{"id":57,"date":"2021-12-07T05:56:53","date_gmt":"2021-12-07T05:56:53","guid":{"rendered":"http:\/\/tbioinfo.icgeb.res.in\/bioinfo\/?page_id=57"},"modified":"2024-05-07T06:09:22","modified_gmt":"2024-05-07T06:09:22","slug":"infrastructure","status":"publish","type":"page","link":"https:\/\/bioinfo.icgeb.res.in\/bioinfo\/index.php\/infrastructure\/","title":{"rendered":"Infrastructure"},"content":{"rendered":"\n<div class=\"wp-block-columns is-layout-flex wp-container-core-columns-is-layout-1 wp-block-columns-is-layout-flex\">\n<div class=\"wp-block-column is-layout-flow wp-block-column-is-layout-flow\">\n<h4 style=\"text-align: center;\"><strong>Hardware<\/strong><\/h4>\n<p><strong>High Performance Computing(HPC)<\/strong><br \/>One IBM HPC 4-node cluster comprising two power-8 master nodes, two power-9 compute nodes and two power-9 GPU nodes with four NVIDIA Tesla V100-16GB GPUs in each along with attached 235 TB storage server.<\/p>\n<p>Two Tyrone server in rocks cluster with 10TB Tyrone storage attached.<\/p>\n<p><strong>Workstation<\/strong><br \/>1. Nine Dell Desktop with Intel Processor more than 8GB RAM and more that 1TB HDD using Linux environment OS.<br \/>2. Twenty three Tyrone workstation with Intel Processor and 32 GB to 256 GB RAM and more than 4TB HDD using Linux environment OS.<br \/>3. Two Sun microsystem Ultra-27 with Intel processor with more than 16GB RAM and 500 GB HDD using using Linux environment OS.<br \/>4. One iMAC and one HP ALL-in-One with windows 11 for office work<\/p>\n<p><strong>Server<\/strong><br \/>1. One HPE DL385 G10+ server with AMD EPYC 128 Core Processor, 1TB RAM, about 6TB SATA SSD, and NVIDIA A100 80GB GPU for AI application development in Ubuntu 22.04 Linux environment.<br \/>2. One Tyrone DS400TG-48R server having RHEL-7 Linux OS environment with Intel Xeon Gold 80 core processor, 256 GB RAM, 500GB SSD, NVIDIA Tesla V100-PCIE-32GB GPU with 94TB attached Tyrone Opslag storage server.<br \/>3. One Dell windows 2008 server with Xeon processor and 128GB RAM.<br \/>4. One Sun Fire X2200 M2 with AMD Opteron 8 core processor, 32 GB RAM, 1TB HDD<\/p>\n<\/div>\n\n\n\n<div class=\"wp-block-column is-layout-flow wp-block-column-is-layout-flow\">\n<h4 style=\"text-align: center;\"><strong>Software<\/strong><\/h4>\n<p><strong>GOLD<\/strong><br \/>Software for virtual screening, lead optimisation, and identifying the correct binding mode of active molecules.<\/p>\n<p><strong>GROMACS 2018.3<\/strong><\/p>\n<p>An open-source software suite for high-performance molecular dynamics and output analysis.<\/p>\n<p><strong>JupyterLab<\/strong><\/p>\n<p>JupyterLab is a highly extensible, feature-rich notebook authoring application and editing environment for interactive computing with computational notebooks for a centralized data science environment on a server. It contain python based AI libraries like Tensorflow for AI application development.<\/p>\n<p><strong>RStudio Server<\/strong><\/p>\n<p>It provide a browser-based interface for centralized data science environment on a server, bringing the power and productivity of the RStudio IDE to server-based deployments of R.<\/p>\n<p><strong>Virtualization<\/strong><\/p>\n<p>Red Hat Virtualization Manager Web Administration for Virtual Machines<\/p>\n<p><strong>CLC Genomics Workbench<\/strong><br \/>A comprehensive and user-friendly analysis package for analyzing, comparing, and visualizing next generation sequencing data.<\/p>\n<p><strong>AMBER<\/strong><br \/>A suite of programs that allow users to carry out molecular dynamic simulations.<\/p>\n<\/div>\n<\/div>\n\n\n\n<div class=\"wp-block-columns is-layout-flex wp-container-core-columns-is-layout-2 wp-block-columns-is-layout-flex\">\n<div class=\"wp-block-column is-layout-flow wp-block-column-is-layout-flow\"><\/div>\n\n\n\n<div class=\"wp-block-column is-layout-flow wp-block-column-is-layout-flow\"><\/div>\n<\/div>\n","protected":false},"excerpt":{"rendered":"<p>Hardware High Performance Computing(HPC)One IBM HPC 4-node cluster comprising two power-8 master nodes, two power-9 compute nodes and two power-9 GPU nodes with four NVIDIA Tesla V100-16GB GPUs in each along with attached 235 TB storage server. Two Tyrone server in rocks cluster with 10TB Tyrone storage attached. Workstation1. Nine Dell Desktop with Intel Processor [&hellip;]<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"template\/fullwidth.php","meta":{"footnotes":""},"_links":{"self":[{"href":"https:\/\/bioinfo.icgeb.res.in\/bioinfo\/index.php\/wp-json\/wp\/v2\/pages\/57"}],"collection":[{"href":"https:\/\/bioinfo.icgeb.res.in\/bioinfo\/index.php\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/bioinfo.icgeb.res.in\/bioinfo\/index.php\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/bioinfo.icgeb.res.in\/bioinfo\/index.php\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/bioinfo.icgeb.res.in\/bioinfo\/index.php\/wp-json\/wp\/v2\/comments?post=57"}],"version-history":[{"count":6,"href":"https:\/\/bioinfo.icgeb.res.in\/bioinfo\/index.php\/wp-json\/wp\/v2\/pages\/57\/revisions"}],"predecessor-version":[{"id":2161,"href":"https:\/\/bioinfo.icgeb.res.in\/bioinfo\/index.php\/wp-json\/wp\/v2\/pages\/57\/revisions\/2161"}],"wp:attachment":[{"href":"https:\/\/bioinfo.icgeb.res.in\/bioinfo\/index.php\/wp-json\/wp\/v2\/media?parent=57"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}