BBOV_II005180 | u4/u6.u5 tri-snRNP-associated 65 kDa protein, putative

_IDPredictionOTHERSPmTPCS_Position
BBOV_II005180OTHER0.9999370.0000140.000050
No Results

  • Fasta :-

    >BBOV_II005180 MASEDTVKRKVDSDPGHDDQPLPRKRKEPSEIPAKKHVKCPYLGTINRHLLDFDFEKVCS ITLSNKHVYACLVCGRYFEGRGKNTYAYTHALEERHYVFINLHDCKVYSLPDNYHVEDAS LNDIALFLKPKYTKEYVENIDTKIVYGKGLDGTDFIPGCIGLNNLKQTDYFNVIIQVLCT VATVRNYLLLLDIDRIQPPDNVISTLVELIRKIYNTKNFKGIVSPHEFLQAVGVASKGLY KIGVHNDPVALLTWLLNRLDTKLRNKKTKESIVAKAFGGQLNVYTQDGDNWTQKITPFKM ITLDVPNAPIFKDDKEKNIIPQVSIFQLLQKFQGESAHTSPNGELCKYKIWKLPDYLVIN IKRFTKNNFFIEKNPTIVSFPMKNLDMGIYIDDKSPFKGDINARYDLACSVCHQGNPESG RYKIHVLHPPTGDWYELEDLLVTSVLPQFVAQSGNGATTHNDNENIDMFD
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/BBOV_II005180.fa Sequence name : BBOV_II005180 Sequence length : 470 VALUES OF COMPUTED PARAMETERS Coef20 : 2.797 CoefTot : 0.253 ChDiff : 1 ZoneTo : 3 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.747 1.606 0.129 0.470 MesoH : -0.783 0.483 -0.361 0.224 MuHd_075 : 47.037 23.487 11.083 8.630 MuHd_095 : 11.079 9.902 3.744 3.495 MuHd_100 : 9.259 5.313 1.459 2.092 MuHd_105 : 17.526 4.475 4.122 1.776 Hmax_075 : 0.175 3.762 -2.249 2.266 Hmax_095 : -14.612 -1.925 -5.333 -0.340 Hmax_100 : -16.000 -2.200 -6.176 -0.180 Hmax_105 : -7.933 -3.400 -3.083 -0.100 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9261 0.0739 DFMC : 0.9363 0.0637
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 470 BBOV_II005180 MASEDTVKRKVDSDPGHDDQPLPRKRKEPSEIPAKKHVKCPYLGTINRHLLDFDFEKVCSITLSNKHVYACLVCGRYFEG 80 RGKNTYAYTHALEERHYVFINLHDCKVYSLPDNYHVEDASLNDIALFLKPKYTKEYVENIDTKIVYGKGLDGTDFIPGCI 160 GLNNLKQTDYFNVIIQVLCTVATVRNYLLLLDIDRIQPPDNVISTLVELIRKIYNTKNFKGIVSPHEFLQAVGVASKGLY 240 KIGVHNDPVALLTWLLNRLDTKLRNKKTKESIVAKAFGGQLNVYTQDGDNWTQKITPFKMITLDVPNAPIFKDDKEKNII 320 PQVSIFQLLQKFQGESAHTSPNGELCKYKIWKLPDYLVINIKRFTKNNFFIEKNPTIVSFPMKNLDMGIYIDDKSPFKGD 400 INARYDLACSVCHQGNPESGRYKIHVLHPPTGDWYELEDLLVTSVLPQFVAQSGNGATTHNDNENIDMFD 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ...................................................................... