cgd7_370 | PhoPQ-activated pathogenicity-related protein

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_IDPredictionOTHERSPmTPCS_Position
cgd7_370OTHER0.9853480.0002250.014428
No Results

  • Fasta :-

    >cgd7_370 MASILSSFSSQYNELWKAIIRPPRDRYSIRDLGPMRFAIGKSIFKRSDFTLRNRRFQALH CSHFEPIDNERQSESLPCVIYLHGNCSSRREALPYIPLLLPIGITVMAVDLSGSGLSDGD YISLGYHEKDDLSVLVEYLRNSKRCSSVGVWGRSMGAATALMYSGVDKGDGFLKGIVIDS SFCSLRQLCHELVHHYIPLLPNFLVDSALSFIKSTINDKAKVNIDDIAPIKSVGQCKVPA LFISGTNDTLVNPNHSKTLHDNYAGEKMLMIIPGNHNSERPKFVKASIVIFFYTVFDCFN IPKSADALRSFINTDLNLLFNYDGLYCDENGRIPKPITQSFYAIQQYIRHKTTNNVSAPI NNGLQKKNLGFSKEHLRREDMIRSSSNESFNDQSQGKGIQMRPPDVDKYIDRMIPLSSEN IKQSSSTIYSTGASCSRSTTFETISQGFERGDTMNTVSSFEEFKDTFSPVTQPNRPSGAE SGIEERVVGAEFGSDHLEGIVHYQISPPPGMKHANNNNSDNQQQYFNQNQNIHQHSPSYH PYGLNQKGVTYTNGAISNGANSLLLSTGGLAPSTIGMSSVQHQAPTGEGVKKPSIASSLP KRVANYNYPGN
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/cgd7_370.fa Sequence name : cgd7_370 Sequence length : 611 VALUES OF COMPUTED PARAMETERS Coef20 : 4.435 CoefTot : 0.377 ChDiff : 4 ZoneTo : 13 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.859 1.976 0.329 0.771 MesoH : -0.224 0.513 -0.254 0.264 MuHd_075 : 10.964 10.518 3.793 2.198 MuHd_095 : 22.032 15.103 5.681 6.006 MuHd_100 : 26.873 20.849 6.936 7.393 MuHd_105 : 25.682 21.772 7.037 7.152 Hmax_075 : 7.117 8.167 -0.540 2.917 Hmax_095 : 17.000 14.600 1.519 6.510 Hmax_100 : 17.000 14.600 1.519 6.510 Hmax_105 : 14.200 12.000 1.571 4.910 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7983 0.2017 DFMC : 0.8631 0.1369
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 611 cgd7_370 MASILSSFSSQYNELWKAIIRPPRDRYSIRDLGPMRFAIGKSIFKRSDFTLRNRRFQALHCSHFEPIDNERQSESLPCVI 80 YLHGNCSSRREALPYIPLLLPIGITVMAVDLSGSGLSDGDYISLGYHEKDDLSVLVEYLRNSKRCSSVGVWGRSMGAATA 160 LMYSGVDKGDGFLKGIVIDSSFCSLRQLCHELVHHYIPLLPNFLVDSALSFIKSTINDKAKVNIDDIAPIKSVGQCKVPA 240 LFISGTNDTLVNPNHSKTLHDNYAGEKMLMIIPGNHNSERPKFVKASIVIFFYTVFDCFNIPKSADALRSFINTDLNLLF 320 NYDGLYCDENGRIPKPITQSFYAIQQYIRHKTTNNVSAPINNGLQKKNLGFSKEHLRREDMIRSSSNESFNDQSQGKGIQ 400 MRPPDVDKYIDRMIPLSSENIKQSSSTIYSTGASCSRSTTFETISQGFERGDTMNTVSSFEEFKDTFSPVTQPNRPSGAE 480 SGIEERVVGAEFGSDHLEGIVHYQISPPPGMKHANNNNSDNQQQYFNQNQNIHQHSPSYHPYGLNQKGVTYTNGAISNGA 560 NSLLLSTGGLAPSTIGMSSVQHQAPTGEGVKKPSIASSLPKRVANYNYPGN 640 .............................................P.................................. 