BBOV_II003480 | 26S proteasome regulatory particle non-ATPase subunit8, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0005515      

  • Computed_GO_Functions:  protein binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
BBOV_II003480OTHER0.9712950.0073080.021397
No Results

  • Fasta :-

    >BBOV_II003480 MEQIKKMAFLSSHKKVVLHPIVMLSVVDHYNRAAAGTSRRVVGTILGEMIEGDIHITNSY AVPFEEDTKNPLVWFFDHNYHERMFTMFKKINTKEKVLGWYSTGPKCKPADLEIHELYRK YCPNPIYIIVDINQKEEVPIEAYVSVEEPTSDRRFRRTFAHVPSEMGAFEAEEVGLEHLL RDLTNVTTSTLSTKVDNKVLALKSLVLKLAEIVDYLKGVIGGQYNLNPAIVYMLQDILNL FPSVDSDAIKEAFIINMNDTSLAIYLGSILRAILALHNLIDNMTENKRIAKNKKEAAAAQ PKQTSS
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/BBOV_II003480.fa Sequence name : BBOV_II003480 Sequence length : 306 VALUES OF COMPUTED PARAMETERS Coef20 : 3.656 CoefTot : -1.184 ChDiff : -2 ZoneTo : 47 KR : 7 DE : 2 CleavSite : 42 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.088 1.729 0.208 0.552 MesoH : -0.292 0.757 -0.279 0.349 MuHd_075 : 34.382 29.555 12.864 7.488 MuHd_095 : 45.577 25.475 10.528 9.889 MuHd_100 : 40.156 22.393 9.546 8.709 MuHd_105 : 35.366 19.131 8.395 7.233 Hmax_075 : 16.500 29.750 5.339 8.050 Hmax_095 : 11.463 13.825 2.243 4.419 Hmax_100 : 12.300 14.200 2.228 4.750 Hmax_105 : 12.717 8.500 2.085 4.290 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.3590 0.6410 DFMC : 0.4769 0.5231 This protein is probably imported in mitochondria. f(Ser) = 0.0851 f(Arg) = 0.0638 CMi = 0.53405 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 306 BBOV_II003480 MEQIKKMAFLSSHKKVVLHPIVMLSVVDHYNRAAAGTSRRVVGTILGEMIEGDIHITNSYAVPFEEDTKNPLVWFFDHNY 80 HERMFTMFKKINTKEKVLGWYSTGPKCKPADLEIHELYRKYCPNPIYIIVDINQKEEVPIEAYVSVEEPTSDRRFRRTFA 160 HVPSEMGAFEAEEVGLEHLLRDLTNVTTSTLSTKVDNKVLALKSLVLKLAEIVDYLKGVIGGQYNLNPAIVYMLQDILNL 240 FPSVDSDAIKEAFIINMNDTSLAIYLGSILRAILALHNLIDNMTENKRIAKNKKEAAAAQPKQTSS 320 ................................................................................ 80 ............................................................................P... 160 ................................................................................ 240 .................................................................. 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ BBOV_II003480 5 --MEQIK|KM 0.055 . BBOV_II003480 6 -MEQIKK|MA 0.087 . BBOV_II003480 14 AFLSSHK|KV 0.057 . BBOV_II003480 15 FLSSHKK|VV 0.149 . BBOV_II003480 32 VVDHYNR|AA 0.077 . BBOV_II003480 39 AAAGTSR|RV 0.104 . BBOV_II003480 40 AAGTSRR|VV 0.392 . BBOV_II003480 69 PFEEDTK|NP 0.054 . BBOV_II003480 83 DHNYHER|MF 0.092 . BBOV_II003480 89 RMFTMFK|KI 0.075 . BBOV_II003480 90 MFTMFKK|IN 0.101 . BBOV_II003480 94 FKKINTK|EK 0.057 . BBOV_II003480 96 KINTKEK|VL 0.087 . BBOV_II003480 106 WYSTGPK|CK 0.064 . BBOV_II003480 108 STGPKCK|PA 0.093 . BBOV_II003480 119 EIHELYR|KY 0.085 . BBOV_II003480 120 IHELYRK|YC 0.064 . BBOV_II003480 135 IVDINQK|EE 0.055 . BBOV_II003480 153 EEPTSDR|RF 0.071 . BBOV_II003480 154 EPTSDRR|FR 0.106 . BBOV_II003480 156 TSDRRFR|RT 0.410 . BBOV_II003480 157 SDRRFRR|TF 0.634 *ProP* BBOV_II003480 181 GLEHLLR|DL 0.146 . BBOV_II003480 194 TSTLSTK|VD 0.068 . BBOV_II003480 198 STKVDNK|VL 0.055 . BBOV_II003480 203 NKVLALK|SL 0.072 . BBOV_II003480 208 LKSLVLK|LA 0.078 . BBOV_II003480 217 EIVDYLK|GV 0.072 . BBOV_II003480 250 VDSDAIK|EA 0.082 . BBOV_II003480 271 YLGSILR|AI 0.074 . BBOV_II003480 287 DNMTENK|RI 0.060 . BBOV_II003480 288 NMTENKR|IA 0.142 . BBOV_II003480 291 ENKRIAK|NK 0.128 . BBOV_II003480 293 KRIAKNK|KE 0.074 . BBOV_II003480 294 RIAKNKK|EA 0.169 . BBOV_II003480 302 AAAAQPK|QT 0.079 . ____________________________^_________________

