Serine

Serine proteases are ubiquitous in nature and present in all kingdoms of life along with the viruses. They are endopeptidases that cleaves peptide bonds like other proteases having serine as a nucleophile. The serine proteases in addition to proteolytic activity also perform the other functions such as protein metabolism, digestion, regulation of development, fertilisation, blood coagulation, immunity, and apoptosis (Di Cera, 2009, Gohara and Di Cera, 2011, Patel, 2017). Two step hydrolytic reaction is carried out by serine proteases: one acylation producing a covalently linked enzyme-peptide intermediate (Fastrezx and Fersht, 1973), followed by de-acylation process mediated by a nucleophilic attack on the intermediate by water causing the peptide hydrolysis (Rao et al., 1998). Catalytic serine nucleophilicity depends on the triad Asp, His, and Ser. The catalytic triad is utilized by trypsin, prolyl oligopeptidase, subtilisin, and ClpP, however, the other proteases employ a simpler dyad mechanism where Lys or His is paired with the catalytic Ser. Serine proteases based on their primary substrate specificity can be classified into three groups: a) trypsin-like, which cleave after positively charged residues; (ii) chymotrypsin-like, which cleave after large hydrophobic residues; and (iii) elastase-like, which cleave after small hydrophobic residues (Rao et al., 1998).

ProtPathDB Data Table

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GeneID
Product_Description
Transcript_Product_Description
Pubmed
Google Scholar
BBOV_I003700 hypothetical protein hypothetical protein https://pubmed.ncbi.nlm.nih.gov/?term=BBOV_I003700ORhypothetical proteinANDBabesia bovis T2Bo https://scholar.google.com/scholar?hl=en&as_sdt=0%2C5&q=BBOV_I003700 OR hypothetical protein AND Babesia bovis T2Bo
BBOV_I004260 conserved hypothetical protein conserved hypothetical protein https://pubmed.ncbi.nlm.nih.gov/?term=BBOV_I004260ORconserved hypothetical proteinANDBabesia bovis T2Bo https://scholar.google.com/scholar?hl=en&as_sdt=0%2C5&q=BBOV_I004260 OR conserved hypothetical protein AND Babesia bovis T2Bo
BBOV_II000230 putative serine esterase domain containing protein putative serine esterase domain containing protein https://pubmed.ncbi.nlm.nih.gov/?term=BBOV_II000230ORputative serine esterase domain containing proteinANDBabesia bovis T2Bo https://scholar.google.com/scholar?hl=en&as_sdt=0%2C5&q=BBOV_II000230 OR putative serine esterase domain containing protein AND Babesia bovis T2Bo
BBOV_II002340 hypothetical protein hypothetical protein https://pubmed.ncbi.nlm.nih.gov/?term=BBOV_II002340ORhypothetical proteinANDBabesia bovis T2Bo https://scholar.google.com/scholar?hl=en&as_sdt=0%2C5&q=BBOV_II002340 OR hypothetical protein AND Babesia bovis T2Bo
BBOV_II003250 eukaryotic translation initiation factor 3 subunit, putative eukaryotic translation initiation factor 3 subunit, putative https://pubmed.ncbi.nlm.nih.gov/?term=BBOV_II003250OReukaryotic translation initiation factor 3 subunit, putativeANDBabesia bovis T2Bo https://scholar.google.com/scholar?hl=en&as_sdt=0%2C5&q=BBOV_II003250 OR eukaryotic translation initiation factor 3 subunit, putative AND Babesia bovis T2Bo
BBOV_II004070 ATP-dependent Clp protease proteolytic subunit 1, putative ATP-dependent Clp protease proteolytic subunit 1, putative https://pubmed.ncbi.nlm.nih.gov/?term=BBOV_II004070ORATP-dependent Clp protease proteolytic subunit 1, putativeANDBabesia bovis T2Bo https://scholar.google.com/scholar?hl=en&as_sdt=0%2C5&q=BBOV_II004070 OR ATP-dependent Clp protease proteolytic subunit 1, putative AND Babesia bovis T2Bo
BBOV_II004100 ClpB, putative ClpB, putative https://pubmed.ncbi.nlm.nih.gov/?term=BBOV_II004100ORClpB, putativeANDBabesia bovis T2Bo https://scholar.google.com/scholar?hl=en&as_sdt=0%2C5&q=BBOV_II004100 OR ClpB, putative AND Babesia bovis T2Bo
BBOV_II004840 hypothetical protein hypothetical protein https://pubmed.ncbi.nlm.nih.gov/?term=BBOV_II004840ORhypothetical proteinANDBabesia bovis T2Bo https://scholar.google.com/scholar?hl=en&as_sdt=0%2C5&q=BBOV_II004840 OR hypothetical protein AND Babesia bovis T2Bo
BBOV_II005930 rhomboid 4 rhomboid 4 https://pubmed.ncbi.nlm.nih.gov/?term=BBOV_II005930ORrhomboid 4ANDBabesia bovis T2Bo https://scholar.google.com/scholar?hl=en&as_sdt=0%2C5&q=BBOV_II005930 OR rhomboid 4 AND Babesia bovis T2Bo
BBOV_II005940 rhomboid 4 rhomboid 4 https://pubmed.ncbi.nlm.nih.gov/?term=BBOV_II005940ORrhomboid 4ANDBabesia bovis T2Bo https://scholar.google.com/scholar?hl=en&as_sdt=0%2C5&q=BBOV_II005940 OR rhomboid 4 AND Babesia bovis T2Bo
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Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India