cgd8_840 | 26S proteasome subunit P45/AAA+ ATpase

_IDPredictionOTHERSPmTPCS_Position
cgd8_840OTHER0.9998760.0000150.000108
No Results

  • Fasta :-

    >cgd8_840 MSGEDEHKNTLATYAQKVKEHRELEVSLKKKRMEIRELSKVYDKTEDDLKALQSVGQIIG EVLRHLDDEKCIVKASTGPRYVVGCRSKLDKSKLTSGTRVALDATTLTIMRRLPREVDPM VYNMLHEDPGSVSYSQVGGLNEQIREIREVIELPLTNPELFKRVGIKTPKGVLLYGPPGT GKTLLARAMASSMNCNFMKVVASAIVDKYIGESARVIREMFGYAKDHQPCVIFMDEIDAI GGKRFSQGTSADREIQRTLMELLNQLDGFDELGAVKIIMATNRPDVLDPALLRPGRLDRK VEIPLPNETSRVEILKIHSSKLAKQGEIDFDAICKLCDGFNGADMRNVCSEAGMFAIRAE RDYIIEEDFLKAVRKLAENKKMEGNLDYEKV
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/cgd8_840.fa Sequence name : cgd8_840 Sequence length : 391 VALUES OF COMPUTED PARAMETERS Coef20 : 3.016 CoefTot : -0.138 ChDiff : 0 ZoneTo : 3 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.729 1.076 -0.052 0.337 MesoH : -0.670 0.289 -0.380 0.176 MuHd_075 : 9.390 5.244 2.785 1.808 MuHd_095 : 20.984 14.230 6.377 5.124 MuHd_100 : 14.030 14.866 3.989 4.486 MuHd_105 : 6.278 14.260 1.981 3.315 Hmax_075 : -9.800 -0.233 -4.436 0.782 Hmax_095 : 5.500 4.200 -0.887 3.110 Hmax_100 : -3.900 6.100 -3.246 2.420 Hmax_105 : -9.012 -0.175 -5.483 0.945 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9910 0.0090 DFMC : 0.9812 0.0188
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 391 cgd8_840 MSGEDEHKNTLATYAQKVKEHRELEVSLKKKRMEIRELSKVYDKTEDDLKALQSVGQIIGEVLRHLDDEKCIVKASTGPR 80 YVVGCRSKLDKSKLTSGTRVALDATTLTIMRRLPREVDPMVYNMLHEDPGSVSYSQVGGLNEQIREIREVIELPLTNPEL 160 FKRVGIKTPKGVLLYGPPGTGKTLLARAMASSMNCNFMKVVASAIVDKYIGESARVIREMFGYAKDHQPCVIFMDEIDAI 240 GGKRFSQGTSADREIQRTLMELLNQLDGFDELGAVKIIMATNRPDVLDPALLRPGRLDRKVEIPLPNETSRVEILKIHSS 320 KLAKQGEIDFDAICKLCDGFNGADMRNVCSEAGMFAIRAERDYIIEEDFLKAVRKLAENKKMEGNLDYEKV 400 ................................................................................ 80 ..................................P............................................. 160 ................................................................................ 240 ................................................................................ 320 ....................................................................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ cgd8_840 8 SGEDEHK|NT 0.062 . cgd8_840 17 LATYAQK|VK 0.061 . cgd8_840 19 TYAQKVK|EH 0.071 . cgd8_840 22 QKVKEHR|EL 0.113 . cgd8_840 29 ELEVSLK|KK 0.064 . cgd8_840 30 LEVSLKK|KR 0.083 . cgd8_840 31 EVSLKKK|RM 0.127 . cgd8_840 32 VSLKKKR|ME 0.166 . cgd8_840 36 KKRMEIR|EL 0.145 . cgd8_840 40 EIRELSK|VY 0.067 . cgd8_840 44 LSKVYDK|TE 0.058 . cgd8_840 50 KTEDDLK|AL 0.062 . cgd8_840 64 IIGEVLR|HL 0.106 . cgd8_840 70 RHLDDEK|CI 0.062 . cgd8_840 74 DEKCIVK|AS 0.056 . cgd8_840 80 KASTGPR|YV 0.165 . cgd8_840 86 RYVVGCR|SK 0.092 . cgd8_840 88 VVGCRSK|LD 0.059 . cgd8_840 91 CRSKLDK|SK 0.126 . cgd8_840 93 SKLDKSK|LT 0.075 . cgd8_840 99 KLTSGTR|VA 0.076 . cgd8_840 111 TTLTIMR|RL 0.070 . cgd8_840 112 TLTIMRR|LP 0.128 . cgd8_840 115 IMRRLPR|EV 0.524 *ProP* cgd8_840 145 GLNEQIR|EI 0.138 . cgd8_840 148 EQIREIR|EV 0.278 . cgd8_840 162 TNPELFK|RV 0.087 . cgd8_840 163 NPELFKR|VG 0.148 . cgd8_840 167 FKRVGIK|TP 0.067 . cgd8_840 170 VGIKTPK|GV 0.074 . cgd8_840 182 GPPGTGK|TL 0.060 . cgd8_840 187 GKTLLAR|AM 0.086 . cgd8_840 199 MNCNFMK|VV 0.090 . cgd8_840 208 ASAIVDK|YI 0.098 . cgd8_840 215 YIGESAR|VI 0.105 . cgd8_840 218 ESARVIR|EM 0.320 . cgd8_840 225 EMFGYAK|DH 0.067 . cgd8_840 243 IDAIGGK|RF 0.068 . cgd8_840 244 DAIGGKR|FS 0.130 . cgd8_840 253 QGTSADR|EI 0.077 . cgd8_840 257 ADREIQR|TL 0.106 . cgd8_840 276 DELGAVK|II 0.056 . cgd8_840 283 IIMATNR|PD 0.073 . cgd8_840 293 LDPALLR|PG 0.067 . cgd8_840 296 ALLRPGR|LD 0.208 . cgd8_840 299 RPGRLDR|KV 0.485 . cgd8_840 300 PGRLDRK|VE 0.066 . cgd8_840 311 LPNETSR|VE 0.099 . cgd8_840 316 SRVEILK|IH 0.072 . cgd8_840 321 LKIHSSK|LA 0.102 . cgd8_840 324 HSSKLAK|QG 0.086 . cgd8_840 335 DFDAICK|LC 0.056 . cgd8_840 346 FNGADMR|NV 0.136 . cgd8_840 358 AGMFAIR|AE 0.091 . cgd8_840 361 FAIRAER|DY 0.308 . cgd8_840 371 IEEDFLK|AV 0.071 . cgd8_840 374 DFLKAVR|KL 0.072 . cgd8_840 375 FLKAVRK|LA 0.110 . cgd8_840 380 RKLAENK|KM 0.068 . cgd8_840 381 KLAENKK|ME 0.099 . cgd8_840 390 GNLDYEK|V- 0.056 . ____________________________^_________________