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ BBOV_II005180 8 ASEDTVK|RK 0.061 . BBOV_II005180 9 SEDTVKR|KV 0.233 . BBOV_II005180 10 EDTVKRK|VD 0.099 . BBOV_II005180 24 DDQPLPR|KR 0.068 . BBOV_II005180 25 DQPLPRK|RK 0.081 . BBOV_II005180 26 QPLPRKR|KE 0.142 . BBOV_II005180 27 PLPRKRK|EP 0.223 . BBOV_II005180 35 PSEIPAK|KH 0.057 . BBOV_II005180 36 SEIPAKK|HV 0.139 . BBOV_II005180 39 PAKKHVK|CP 0.064 . BBOV_II005180 48 YLGTINR|HL 0.082 . BBOV_II005180 57 LDFDFEK|VC 0.066 . BBOV_II005180 66 SITLSNK|HV 0.082 . BBOV_II005180 76 ACLVCGR|YF 0.096 . BBOV_II005180 81 GRYFEGR|GK 0.128 . BBOV_II005180 83 YFEGRGK|NT 0.066 . BBOV_II005180 95 THALEER|HY 0.092 . BBOV_II005180 106 INLHDCK|VY 0.059 . BBOV_II005180 129 DIALFLK|PK 0.066 . BBOV_II005180 131 ALFLKPK|YT 0.075 . BBOV_II005180 134 LKPKYTK|EY 0.063 . BBOV_II005180 143 VENIDTK|IV 0.088 . BBOV_II005180 148 TKIVYGK|GL 0.084 . BBOV_II005180 166 IGLNNLK|QT 0.058 . BBOV_II005180 185 CTVATVR|NY 0.070 . BBOV_II005180 195 LLLDIDR|IQ 0.066 . BBOV_II005180 211 TLVELIR|KI 0.084 . BBOV_II005180 212 LVELIRK|IY 0.069 . BBOV_II005180 217 RKIYNTK|NF 0.062 . BBOV_II005180 220 YNTKNFK|GI 0.058 . BBOV_II005180 237 AVGVASK|GL 0.071 . BBOV_II005180 241 ASKGLYK|IG 0.058 . BBOV_II005180 258 LTWLLNR|LD 0.073 . BBOV_II005180 262 LNRLDTK|LR 0.062 . BBOV_II005180 264 RLDTKLR|NK 0.094 . BBOV_II005180 266 DTKLRNK|KT 0.060 . BBOV_II005180 267 TKLRNKK|TK 0.246 . BBOV_II005180 269 LRNKKTK|ES 0.094 . BBOV_II005180 275 KESIVAK|AF 0.128 . BBOV_II005180 294 GDNWTQK|IT 0.074 . BBOV_II005180 299 QKITPFK|MI 0.069 . BBOV_II005180 312 PNAPIFK|DD 0.066 . BBOV_II005180 315 PIFKDDK|EK 0.059 . BBOV_II005180 317 FKDDKEK|NI 0.075 . BBOV_II005180 331 IFQLLQK|FQ 0.082 . BBOV_II005180 347 PNGELCK|YK 0.074 . BBOV_II005180 349 GELCKYK|IW 0.059 . BBOV_II005180 352 CKYKIWK|LP 0.064 . BBOV_II005180 362 YLVINIK|RF 0.058 . BBOV_II005180 363 LVINIKR|FT 0.206 . BBOV_II005180 366 NIKRFTK|NN 0.131 . BBOV_II005180 373 NNFFIEK|NP 0.059 . BBOV_II005180 383 IVSFPMK|NL 0.088 . BBOV_II005180 394 GIYIDDK|SP 0.073 . BBOV_II005180 398 DDKSPFK|GD 0.062 . BBOV_II005180 404 KGDINAR|YD 0.087 . BBOV_II005180 421 GNPESGR|YK 0.141 . BBOV_II005180 423 PESGRYK|IH 0.064 . ____________________________^_________________

