BBOV_II004930 | 26s proteasome aaa-ATPase subunit Rpt3, putative

_IDPredictionOTHERSPmTPCS_Position
BBOV_II004930OTHER0.9999480.0000150.000037
No Results

  • Fasta :-

    >BBOV_II004930 MSNMGTKYLPIKMSSTQEDLYTKLKQLEKQLDLCETQENYVREEYKNLKLEMIRAREEIK RIQSVPLVIGQFLDMVDKNHAIVSSTAGSNYYVRILSTINREQLVPNTSVALHRHSHSIV DLLPPEADSSIQMMQISDRPDVSYADIGGLDAQKQEVREAVELPLTCPELYHQIGIDPPV GVLLYGPPGTGKTMLAKAVAHHTGASFIRVVGSEFVQKYLGEGPRMVRDIFRLARENAPA ILFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQNAAVKVIMATNRADTLDPA LLRPGRLDRKIEFPLPDRRQRRLIFQTITSKMNLASDVDLESFVARPEKVSAADIAAICQ EAGIQAIRKNRYVVTNRDFEKGWKRHIRKHDRDYIFYGI
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/BBOV_II004930.fa Sequence name : BBOV_II004930 Sequence length : 399 VALUES OF COMPUTED PARAMETERS Coef20 : 3.581 CoefTot : -0.717 ChDiff : 0 ZoneTo : 17 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.888 0.947 0.041 0.524 MesoH : -0.499 0.276 -0.362 0.235 MuHd_075 : 30.875 15.257 9.984 5.464 MuHd_095 : 20.311 10.634 4.809 3.242 MuHd_100 : 18.273 10.111 5.091 2.960 MuHd_105 : 9.310 6.245 3.480 2.033 Hmax_075 : 10.617 3.383 0.716 2.812 Hmax_095 : 8.313 2.800 -0.913 1.934 Hmax_100 : 6.100 1.900 -1.180 1.740 Hmax_105 : 5.133 0.000 -1.766 0.800 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7285 0.2715 DFMC : 0.6251 0.3749
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 399 BBOV_II004930 MSNMGTKYLPIKMSSTQEDLYTKLKQLEKQLDLCETQENYVREEYKNLKLEMIRAREEIKRIQSVPLVIGQFLDMVDKNH 80 AIVSSTAGSNYYVRILSTINREQLVPNTSVALHRHSHSIVDLLPPEADSSIQMMQISDRPDVSYADIGGLDAQKQEVREA 160 VELPLTCPELYHQIGIDPPVGVLLYGPPGTGKTMLAKAVAHHTGASFIRVVGSEFVQKYLGEGPRMVRDIFRLARENAPA 240 ILFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQNAAVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQ 320 RRLIFQTITSKMNLASDVDLESFVARPEKVSAADIAAICQEAGIQAIRKNRYVVTNRDFEKGWKRHIRKHDRDYIFYGI 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ............................................................................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0

  • Fasta :-

    >BBOV_II004930 GATGTCCAATATGGGAACTAAGTATCTGCCCATAAAGATGTCGTCTACACAGGAGGATCT TTACACAAAGCTGAAACAGCTGGAAAAGCAACTTGATTTATGTGAAACTCAGGAGAACTA TGTTAGGGAAGAGTACAAAAATTTGAAGCTGGAGATGATACGTGCTCGAGAGGAGATTAA GAGAATCCAGAGCGTCCCGCTTGTTATTGGCCAATTTCTCGATATGGTTGATAAAAACCA CGCAATTGTATCGTCGACGGCTGGATCGAACTATTACGTTCGTATCCTGTCTACAATCAA TCGAGAGCAGCTCGTGCCAAACACCAGCGTGGCTCTCCACCGACATAGCCACAGTATCGT TGATTTGCTACCTCCAGAAGCTGATTCTTCAATTCAGATGATGCAAATATCGGATAGGCC AGATGTATCGTATGCGGACATTGGTGGGCTAGATGCCCAAAAGCAGGAGGTTCGTGAGGC AGTGGAACTGCCTCTTACATGCCCAGAATTGTACCATCAAATTGGTATAGACCCACCTGT AGGAGTATTGCTTTATGGCCCGCCAGGTACTGGTAAAACAATGCTGGCCAAGGCGGTTGC ACATCACACTGGCGCCAGCTTTATACGCGTTGTCGGAAGCGAATTTGTACAGAAGTATCT TGGAGAAGGGCCAAGGATGGTGAGAGATATCTTCCGATTGGCCCGCGAGAATGCACCTGC CATTCTGTTCATCGACGAGGTTGATTCTATTGCTACAAAGCGTTTCGATGCGCAAACTGG CGCTGACAGGGAGGTACAGCGTATATTGTTGGAGTTATTGAACCAGATGGATGGTTTCGA TCAGAACGCTGCTGTAAAGGTTATAATGGCTACTAACAGGGCTGATACATTGGACCCTGC GTTACTGAGACCAGGGCGATTGGATAGGAAAATTGAATTCCCACTGCCTGACAGAAGGCA AAGAAGATTAATATTCCAGACAATCACTAGCAAGATGAACCTTGCAAGTGACGTAGACCT TGAAAGCTTCGTTGCTAGACCAGAGAAGGTATCTGCAGCTGATATCGCCGCCATTTGTCA GGAAGCTGGTATACAGGCGATTCGTAAAAACAGATATGTCGTGACGAACAGGGACTTTGA GAAGGGATGGAAGCGACACATCAGGAAGCACGACAGAGATTACATCTTCTACGGCATATA G
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  • Fasta :-

    MSNMGTKYLPIKMSSTQEDLYTKLKQLEKQLDLCETQENYVREEYKNLKLEMIRAREEIK RIQSVPLVIGQFLDMVDKNHAIVSSTAGSNYYVRILSTINREQLVPNTSVALHRHSHSIV DLLPPEADSSIQMMQISDRPDVSYADIGGLDAQKQEVREAVELPLTCPELYHQIGIDPPV GVLLYGPPGTGKTMLAKAVAHHTGASFIRVVGSEFVQKYLGEGPRMVRDIFRLARENAPA ILFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQNAAVKVIMATNRADTLDPA LLRPGRLDRKIEFPLPDRRQRRLIFQTITSKMNLASDVDLESFVARPEKVSAADIAAICQ EAGIQAIRKNRYVVTNRDFEKGWKRHIRKHDRDYIFYGI

  • title: ATP binding site
  • coordinates: P187,P188,G189,T190,G191,K192,T193,M194,D245,N292
No Results
No Results
No Results

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India