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................... 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ cgd7_370 17 QYNELWK|AI 0.066 . cgd7_370 21 LWKAIIR|PP 0.072 . cgd7_370 24 AIIRPPR|DR 0.304 . cgd7_370 26 IRPPRDR|YS 0.105 . cgd7_370 30 RDRYSIR|DL 0.245 . cgd7_370 36 RDLGPMR|FA 0.094 . cgd7_370 41 MRFAIGK|SI 0.093 . cgd7_370 45 IGKSIFK|RS 0.056 . cgd7_370 46 GKSIFKR|SD 0.511 *ProP* cgd7_370 52 RSDFTLR|NR 0.073 . cgd7_370 54 DFTLRNR|RF 0.067 . cgd7_370 55 FTLRNRR|FQ 0.227 . cgd7_370 71 EPIDNER|QS 0.086 . cgd7_370 89 HGNCSSR|RE 0.066 . cgd7_370 90 GNCSSRR|EA 0.180 . cgd7_370 129 SLGYHEK|DD 0.073 . cgd7_370 140 VLVEYLR|NS 0.064 . cgd7_370 143 EYLRNSK|RC 0.089 . cgd7_370 144 YLRNSKR|CS 0.303 . cgd7_370 153 SVGVWGR|SM 0.232 . cgd7_370 168 MYSGVDK|GD 0.079 . cgd7_370 174 KGDGFLK|GI 0.059 . cgd7_370 186 SSFCSLR|QL 0.127 . cgd7_370 213 SALSFIK|ST 0.073 . cgd7_370 219 KSTINDK|AK 0.058 . cgd7_370 221 TINDKAK|VN 0.078 . cgd7_370 231 DDIAPIK|SV 0.110 . cgd7_370 237 KSVGQCK|VP 0.059 . cgd7_370 257 VNPNHSK|TL 0.069 . cgd7_370 267 DNYAGEK|ML 0.065 . cgd7_370 280 GNHNSER|PK 0.111 . cgd7_370 282 HNSERPK|FV 0.141 . cgd7_370 285 ERPKFVK|AS 0.075 . cgd7_370 303 DCFNIPK|SA 0.098 . cgd7_370 309 KSADALR|SF 0.119 . cgd7_370 332 YCDENGR|IP 0.071 . cgd7_370 335 ENGRIPK|PI 0.206 . cgd7_370 349 AIQQYIR|HK 0.083 . cgd7_370 351 QQYIRHK|TT 0.065 . cgd7_370 366 INNGLQK|KN 0.061 . cgd7_370 367 NNGLQKK|NL 0.135 . cgd7_370 373 KNLGFSK|EH 0.065 . cgd7_370 377 FSKEHLR|RE 0.086 . cgd7_370 378 SKEHLRR|ED 0.117 . cgd7_370 383 RREDMIR|SS 0.150 . cgd7_370 397 NDQSQGK|GI 0.076 . cgd7_370 402 GKGIQMR|PP 0.093 . cgd7_370 408 RPPDVDK|YI 0.083 . cgd7_370 412 VDKYIDR|MI 0.081 . cgd7_370 422 LSSENIK|QS 0.084 . cgd7_370 437 TGASCSR|ST 0.129 . cgd7_370 450 ISQGFER|GD 0.115 . cgd7_370 464 SSFEEFK|DT 0.076 . cgd7_370 475 PVTQPNR|PS 0.088 . cgd7_370 486 ESGIEER|VV 0.157 . cgd7_370 512 SPPPGMK|HA 0.068 . cgd7_370 547 PYGLNQK|GV 0.070 . cgd7_370 591 PTGEGVK|KP 0.054 . cgd7_370 592 TGEGVKK|PS 0.101 . cgd7_370 601 IASSLPK|RV 0.079 . cgd7_370 602 ASSLPKR|VA 0.256 . ____________________________^_________________