  • Fasta :-

    >BBOV_II005180 ATGGCATCAGAAGACACTGTAAAACGGAAGGTAGATTCCGACCCTGGGCATGATGACCAA CCATTGCCAAGGAAAAGGAAGGAGCCTTCAGAAATCCCTGCTAAAAAGCATGTTAAGTGC CCATATCTAGGAACTATAAACAGGCACTTGTTGGATTTTGATTTTGAAAAGGTTTGCTCC ATTACGTTATCGAACAAACATGTCTACGCCTGCTTAGTTTGCGGGCGATACTTTGAAGGC AGAGGCAAAAATACATACGCTTATACCCACGCACTGGAAGAACGCCATTATGTATTCATT AATTTACACGACTGCAAGGTCTACTCTCTACCGGATAACTATCACGTGGAAGATGCTTCA TTAAATGATATTGCACTATTTTTGAAACCAAAGTATACCAAGGAGTACGTGGAGAATATT GATACCAAGATAGTGTACGGTAAAGGTTTGGACGGTACAGATTTTATACCGGGATGCATT GGACTGAATAACCTGAAACAGACGGATTACTTCAATGTTATAATACAGGTGCTCTGCACA GTGGCTACTGTTAGGAATTATCTTCTACTACTAGATATCGACAGGATACAACCACCGGAT AACGTAATATCGACGTTGGTGGAACTCATAAGGAAAATATATAACACCAAGAATTTTAAA GGTATAGTATCGCCACATGAATTCTTACAAGCTGTGGGAGTTGCATCCAAGGGGTTATAC AAAATTGGAGTGCACAATGATCCTGTTGCCCTGTTAACATGGTTGCTAAATAGATTGGAT ACTAAACTACGTAATAAAAAAACGAAAGAGTCTATTGTAGCCAAAGCATTTGGAGGACAG CTGAATGTATATACACAGGATGGTGATAACTGGACCCAAAAGATTACACCATTCAAAATG ATAACCCTGGATGTGCCTAATGCACCCATTTTCAAGGATGACAAGGAGAAGAATATTATA CCGCAAGTGTCTATATTCCAACTACTACAGAAGTTCCAAGGTGAAAGCGCGCATACGTCA CCAAATGGAGAGCTATGTAAATACAAAATATGGAAGTTACCAGACTACCTAGTTATCAAC ATCAAAAGGTTTACTAAGAATAACTTCTTCATTGAGAAGAATCCTACTATCGTCTCATTC CCAATGAAGAACCTGGATATGGGCATATATATCGATGATAAGTCACCTTTCAAGGGAGAT ATAAACGCAAGATATGATCTGGCATGTAGCGTATGCCACCAAGGAAACCCAGAATCCGGA AGATACAAGATACACGTACTACACCCACCCACAGGTGACTGGTATGAACTTGAAGACCTA TTGGTAACATCGGTACTGCCACAATTTGTGGCGCAATCTGGCAATGGTGCAACGACACAT AACGATAACGAAAATATAGACATGTTCGATTAA
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  • Fasta :-

    MASEDTVKRKVDSDPGHDDQPLPRKRKEPSEIPAKKHVKCPYLGTINRHLLDFDFEKVCS ITLSNKHVYACLVCGRYFEGRGKNTYAYTHALEERHYVFINLHDCKVYSLPDNYHVEDAS LNDIALFLKPKYTKEYVENIDTKIVYGKGLDGTDFIPGCIGLNNLKQTDYFNVIIQVLCT VATVRNYLLLLDIDRIQPPDNVISTLVELIRKIYNTKNFKGIVSPHEFLQAVGVASKGLY KIGVHNDPVALLTWLLNRLDTKLRNKKTKESIVAKAFGGQLNVYTQDGDNWTQKITPFKM ITLDVPNAPIFKDDKEKNIIPQVSIFQLLQKFQGESAHTSPNGELCKYKIWKLPDYLVIN IKRFTKNNFFIEKNPTIVSFPMKNLDMGIYIDDKSPFKGDINARYDLACSVCHQGNPESG RYKIHVLHPPTGDWYELEDLLVTSVLPQFVAQSGNGATTHNDNENIDMFD

  • title: Active Site
  • coordinates: N164,D169,R421,D439
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Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India