BBOV_II003900 | 26S proteasome AAA-ATPase subunit RPT4a, putative

_IDPredictionOTHERSPmTPCS_Position
BBOV_II003900OTHER0.9999790.0000070.000013
No Results

  • Fasta :-

    >BBOV_II003900 MATESTNPEPEGEDREVIRQYVKKVREHREIDTRLKKLRADIKTLSVKDDQTEDDLKALQ SIGQIVGHVLRPIDNGKLIVKASSGPRYVVFCKTKIDPSTLVSGTRVALDMTTLTIMRKL PREVNPVVFNMLTDTQRPNEENKPLSYSSIGGLDRQIREMRESIELPLRNPYLFKRVGVK PPKGVLLYGPPGTGKTLMAKALASSMDCHFLKVVASAVVDKYIGESARIIREMFGYAKDH QPCIIFMDEIDAIGGKRFSQGTSADREIQRTLMELLTHLDGFDELGQVKIIMATNRPDVL DPALMRPGRIDRKIEIPLPNESSRVDILKIHSSKLNKKGDIDYVAICRLCDGFNGADMRN VCTEAGIFAIRAMRDYVVEEDFFKAARKLTETKKLEGTLTYEKV
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/BBOV_II003900.fa Sequence name : BBOV_II003900 Sequence length : 404 VALUES OF COMPUTED PARAMETERS Coef20 : 3.011 CoefTot : 0.141 ChDiff : 7 ZoneTo : 3 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.588 1.188 -0.031 0.362 MesoH : -0.678 0.324 -0.381 0.201 MuHd_075 : 17.992 9.432 3.772 4.358 MuHd_095 : 19.074 12.146 4.708 4.200 MuHd_100 : 13.638 6.020 3.180 2.571 MuHd_105 : 6.487 1.464 1.774 0.586 Hmax_075 : -3.238 0.700 -2.489 1.881 Hmax_095 : -3.937 0.438 -2.580 1.312 Hmax_100 : -6.100 -1.300 -3.216 0.840 Hmax_105 : -9.567 -3.400 -5.047 -0.020 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9853 0.0147 DFMC : 0.9761 0.0239
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 404 BBOV_II003900 MATESTNPEPEGEDREVIRQYVKKVREHREIDTRLKKLRADIKTLSVKDDQTEDDLKALQSIGQIVGHVLRPIDNGKLIV 80 KASSGPRYVVFCKTKIDPSTLVSGTRVALDMTTLTIMRKLPREVNPVVFNMLTDTQRPNEENKPLSYSSIGGLDRQIREM 160 RESIELPLRNPYLFKRVGVKPPKGVLLYGPPGTGKTLMAKALASSMDCHFLKVVASAVVDKYIGESARIIREMFGYAKDH 240 QPCIIFMDEIDAIGGKRFSQGTSADREIQRTLMELLTHLDGFDELGQVKIIMATNRPDVLDPALMRPGRIDRKIEIPLPN 320 ESSRVDILKIHSSKLNKKGDIDYVAICRLCDGFNGADMRNVCTEAGIFAIRAMRDYVVEEDFFKAARKLTETKKLEGTLT 400 YEKV 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 .... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ BBOV_II003900 15 EPEGEDR|EV 0.116 . BBOV_II003900 19 EDREVIR|QY 0.115 . BBOV_II003900 23 VIRQYVK|KV 0.068 . BBOV_II003900 24 IRQYVKK|VR 0.136 . BBOV_II003900 26 QYVKKVR|EH 0.087 . BBOV_II003900 29 KKVREHR|EI 0.362 . BBOV_II003900 34 HREIDTR|LK 0.071 . BBOV_II003900 36 EIDTRLK|KL 0.062 . BBOV_II003900 37 IDTRLKK|LR 0.178 . BBOV_II003900 39 TRLKKLR|AD 0.137 . BBOV_II003900 43 KLRADIK|TL 0.077 . BBOV_II003900 48 IKTLSVK|DD 0.070 . BBOV_II003900 57 QTEDDLK|AL 0.063 . BBOV_II003900 71 IVGHVLR|PI 0.106 . BBOV_II003900 77 RPIDNGK|LI 0.066 . BBOV_II003900 81 NGKLIVK|AS 0.060 . BBOV_II003900 87 KASSGPR|YV 0.117 . BBOV_II003900 93 RYVVFCK|TK 0.059 . BBOV_II003900 95 VVFCKTK|ID 0.061 . BBOV_II003900 106 TLVSGTR|VA 0.092 . BBOV_II003900 118 TTLTIMR|KL 0.071 . BBOV_II003900 119 TLTIMRK|LP 0.074 . BBOV_II003900 122 IMRKLPR|EV 0.178 . BBOV_II003900 137 MLTDTQR|PN 0.086 . BBOV_II003900 143 RPNEENK|PL 0.076 . BBOV_II003900 155 SIGGLDR|QI 0.106 . BBOV_II003900 158 GLDRQIR|EM 0.241 . BBOV_II003900 161 RQIREMR|ES 0.193 . BBOV_II003900 169 SIELPLR|NP 0.066 . BBOV_II003900 175 RNPYLFK|RV 0.086 . BBOV_II003900 176 NPYLFKR|VG 0.131 . BBOV_II003900 180 FKRVGVK|PP 0.064 . BBOV_II003900 183 VGVKPPK|GV 0.074 . BBOV_II003900 195 GPPGTGK|TL 0.066 . BBOV_II003900 200 GKTLMAK|AL 0.070 . BBOV_II003900 212 MDCHFLK|VV 0.080 . BBOV_II003900 221 ASAVVDK|YI 0.105 . BBOV_II003900 228 YIGESAR|II 0.113 . BBOV_II003900 231 ESARIIR|EM 0.260 . BBOV_II003900 238 EMFGYAK|DH 0.067 . BBOV_II003900 256 IDAIGGK|RF 0.068 . BBOV_II003900 257 DAIGGKR|FS 0.130 . BBOV_II003900 266 QGTSADR|EI 0.077 . BBOV_II003900 270 ADREIQR|TL 0.104 . BBOV_II003900 289 DELGQVK|II 0.059 . BBOV_II003900 296 IIMATNR|PD 0.074 . BBOV_II003900 306 LDPALMR|PG 0.076 . BBOV_II003900 309 ALMRPGR|ID 0.310 . BBOV_II003900 312 RPGRIDR|KI 0.354 . BBOV_II003900 313 PGRIDRK|IE 0.072 . BBOV_II003900 324 LPNESSR|VD 0.108 . BBOV_II003900 329 SRVDILK|IH 0.076 . BBOV_II003900 334 LKIHSSK|LN 0.067 . BBOV_II003900 337 HSSKLNK|KG 0.069 . BBOV_II003900 338 SSKLNKK|GD 0.117 . BBOV_II003900 348 DYVAICR|LC 0.068 . BBOV_II003900 359 FNGADMR|NV 0.141 . BBOV_II003900 371 AGIFAIR|AM 0.089 . BBOV_II003900 374 FAIRAMR|DY 0.323 . BBOV_II003900 384 VEEDFFK|AA 0.071 . BBOV_II003900 387 DFFKAAR|KL 0.082 . BBOV_II003900 388 FFKAARK|LT 0.085 . BBOV_II003900 393 RKLTETK|KL 0.070 . BBOV_II003900 394 KLTETKK|LE 0.085 . BBOV_II003900 403 GTLTYEK|V- 0.053 . ____________________________^_________________

