BBOV_I004450 | proteasome beta 2 subunit, putative

_IDPredictionOTHERSPmTPCS_Position
BBOV_I004450OTHER0.9999730.0000230.000004
No Results

  • Fasta :-

    >BBOV_I004450 MADTLIGIKGPDFVAIACDTYEKYSIITIKNDDESKIMKIGDSKVMMLAGPLGDRSQFSK MIKATLDYHKYKNSKELSTNAAAHFVRLELAEYLRQSPYQVDMLIAGIDQDGPKLFWIDY LASCTQADTAVHGYGGFLLRGLLDKEYKPNMTREEAIALLKKCRHEVQNRFLISQSNFAA KIIDKDGVHDVDIKDDDVPEAFTSKHHTAYMPIDVTMQ
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/BBOV_I004450.fa Sequence name : BBOV_I004450 Sequence length : 218 VALUES OF COMPUTED PARAMETERS Coef20 : 3.647 CoefTot : 0.141 ChDiff : -5 ZoneTo : 2 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.359 1.071 -0.031 0.461 MesoH : -0.952 0.057 -0.479 0.158 MuHd_075 : 17.218 6.899 3.006 3.116 MuHd_095 : 6.992 9.707 2.782 2.146 MuHd_100 : 4.321 5.089 2.840 0.885 MuHd_105 : 15.483 4.532 4.664 0.932 Hmax_075 : 16.917 18.433 3.358 6.230 Hmax_095 : 9.187 15.050 2.026 4.795 Hmax_100 : 12.100 15.300 3.391 4.840 Hmax_105 : 13.100 11.317 3.260 4.900 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9395 0.0605 DFMC : 0.9591 0.0409
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 218 BBOV_I004450 MADTLIGIKGPDFVAIACDTYEKYSIITIKNDDESKIMKIGDSKVMMLAGPLGDRSQFSKMIKATLDYHKYKNSKELSTN 80 AAAHFVRLELAEYLRQSPYQVDMLIAGIDQDGPKLFWIDYLASCTQADTAVHGYGGFLLRGLLDKEYKPNMTREEAIALL 160 KKCRHEVQNRFLISQSNFAAKIIDKDGVHDVDIKDDDVPEAFTSKHHTAYMPIDVTMQ 240 ................................................................................ 80 ................................................................................ 160 .......................................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ BBOV_I004450 9 DTLIGIK|GP 0.053 . BBOV_I004450 23 ACDTYEK|YS 0.058 . BBOV_I004450 30 YSIITIK|ND 0.071 . BBOV_I004450 36 KNDDESK|IM 0.058 . BBOV_I004450 39 DESKIMK|IG 0.076 . BBOV_I004450 44 MKIGDSK|VM 0.060 . BBOV_I004450 55 AGPLGDR|SQ 0.081 . BBOV_I004450 60 DRSQFSK|MI 0.103 . BBOV_I004450 63 QFSKMIK|AT 0.074 . BBOV_I004450 70 ATLDYHK|YK 0.066 . BBOV_I004450 72 LDYHKYK|NS 0.067 . BBOV_I004450 75 HKYKNSK|EL 0.073 . BBOV_I004450 87 AAAHFVR|LE 0.080 . BBOV_I004450 95 ELAEYLR|QS 0.081 . BBOV_I004450 114 IDQDGPK|LF 0.060 . BBOV_I004450 140 YGGFLLR|GL 0.100 . BBOV_I004450 145 LRGLLDK|EY 0.067 . BBOV_I004450 148 LLDKEYK|PN 0.067 . BBOV_I004450 153 YKPNMTR|EE 0.072 . BBOV_I004450 161 EAIALLK|KC 0.057 . BBOV_I004450 162 AIALLKK|CR 0.102 . BBOV_I004450 164 ALLKKCR|HE 0.092 . BBOV_I004450 170 RHEVQNR|FL 0.102 . BBOV_I004450 181 QSNFAAK|II 0.095 . BBOV_I004450 185 AAKIIDK|DG 0.062 . BBOV_I004450 194 VHDVDIK|DD 0.065 . BBOV_I004450 205 PEAFTSK|HH 0.065 . ____________________________^_________________

  • Fasta :-

    >BBOV_I004450 ATGGCAGACACACTTATCGGAATTAAAGGGCCAGATTTTGTCGCAATAGCCTGCGATACC TACGAAAAATACTCAATAATCACCATCAAAAATGATGATGAAAGTAAAATTATGAAAATA GGAGACTCAAAAGTCATGATGCTAGCTGGTCCACTAGGAGATCGATCGCAGTTTTCGAAG ATGATTAAAGCCACTTTGGATTATCACAAATACAAAAATTCAAAAGAACTTTCAACCAAT GCCGCTGCACATTTCGTAAGACTTGAGCTGGCAGAATACCTAAGACAGAGTCCGTATCAA GTTGATATGCTCATCGCAGGAATAGATCAGGATGGACCTAAACTTTTCTGGATTGACTAC TTGGCTAGCTGCACTCAGGCAGATACAGCCGTACATGGTTACGGTGGATTCCTACTTAGA GGGTTACTAGACAAGGAATACAAACCTAACATGACGAGAGAAGAGGCTATAGCATTGCTG AAGAAGTGTAGACATGAAGTGCAAAACCGTTTCCTTATTTCGCAGTCCAACTTTGCCGCA AAAATCATAGACAAGGATGGTGTACATGATGTTGATATCAAGGATGATGATGTGCCAGAA GCATTCACTTCTAAACATCATACAGCCTACATGCCTATAGATGTGACCATGCAATAG
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  • Fasta :-

    MADTLIGIKGPDFVAIACDTYEKYSIITIKNDDESKIMKIGDSKVMMLAGPLGDRSQFSK MIKATLDYHKYKNSKELSTNAAAHFVRLELAEYLRQSPYQVDMLIAGIDQDGPKLFWIDY LASCTQADTAVHGYGGFLLRGLLDKEYKPNMTREEAIALLKKCRHEVQNRFLISQSNFAA KIIDKDGVHDVDIKDDDVPEAFTSKHHTAYMPIDVTMQ

    No Results
No Results
No Results
IDSitePeptideScoreMethod
BBOV_I00445097 SYLRQSPYQV0.992unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India