Repeat Search@ICGEB

Perfect Repeats Section

This section contains Protein sequence units which are identically duplicated. The section includes hetero as well as homo perfect repeats of size >=5 residues and frequency >=2.
Mismatch Repeats Perfect Repeats REGEXP Search Tools Home
Mainpage Hetero and Homo repeats Comparative Search Homorepeats < 10 residues Mainpage BLAST DIREP


Quick Search ProtRepeatsDB by keyword e.g. polymerase,hsp70   
Quick Search by GO Annotation ID e.g. 0005634                  
Select search parameters from the current section:
**To select / deselect multiple organisms in the right panel, hold Ctrl key and click/drag the mouse to choose organisms.


Search repeats by RefSeq ID             
e.g. accession number 15228967 (Arabidopsis thaliana)
Hetero Repeats onlyHomo Repeats only (Maximal repeats only)
Homo Repeats only (including subrepeats too)
    Select only one out of the above two.
Default search: hetero + homo (maximal) repeats sections.



Search proteins by repeats            
Enter the sequence of repeat (min. length=5)


Select repeats having length (L)    
Default length (L) = 5, Choose L >= 5.


Select repeats having frequency (F) 
Default frequency (F) = 2, Choose F >=2.


EUKARYOTES:


PROKARYOTES (A-C):


PROKARYOTES (C-M):


PROKARYOTES (M-S):


PROKARYOTES (S-Z):


ARCHEBACTERIA:

      

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