  • Fasta :-

    >BBOV_II003480 ATGGAACAAATAAAGAAGATGGCGTTTCTCTCTTCACATAAAAAGGTGGTATTACACCCG ATCGTAATGCTCTCAGTGGTAGACCATTACAACAGAGCTGCCGCGGGGACCTCGCGACGA GTTGTTGGCACAATTCTTGGAGAGATGATAGAAGGAGACATACACATCACTAATTCATAC GCAGTACCATTCGAAGAGGATACTAAAAATCCATTGGTTTGGTTTTTTGACCATAACTAC CATGAACGCATGTTCACAATGTTCAAAAAAATAAATACAAAGGAAAAGGTACTAGGCTGG TACAGCACCGGACCTAAATGTAAACCTGCTGATTTGGAAATTCATGAACTCTATCGCAAA TACTGTCCAAATCCAATTTATATTATAGTCGATATCAATCAAAAGGAAGAAGTCCCAATA GAAGCATATGTATCAGTAGAAGAACCAACCAGTGATAGAAGATTCAGAAGGACATTTGCA CATGTTCCCTCTGAAATGGGCGCTTTTGAAGCTGAGGAAGTTGGATTGGAACACTTGTTG CGCGATTTAACAAACGTGACCACTTCCACGCTGTCCACCAAAGTTGACAATAAAGTGTTG GCTCTGAAGTCACTAGTGCTCAAACTTGCTGAAATTGTAGATTACCTTAAAGGAGTTATC GGTGGACAGTATAACCTTAACCCTGCCATCGTTTACATGCTACAGGATATACTAAATCTA TTTCCGTCGGTAGATAGTGATGCTATTAAAGAGGCATTTATCATTAACATGAACGACACA TCCTTGGCAATATATCTAGGTAGCATACTCAGGGCCATACTCGCACTCCACAACCTAATT GATAACATGACAGAGAATAAGCGTATTGCCAAAAACAAAAAGGAAGCGGCCGCTGCACAA CCAAAACAAACATCATCATAA
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  • Fasta :-

    MEQIKKMAFLSSHKKVVLHPIVMLSVVDHYNRAAAGTSRRVVGTILGEMIEGDIHITNSY AVPFEEDTKNPLVWFFDHNYHERMFTMFKKINTKEKVLGWYSTGPKCKPADLEIHELYRK YCPNPIYIIVDINQKEEVPIEAYVSVEEPTSDRRFRRTFAHVPSEMGAFEAEEVGLEHLL RDLTNVTTSTLSTKVDNKVLALKSLVLKLAEIVDYLKGVIGGQYNLNPAIVYMLQDILNL FPSVDSDAIKEAFIINMNDTSLAIYLGSILRAILALHNLIDNMTENKRIAKNKKEAAAAQ PKQTSS

    No Results
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No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
BBOV_II003480145 SEAYVSVEEP0.997unspBBOV_II003480151 SEEPTSDRRF0.992unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India