Home
Taxonomy
Apicomplexa
Cryptosporidium parvum
Cryptosporidium hominis
Theileria annulata
Babesia bovis
Eimeria tenella
Neospora caninum
Toxoplasma gondii
Plasmodium vivax
Plasmodium knowlesi
Plasmodium chabaudi
Plasmodium falciparum
Plasmodium yoelii
Plasmodium berghei
Plasmodium cynomolgi
Amoebozoa
Entamoeba dispar
Entamoeba histolytica
Fungi
Saccharomyces cerevisiae
Schizosaccharomyces pombe
Heteroloblosea
Naegleria fowleri
Kinetoplastida
Leishmania major
Leishmania donovani
Leishmania mexicana
Trypanosoma brucei gambience
Class
Aspartate
Cysteine
Serine
Metalloprotease
Threonine
Tools
Blast
Statistics
Other Links
Contact
Acknowledgement
Help
Home
Taxonomy
Apicomplexa
Cryptosporidium parvum
Cryptosporidium hominis
Theileria annulata
Babesia bovis
Eimeria tenella
Neospora caninum
Toxoplasma gondii
Plasmodium vivax
Plasmodium knowlesi
Plasmodium chabaudi
Plasmodium falciparum
Plasmodium yoelii
Plasmodium berghei
Plasmodium cynomolgi
Amoebozoa
Entamoeba dispar
Entamoeba histolytica
Fungi
Saccharomyces cerevisiae
Schizosaccharomyces pombe
Heteroloblosea
Naegleria fowleri
Kinetoplastida
Leishmania major
Leishmania donovani
Leishmania mexicana
Trypanosoma brucei gambience
Class
Aspartate
Cysteine
Serine
Metalloprotease
Threonine
Tools
Blast
Statistics
Other Links
Contact
Acknowledgement
Help
cgd7_3990 |
ubiquitin-like autophagy protein Atg8
ID's
UniProt_ID: A3FPQ4
GEO Functions
Computed_GO_Component_IDs:
Computed_GO_Components:
Computed_GO_Function_IDs:
Computed_GO_Functions:
Computed_GO_Process_IDs:
Computed_GO_Processes:
Curated_GO_Component_IDs:
Curated_GO_Components:
Curated_GO_Function_IDs:
Curated_GO_Functions:
Curated_GO_Processes:
Subcellular Localization
Targetp
_ID
Prediction
OTHER
SP
mTP
CS_Position
cgd7_3990
OTHER
0.957766
0.003518
0.038716
Signalp
No Results
Fasta :-
>cgd7_3990 MNMLVGEFKYIIHKHITQSSNNQNSGIKIPVPYEKTIYLFVNNTIPKAGSLMQEVYEQYV SDDGFLYVEYSSENAFGGYHSII
Download Fasta
Mitoprot
MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/cgd7_3990.fa Sequence name : cgd7_3990 Sequence length : 83 VALUES OF COMPUTED PARAMETERS Coef20 : 3.594 CoefTot : -3.803 ChDiff : -3 ZoneTo : 53 KR : 5 DE : 2 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.459 0.641 -0.188 0.358 MesoH : -1.028 -0.271 -0.581 0.128 MuHd_075 : 32.304 24.001 11.482 8.044 MuHd_095 : 31.295 27.946 9.965 7.380 MuHd_100 : 26.981 24.020 9.023 6.681 MuHd_105 : 29.350 19.695 9.616 7.112 Hmax_075 : 7.300 8.100 0.883 3.911 Hmax_095 : 17.413 18.800 3.143 6.740 Hmax_100 : 7.400 15.800 1.021 3.470 Hmax_105 : 1.300 1.283 -0.329 2.158 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.6518 0.3482 DFMC : 0.8234 0.1766
ProPeptide Prediction
##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 83 cgd7_3990 MNMLVGEFKYIIHKHITQSSNNQNSGIKIPVPYEKTIYLFVNNTIPKAGSLMQEVYEQYVSDDGFLYVEYSSENAFGGYH 80 SII 160 ................................................................................ 80 ... 160 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ cgd7_3990 9 MLVGEFK|YI 0.080 . cgd7_3990 14 FKYIIHK|HI 0.069 . cgd7_3990 28 NQNSGIK|IP 0.064 . cgd7_3990 35 IPVPYEK|TI 0.067 . cgd7_3990 47 VNNTIPK|AG 0.068 . ____________________________^_________________
Sequence
Nucleotide sequence
Fasta :-
>cgd7_3990 ATTTTTAGTCCCAATGAATATGTTGGTTGGAGAATTCAAGTATATAATTCATAAGCATAT TACTCAATCTTCTAATAATCAAAACAGTGGAATTAAAATACCTGTACCATACGAGAAGAC TATATATTTATTTGTGAATAATACGATACCCAAGGCTGGGTCGTTAATGCAAGAAGTATA CGAGCAATATGTTTCTGATGACGGGTTCCTATATGTAGAATATAGCTCTGAAAATGCATT TGGTGGATATCATTCCATTATCTAG
Download Fasta
Protein sequence
Fasta :-
MNMLVGEFKYIIHKHITQSSNNQNSGIKIPVPYEKTIYLFVNNTIPKAGSLMQEVYEQYV SDDGFLYVEYSSENAFGGYHSII
Domains
GABARAP-like
Structure
No Results
Post Translational Modifications
N_Linked Glycosylation
No Results
O_Linked Glycosylation
No Results
Phosphorylation
No Results
Protein-Protein Interaction
String
cgd7_3990
Literature
PubMed
Google Scholar
Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India