BBOV_I003710 | hypothetical protein

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  • Fasta :-

    >BBOV_I003710 MLNFGARSILNARRGVYYIPASARTVSHYVKHDCEGRGFRKLLGPFWVYTTPVFLTNFAY IGFFFTLLMYPLDSKLYNVRGVKAALDAKIAS
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/BBOV_I003710.fa Sequence name : BBOV_I003710 Sequence length : 92 VALUES OF COMPUTED PARAMETERS Coef20 : 4.240 CoefTot : -0.399 ChDiff : 8 ZoneTo : 32 KR : 5 DE : 0 CleavSite : 26 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.088 1.835 0.219 0.760 MesoH : -0.444 0.271 -0.352 0.219 MuHd_075 : 35.370 20.770 9.362 7.572 MuHd_095 : 33.550 23.588 9.800 7.936 MuHd_100 : 39.218 27.575 11.202 9.534 MuHd_105 : 47.184 29.592 12.728 10.453 Hmax_075 : 12.133 14.467 2.288 4.818 Hmax_095 : 14.100 17.700 2.335 5.620 Hmax_100 : 14.100 17.700 3.442 5.620 Hmax_105 : 14.700 20.533 3.517 5.787 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0894 0.9106 DFMC : 0.1022 0.8978 This protein is probably imported in mitochondria. f(Ser) = 0.0938 f(Arg) = 0.1250 CMi = 0.38265 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 92 BBOV_I003710 MLNFGARSILNARRGVYYIPASARTVSHYVKHDCEGRGFRKLLGPFWVYTTPVFLTNFAYIGFFFTLLMYPLDSKLYNVR 80 GVKAALDAKIAS 160 ................................................................................ 80 ............ 160 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ BBOV_I003710 7 MLNFGAR|SI 0.192 . BBOV_I003710 13 RSILNAR|RG 0.074 . BBOV_I003710 14 SILNARR|GV 0.203 . BBOV_I003710 24 YIPASAR|TV 0.156 . BBOV_I003710 31 TVSHYVK|HD 0.081 . BBOV_I003710 37 KHDCEGR|GF 0.096 . BBOV_I003710 40 CEGRGFR|KL 0.185 . BBOV_I003710 41 EGRGFRK|LL 0.091 . BBOV_I003710 75 MYPLDSK|LY 0.054 . BBOV_I003710 80 SKLYNVR|GV 0.151 . BBOV_I003710 83 YNVRGVK|AA 0.119 . BBOV_I003710 89 KAALDAK|IA 0.076 . ____________________________^_________________

  • Fasta :-

    >BBOV_I003710 AAAACACTAGCTATGCTTAATTTTGGTGCGAGGTCAATTTTAAACGCCCGTAGGGGTGTT TACTACATTCCGGCTTCTGCTAGAACGGTTAGCCATTATGTGAAGCATGACTGTGAGGGT CGTGGATTTCGCAAGTTGCTAGGTCCATTTTGGGTATATACGACACCTGTATTTCTAACT AATTTCGCCTATATTGGTTTTTTCTTTACTCTTTTGATGTATCCTTTGGACTCAAAGCTT TACAATGTGCGCGGTGTGAAAGCTGCACTTGACGCCAAAATAGCTTCATGAACTATAGAG TTATCCAACTTTGGTTATTTACCTGCAGTCATATCGTATTTGTACACCATGCCTAATTTA ATGTATTAGGTTCTATT
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Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India