  • Fasta :-

    >BBOV_II003900 ATGGCGACAGAGTCTACCAATCCGGAGCCAGAGGGAGAGGATCGCGAGGTTATACGCCAG TATGTCAAAAAGGTTCGGGAACATCGCGAAATAGACACTCGCTTAAAAAAGTTACGTGCT GATATAAAGACGTTATCAGTTAAAGATGACCAGACGGAAGACGACCTTAAGGCCTTGCAA AGCATCGGGCAGATTGTCGGCCATGTGCTACGTCCCATAGACAATGGAAAGCTTATCGTA AAGGCATCAAGTGGGCCACGATATGTGGTCTTTTGTAAAACAAAAATAGACCCGTCGACC TTGGTATCTGGTACTCGTGTAGCGTTAGACATGACTACATTGACCATTATGAGGAAGTTA CCCAGAGAGGTCAACCCCGTGGTGTTTAACATGCTTACTGATACGCAACGTCCGAATGAG GAAAACAAGCCGTTGAGTTACAGCAGCATCGGAGGTCTCGACAGGCAGATTCGCGAAATG CGTGAGTCAATCGAGTTACCGTTACGCAATCCATATCTTTTCAAACGTGTTGGTGTCAAG CCACCTAAGGGTGTTTTACTTTATGGCCCACCAGGAACGGGCAAAACCTTGATGGCTAAG GCTTTGGCCTCTTCCATGGATTGCCACTTCCTGAAGGTTGTAGCTTCTGCTGTGGTGGAC AAGTACATCGGAGAATCTGCCAGAATAATCAGGGAAATGTTTGGTTACGCAAAGGACCAT CAGCCATGTATCATATTTATGGATGAAATTGATGCCATTGGAGGTAAGCGCTTTTCACAA GGAACGTCGGCTGATCGTGAAATCCAACGCACATTGATGGAGTTACTAACCCATCTAGAT GGTTTCGACGAGTTAGGGCAGGTTAAGATAATCATGGCAACAAATCGACCGGATGTTTTG GATCCCGCTCTTATGCGCCCTGGACGCATCGACAGAAAAATTGAGATACCTTTACCCAAT GAATCATCACGTGTGGACATACTGAAGATCCATAGTAGCAAGTTGAACAAGAAGGGTGAT ATAGACTATGTAGCAATATGCCGTTTATGCGATGGATTTAATGGCGCAGACATGCGCAAC GTATGTACGGAAGCTGGTATTTTCGCCATACGTGCTATGAGAGACTACGTAGTTGAAGAA GACTTCTTCAAGGCTGCTCGTAAGCTGACCGAGACAAAGAAGCTTGAGGGTACGCTAACC TATGAAAAGGTATAAAATGCAATTTTGGAAACGTTAAACTAAATATATTTGTTAC
  • Download Fasta

  • Fasta :-

    MATESTNPEPEGEDREVIRQYVKKVREHREIDTRLKKLRADIKTLSVKDDQTEDDLKALQ SIGQIVGHVLRPIDNGKLIVKASSGPRYVVFCKTKIDPSTLVSGTRVALDMTTLTIMRKL PREVNPVVFNMLTDTQRPNEENKPLSYSSIGGLDRQIREMRESIELPLRNPYLFKRVGVK PPKGVLLYGPPGTGKTLMAKALASSMDCHFLKVVASAVVDKYIGESARIIREMFGYAKDH QPCIIFMDEIDAIGGKRFSQGTSADREIQRTLMELLTHLDGFDELGQVKIIMATNRPDVL DPALMRPGRIDRKIEIPLPNESSRVDILKIHSSKLNKKGDIDYVAICRLCDGFNGADMRN VCTEAGIFAIRAMRDYVVEEDFFKAARKLTETKKLEGTLTYEKV

    No Results
  • title: ATP binding site
  • coordinates: P190,P191,G192,T193,G194,K195,T196,L197,D248,N295
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
BBOV_II00390046 SIKTLSVKDD0.997unspBBOV_II003900163 SEMRESIELP0.991unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India