  • Fasta :-

    >cgd8_840 ATAGTAGAACTTGGATATTCAAAGGCGGATGCAGAACAGACAAAGATGAGTGGGGAAGAT GAACATAAGAATACTTTAGCAACTTACGCTCAAAAAGTTAAAGAGCATAGGGAACTGGAA GTTAGCTTGAAAAAGAAGAGAATGGAGATTAGGGAGCTAAGCAAAGTATATGATAAGACA GAGGATGATTTGAAGGCATTGCAGAGTGTGGGCCAGATAATAGGCGAAGTATTGAGACAT TTGGATGATGAAAAGTGTATAGTAAAGGCTTCAACAGGACCTAGATATGTTGTAGGATGT AGATCAAAGCTTGATAAAAGCAAATTAACATCTGGAACTAGAGTTGCTTTAGATGCAACT ACTTTGACCATAATGAGAAGACTTCCAAGAGAAGTTGATCCAATGGTTTACAATATGCTT CACGAAGATCCTGGAAGCGTAAGCTACTCTCAAGTAGGAGGATTGAATGAGCAGATTAGG GAGATAAGAGAAGTTATTGAGCTTCCTTTGACTAATCCTGAGCTATTTAAAAGAGTCGGA ATCAAGACTCCTAAGGGAGTACTTTTGTATGGGCCCCCAGGAACTGGCAAAACTCTTTTG GCTAGGGCTATGGCTTCATCCATGAATTGTAACTTTATGAAGGTTGTTGCATCAGCAATA GTAGACAAATACATTGGAGAAAGTGCGAGAGTTATAAGGGAAATGTTTGGTTATGCTAAG GATCACCAACCATGCGTTATATTTATGGATGAGATTGACGCTATAGGCGGAAAGAGATTC TCCCAAGGTACTTCTGCTGATCGTGAGATTCAGAGAACCTTGATGGAATTATTAAACCAA CTGGATGGTTTTGACGAACTTGGGGCTGTCAAAATAATTATGGCTACAAATAGACCTGAT GTGTTAGATCCAGCTCTATTAAGACCTGGAAGACTTGACAGAAAGGTTGAAATTCCTCTT CCAAATGAAACCTCAAGAGTTGAAATCCTCAAGATTCATTCCTCTAAGTTAGCTAAACAA GGAGAAATAGACTTTGATGCTATTTGCAAGCTTTGTGATGGCTTTAACGGAGCAGATATG AGAAATGTTTGTTCAGAAGCAGGAATGTTTGCAATTAGAGCTGAAAGAGACTACATTATT GAAGAAGATTTTCTCAAAGCAGTGAGGAAATTGGCTGAAAATAAGAAGATGGAAGGGAAT TTGGACTACGAAAAGGTTTAAAAAGTAGATTAGATAACAAT
  • Download Fasta

  • Fasta :-

    MSGEDEHKNTLATYAQKVKEHRELEVSLKKKRMEIRELSKVYDKTEDDLKALQSVGQIIG EVLRHLDDEKCIVKASTGPRYVVGCRSKLDKSKLTSGTRVALDATTLTIMRRLPREVDPM VYNMLHEDPGSVSYSQVGGLNEQIREIREVIELPLTNPELFKRVGIKTPKGVLLYGPPGT GKTLLARAMASSMNCNFMKVVASAIVDKYIGESARVIREMFGYAKDHQPCVIFMDEIDAI GGKRFSQGTSADREIQRTLMELLNQLDGFDELGAVKIIMATNRPDVLDPALLRPGRLDRK VEIPLPNETSRVEILKIHSSKLAKQGEIDFDAICKLCDGFNGADMRNVCSEAGMFAIRAE RDYIIEEDFLKAVRKLAENKKMEGNLDYEKV

  • title: ATP binding site
  • coordinates: P177,P178,G179,T180,G181,K182,T183,L184,D235,N282
No Results
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No Results

cgd8_840      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India