  • Fasta :-

    >cgd7_370 ATTTAAATAAAATATCATATTTTCGTTTATTAAGGGCGATCTCTATAGTTTTTTAAATAC AGATATTGGGGGAAATACTCATTCGGAGATTCCCGTTAACAGTTAAAATATTTCGATATA TACTAACTATTACAGGCTTTAAATCATATTCACTTGTCAAAGCCGCAAGAATATAGAGAA ATGGCATCAATATTATCAAGTTTCTCCTCTCAATATAATGAACTATGGAAAGCAATCATA AGACCTCCAAGAGACAGATATAGTATTCGTGATTTAGGCCCAATGCGTTTTGCAATTGGA AAGTCAATATTTAAGAGATCAGACTTCACTCTAAGAAATCGTCGCTTCCAAGCTCTTCAT TGCAGTCATTTTGAGCCTATTGATAATGAAAGGCAATCTGAGTCTCTTCCTTGCGTAATT TACCTTCACGGAAATTGCAGTTCAAGGAGAGAGGCTCTTCCATATATTCCGTTACTTCTT CCAATCGGAATTACTGTTATGGCTGTCGATTTGAGTGGTTCTGGTCTCTCTGATGGAGAT TATATAAGTTTGGGATACCACGAAAAAGATGATCTTTCAGTCTTGGTTGAATACTTAAGA AATTCAAAACGATGTAGCTCTGTTGGGGTTTGGGGGAGGTCCATGGGAGCTGCTACTGCA TTAATGTACTCAGGAGTTGATAAGGGTGATGGATTCTTAAAAGGGATTGTCATCGATTCA AGCTTTTGCAGTCTTCGCCAGTTATGCCATGAGTTGGTTCATCATTATATCCCATTATTA CCCAATTTTCTTGTTGATTCTGCACTTTCATTTATCAAATCTACAATTAATGATAAAGCA AAGGTTAATATTGACGATATTGCTCCAATTAAGTCTGTTGGTCAATGCAAGGTCCCTGCT TTGTTTATTTCTGGAACTAATGATACATTGGTTAATCCAAATCATTCAAAAACTTTACAT GATAACTATGCTGGAGAGAAGATGCTTATGATCATCCCCGGTAATCACAATTCTGAGAGA CCCAAGTTTGTTAAGGCATCGATCGTCATTTTCTTTTATACAGTATTTGATTGCTTCAAT ATTCCAAAATCTGCAGATGCTTTGAGGTCTTTTATAAATACGGACTTGAACCTTCTATTC AACTATGATGGACTGTATTGCGATGAAAATGGTAGAATTCCAAAGCCAATCACTCAATCT TTTTATGCTATTCAGCAATACATAAGGCACAAAACTACTAACAATGTCTCTGCTCCTATT AATAATGGATTACAAAAGAAGAATCTTGGATTTAGTAAGGAACATCTGAGAAGAGAAGAC ATGATTAGATCGAGTTCGAATGAATCTTTCAATGACCAAAGTCAAGGCAAAGGAATCCAA ATGCGTCCTCCAGATGTTGACAAATACATTGATCGTATGATTCCTTTAAGCAGTGAAAAT ATTAAGCAATCTTCATCTACAATATATTCTACTGGTGCTTCATGCTCCAGAAGTACTACT TTTGAGACTATTAGCCAGGGGTTTGAGAGGGGTGACACAATGAATACTGTAAGTTCTTTT GAGGAATTTAAAGATACTTTTAGCCCTGTAACACAGCCAAATAGGCCATCAGGTGCAGAA AGCGGTATTGAAGAGAGGGTAGTTGGGGCTGAATTTGGGTCAGACCATTTAGAAGGAATA GTTCATTATCAAATCTCTCCTCCACCTGGAATGAAGCATGCTAACAATAATAATAGTGAT AATCAACAACAGTATTTTAACCAGAATCAAAATATTCATCAACATTCTCCTTCGTACCAC CCGTATGGTCTTAACCAGAAGGGGGTTACTTATACTAATGGTGCCATAAGTAATGGAGCT AATAGTTTATTGCTTTCTACTGGAGGACTTGCTCCTTCAACTATAGGTATGAGCTCAGTT CAGCATCAGGCGCCAACAGGAGAGGGAGTCAAAAAACCAAGTATTGCTTCAAGTTTACCA AAAAGGGTAGCTAATTATAACTACCCTGGGAATTAACTTAACTTAATTAGAGTTTTTCTT AACTTTTTTTTGATGTTCTTGCGATTAGACTTCAAATGGGTTTTTGAAAATTATTCAAAG CTATTGAAATTGGGGTCTAATTGGCAACTTTCTAAGCGTTAATTATATGGATAGTTGTTT CAATACTATTAATAGCGAGATGAG
  • Download Fasta

  • Fasta :-

    MASILSSFSSQYNELWKAIIRPPRDRYSIRDLGPMRFAIGKSIFKRSDFTLRNRRFQALH CSHFEPIDNERQSESLPCVIYLHGNCSSRREALPYIPLLLPIGITVMAVDLSGSGLSDGD YISLGYHEKDDLSVLVEYLRNSKRCSSVGVWGRSMGAATALMYSGVDKGDGFLKGIVIDS SFCSLRQLCHELVHHYIPLLPNFLVDSALSFIKSTINDKAKVNIDDIAPIKSVGQCKVPA LFISGTNDTLVNPNHSKTLHDNYAGEKMLMIIPGNHNSERPKFVKASIVIFFYTVFDCFN IPKSADALRSFINTDLNLLFNYDGLYCDENGRIPKPITQSFYAIQQYIRHKTTNNVSAPI NNGLQKKNLGFSKEHLRREDMIRSSSNESFNDQSQGKGIQMRPPDVDKYIDRMIPLSSEN IKQSSSTIYSTGASCSRSTTFETISQGFERGDTMNTVSSFEEFKDTFSPVTQPNRPSGAE SGIEERVVGAEFGSDHLEGIVHYQISPPPGMKHANNNNSDNQQQYFNQNQNIHQHSPSYH PYGLNQKGVTYTNGAISNGANSLLLSTGGLAPSTIGMSSVQHQAPTGEGVKKPSIASSLP KRVANYNYPGN

    No Results
IDSitePositionGscoreIscore
cgd7_370T5860.5200.315
IDSitePositionGscoreIscore
cgd7_370T5860.5200.315
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
cgd7_370385 SMIRSSSNES0.995unspcgd7_370385 SMIRSSSNES0.995unspcgd7_370385 SMIRSSSNES0.995unspcgd7_370389 SSSNESFNDQ0.994unspcgd7_370417 SMIPLSSENI0.99unspcgd7_370459 SNTVSSFEEF0.995unspcgd7_370481 SSGAESGIEE0.996unspcgd7_37028 SRDRYSIRDL0.998unspcgd7_370142 SYLRNSKRCS0.995unsp

cgd7_370      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India