTTTTTATACAAGAGCTAGTAATTAGCCAGCTTACG AACGGTTATTCTATTATAAAAATACCTGATGGATATTTGTTTGGACCTCCTCCTCAGGTA GTTTTTGATATGGGAGCATTAGATACGAATCTCGTTAGAAATGGGCAGTTGGCTCGACTC TTTTGGTCATTTTGGCTTCACACTGGATTTATCCATCTCTTCATTAATCTTTCATGTCAA ATAATACTTGGCATTATTCTAGAGACTCGCTGGGTTATATGGAGATATGCGATACTTTAC TTATTGGGTGGTATTTCTGGTAATTTAGCCTCTGCAGTCTTGGATCCGTGCACAATCTCT GCCGGCTCATCAGCTTGCTTCTTTGCGCTTTTGGCAGGGATTATTGTATTACTATTAGAA AATTGGAGAAATTCTCGGTGGCAATTTTTATACGTTCTATTAGTTATTATTGCCTCTTTA ATAGGGATTTCCTTAAGTTTCATGTCAAACACAGATAATTGGGCCCATATCGGTGGATTT GTTGCAGGATTATTATGGTCCTTTGCAAGCATGGAGTCATTTTCAAGAAAATCCAAAGCT TTACGTAAATCAATAAAATCTTCAGGAAAAAATACGATTCAATTGCCAAGTCAAGATAAT GTTCAGCTTTCACTTCAAATTAAGCCAACTGATGTTGAAGTCGGTCATTCCAAAAGCCAG TTTGAAGAAACTTCAATAGTAGATTCTATTTCTGATAACGAAGCTAAAAATGAATATGTT AAAGGACGCTTTATCCCAGCAAATTGCGCATGCAGCGGCGGTGTTCAAACTGTCAGGGTT ATCTCTTTACTGTTATTATTATCGTTACTAACTATTGGGTTTTTGTTTTTGTTATATAAG CCATTGTACACTAAGTTCAATTTGGTTTTAGGCCATCTCTCATTCTCAGGCATACAAAAA TGCAGTTGCTGCGATTCGCCCGAAGGCGTATTCTGGTGCTCGAGTTCCCCAACATGGATT AGAAGATGTGGATAA
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  • Fasta :-

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IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
cgd7_302075 SEGKSSLKNG0.997unspcgd7_302075 SEGKSSLKNG0.997unspcgd7_302075 SEGKSSLKNG0.997unspcgd7_3020324 SALRKSIKSS0.997unspcgd7_3020328 SSIKSSGKNT0.996unspcgd7_3020369 SSIVDSISDN0.997unspcgd7_302056 SDESDSSKNH0.996unspcgd7_302066 SVQPKSEENI0.992unsp

cgd7_3020      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India