BBOV_II001800 | hypothetical protein

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_IDPredictionOTHERSPmTPCS_Position
BBOV_II001800OTHER0.6600910.1601730.179737
No Results

  • Fasta :-

    >BBOV_II001800 MFTYSISTCLFKKCHIPLLLMNFKSIVRFCLINYIFIGNIVAFPSVPKNLHTAQPKRVHT VEVRGNSYLSRAAIMTAATQEKPYQVYMKAYDLSRGIAAQISPTLLGFQLEGLWHTSIVI YGNEYLFGSGISYYPEKQCESITALPVSRRIYLGDTYVTPEVFHSYIDSLKETFSPESYN LLRWNCNHFTNAAAEFLTGKGIDDEYVHMVERIEQSPQGKILLSFIQQVTPEATNILQVP TGKQ
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/BBOV_II001800.fa Sequence name : BBOV_II001800 Sequence length : 244 VALUES OF COMPUTED PARAMETERS Coef20 : 4.352 CoefTot : -1.566 ChDiff : 2 ZoneTo : 80 KR : 9 DE : 1 CleavSite : 66 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.388 1.847 0.241 0.672 MesoH : -0.293 0.469 -0.306 0.248 MuHd_075 : 38.210 34.672 12.174 9.838 MuHd_095 : 31.258 22.465 8.596 7.603 MuHd_100 : 29.408 19.016 8.004 8.687 MuHd_105 : 24.047 19.067 8.371 7.322 Hmax_075 : 21.000 28.500 6.490 8.700 Hmax_095 : 10.800 10.200 3.330 5.180 Hmax_100 : 4.000 6.800 4.964 4.280 Hmax_105 : 21.467 26.100 6.439 3.920 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0502 0.9498 DFMC : 0.0817 0.9183 This protein is probably imported in mitochondria. f(Ser) = 0.0750 f(Arg) = 0.0500 CMi = 0.53571 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 244 BBOV_II001800 MFTYSISTCLFKKCHIPLLLMNFKSIVRFCLINYIFIGNIVAFPSVPKNLHTAQPKRVHTVEVRGNSYLSRAAIMTAATQ 80 EKPYQVYMKAYDLSRGIAAQISPTLLGFQLEGLWHTSIVIYGNEYLFGSGISYYPEKQCESITALPVSRRIYLGDTYVTP 160 EVFHSYIDSLKETFSPESYNLLRWNCNHFTNAAAEFLTGKGIDDEYVHMVERIEQSPQGKILLSFIQQVTPEATNILQVP 240 TGKQ 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ BBOV_II001800 12 ISTCLFK|KC 0.059 . BBOV_II001800 13 STCLFKK|CH 0.100 . BBOV_II001800 24 LLLMNFK|SI 0.066 . BBOV_II001800 28 NFKSIVR|FC 0.066 . BBOV_II001800 48 AFPSVPK|NL 0.066 . BBOV_II001800 56 LHTAQPK|RV 0.091 . BBOV_II001800 57 HTAQPKR|VH 0.165 . BBOV_II001800 64 VHTVEVR|GN 0.081 . BBOV_II001800 71 GNSYLSR|AA 0.142 . BBOV_II001800 82 TAATQEK|PY 0.074 . BBOV_II001800 89 PYQVYMK|AY 0.073 . BBOV_II001800 95 KAYDLSR|GI 0.103 . BBOV_II001800 137 ISYYPEK|QC 0.073 . BBOV_II001800 149 TALPVSR|RI 0.086 . BBOV_II001800 150 ALPVSRR|IY 0.104 . BBOV_II001800 171 SYIDSLK|ET 0.062 . BBOV_II001800 183 ESYNLLR|WN 0.094 . BBOV_II001800 200 AEFLTGK|GI 0.081 . BBOV_II001800 212 YVHMVER|IE 0.072 . BBOV_II001800 220 EQSPQGK|IL 0.073 . BBOV_II001800 243 LQVPTGK|Q- 0.066 . ____________________________^_________________

  • Fasta :-

    >BBOV_II001800 TTATTCCGGTGCACATAACAGCTGTATCTGATATAATGTTCACGTACTCAATATCCACTT GTTTATTTAAAAAATGTCATATACCACTCCTTTTAATGAATTTTAAATCTATAGTTAGAT TTTGTTTAATAAATTACATATTCATTGGGAATATCGTTGCCTTTCCTTCAGTCCCCAAAA ATCTACATACTGCACAACCTAAACGGGTGCATACGGTAGAGGTAAGAGGAAACTCCTACC TCAGTCGAGCTGCCATCATGACGGCTGCAACCCAAGAGAAGCCTTACCAAGTGTATATGA AGGCATATGATCTCTCTCGGGGCATTGCAGCGCAAATATCGCCAACTCTGCTTGGATTTC AATTAGAGGGACTTTGGCACACCAGCATCGTTATATATGGCAATGAGTATCTTTTCGGTA GCGGTATCTCATATTACCCCGAGAAGCAGTGTGAATCCATCACTGCGTTACCGGTTTCAC GACGTATATACTTGGGCGACACCTATGTGACACCTGAAGTATTCCATAGCTACATTGACA GCCTTAAAGAAACCTTTTCACCGGAGTCCTACAATCTACTTCGGTGGAACTGTAACCATT TTACAAATGCAGCGGCCGAATTTTTAACTGGCAAAGGTATTGACGACGAATATGTCCACA TGGTAGAGCGAATTGAGCAAAGTCCGCAGGGTAAAATCCTACTCTCCTTTATACAGCAAG TAACACCTGAAGCTACAAACATACTACAAGTTCCCACTGGGAAGCAATAA
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  • Fasta :-

    MFTYSISTCLFKKCHIPLLLMNFKSIVRFCLINYIFIGNIVAFPSVPKNLHTAQPKRVHT VEVRGNSYLSRAAIMTAATQEKPYQVYMKAYDLSRGIAAQISPTLLGFQLEGLWHTSIVI YGNEYLFGSGISYYPEKQCESITALPVSRRIYLGDTYVTPEVFHSYIDSLKETFSPESYN LLRWNCNHFTNAAAEFLTGKGIDDEYVHMVERIEQSPQGKILLSFIQQVTPEATNILQVP TGKQ

    No Results
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IDSitePeptideScoreMethod
BBOV_II001800165 SEVFHSYIDS0.992unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India