BBOV_II006100 | rhomboid 4

  • Computed_GO_Component_IDs:  GO:0016021      

  • Computed_GO_Components:  integral component of membrane      

  • Computed_GO_Function_IDs:  GO:0004252      

  • Computed_GO_Functions:  serine-type endopeptidase activity      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
BBOV_II006100OTHER0.8444670.1456860.009847
No Results

  • Fasta :-

    >BBOV_II006100 MMYKQDWGFMRTMGLFLISGIGGNLTGAVLSPCGLTVGSSGAMYGLYGAMIPYCIEYWNT IPRPVFLFCYNIITLIIGFLMGLAPNVDNYCHIGGCVFGMLWGFATIKSVSSCDKCTIVE RSLLCPLISWALPQKWKAKLRLIIVFKKDRGDRNRQKDMAQKHAVQNGVTPRRIALIKKK FERQGAPPCRMRLREWIFRITSLLMMVLLFTILGLFLSKPELYAKFKPPGEYKLSGWQTC ECCFITNIEKLFSGHRDIPAQYLNRKLFWCFNNVDDAKHFCGDDYAKTAPMDNILKSSHD AALGLINTVTEAIK
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/BBOV_II006100.fa Sequence name : BBOV_II006100 Sequence length : 314 VALUES OF COMPUTED PARAMETERS Coef20 : 3.930 CoefTot : -5.512 ChDiff : 17 ZoneTo : 113 KR : 4 DE : 3 CleavSite : 13 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.576 2.518 0.435 0.849 MesoH : 1.119 1.089 0.136 0.530 MuHd_075 : 23.688 19.651 6.086 5.742 MuHd_095 : 36.054 27.946 11.304 8.619 MuHd_100 : 34.466 27.225 10.608 7.986 MuHd_105 : 35.157 26.011 10.082 8.471 Hmax_075 : 17.500 16.300 5.598 5.710 Hmax_095 : 16.450 27.500 4.401 6.877 Hmax_100 : 16.200 28.100 4.949 7.890 Hmax_105 : 13.800 21.817 3.961 5.770 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9875 0.0125 DFMC : 0.9859 0.0141
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 314 BBOV_II006100 MMYKQDWGFMRTMGLFLISGIGGNLTGAVLSPCGLTVGSSGAMYGLYGAMIPYCIEYWNTIPRPVFLFCYNIITLIIGFL 80 MGLAPNVDNYCHIGGCVFGMLWGFATIKSVSSCDKCTIVERSLLCPLISWALPQKWKAKLRLIIVFKKDRGDRNRQKDMA 160 QKHAVQNGVTPRRIALIKKKFERQGAPPCRMRLREWIFRITSLLMMVLLFTILGLFLSKPELYAKFKPPGEYKLSGWQTC 240 ECCFITNIEKLFSGHRDIPAQYLNRKLFWCFNNVDDAKHFCGDDYAKTAPMDNILKSSHDAALGLINTVTEAIK 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .......................................................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ BBOV_II006100 4 ---MMYK|QD 0.066 . BBOV_II006100 11 QDWGFMR|TM 0.105 . BBOV_II006100 63 YWNTIPR|PV 0.103 . BBOV_II006100 108 WGFATIK|SV 0.099 . BBOV_II006100 115 SVSSCDK|CT 0.074 . BBOV_II006100 121 KCTIVER|SL 0.101 . BBOV_II006100 135 SWALPQK|WK 0.064 . BBOV_II006100 137 ALPQKWK|AK 0.062 . BBOV_II006100 139 PQKWKAK|LR 0.066 . BBOV_II006100 141 KWKAKLR|LI 0.098 . BBOV_II006100 147 RLIIVFK|KD 0.063 . BBOV_II006100 148 LIIVFKK|DR 0.140 . BBOV_II006100 150 IVFKKDR|GD 0.091 . BBOV_II006100 153 KKDRGDR|NR 0.178 . BBOV_II006100 155 DRGDRNR|QK 0.137 . BBOV_II006100 157 GDRNRQK|DM 0.082 . BBOV_II006100 162 QKDMAQK|HA 0.076 . BBOV_II006100 172 QNGVTPR|RI 0.092 . BBOV_II006100 173 NGVTPRR|IA 0.125 . BBOV_II006100 178 RRIALIK|KK 0.070 . BBOV_II006100 179 RIALIKK|KF 0.119 . BBOV_II006100 180 IALIKKK|FE 0.121 . BBOV_II006100 183 IKKKFER|QG 0.094 . BBOV_II006100 190 QGAPPCR|MR 0.077 . BBOV_II006100 192 APPCRMR|LR 0.101 . BBOV_II006100 194 PCRMRLR|EW 0.099 . BBOV_II006100 199 LREWIFR|IT 0.100 . BBOV_II006100 219 LGLFLSK|PE 0.053 . BBOV_II006100 225 KPELYAK|FK 0.075 . BBOV_II006100 227 ELYAKFK|PP 0.072 . BBOV_II006100 233 KPPGEYK|LS 0.073 . BBOV_II006100 250 FITNIEK|LF 0.059 . BBOV_II006100 256 KLFSGHR|DI 0.095 . BBOV_II006100 265 PAQYLNR|KL 0.092 . BBOV_II006100 266 AQYLNRK|LF 0.069 . BBOV_II006100 278 NNVDDAK|HF 0.067 . BBOV_II006100 287 CGDDYAK|TA 0.058 . BBOV_II006100 296 PMDNILK|SS 0.071 . BBOV_II006100 314 TVTEAIK|-- 0.061 . ____________________________^_________________

  • Fasta :-

    >BBOV_II006100 ATGATGTACAAACAGGATTGGGGTTTTATGAGGACCATGGGATTGTTCTTGATAAGTGGA ATTGGTGGGAATTTAACAGGTGCTGTATTATCTCCATGTGGACTCACGGTAGGATCTTCA GGAGCTATGTATGGTCTCTATGGAGCCATGATACCTTATTGCATTGAATATTGGAATACG ATACCTCGTCCAGTGTTTCTTTTCTGTTACAACATTATCACCCTGATCATAGGATTCTTG ATGGGTCTTGCACCAAACGTCGATAACTATTGCCACATTGGTGGCTGTGTTTTCGGAATG CTCTGGGGATTTGCTACCATTAAAAGTGTCTCCAGTTGTGATAAATGTACAATTGTTGAA CGTTCTCTACTATGTCCACTCATATCGTGGGCATTGCCACAAAAGTGGAAAGCAAAGCTA CGGCTAATCATCGTGTTCAAAAAGGATCGTGGAGATCGTAATAGACAAAAGGATATGGCC CAAAAACATGCGGTCCAAAACGGTGTTACTCCGCGTCGCATTGCCTTAATAAAAAAGAAA TTCGAAAGGCAAGGTGCTCCTCCATGTCGGATGAGATTGAGAGAATGGATTTTTAGGATC ACTAGTCTTTTAATGATGGTTCTGCTTTTTACTATTTTAGGATTATTTCTATCTAAACCC GAACTATATGCAAAGTTCAAGCCACCTGGTGAATATAAACTAAGCGGGTGGCAAACTTGC GAGTGTTGCTTCATAACGAACATTGAAAAACTATTTAGCGGACATAGAGATATACCTGCT CAATACCTTAACCGAAAATTATTTTGGTGTTTTAACAACGTTGATGATGCAAAACATTTC TGTGGAGATGATTACGCTAAAACGGCACCAATGGATAATATATTGAAATCCTCCCATGAT GCGGCCTTAGGACTGATAAATACTGTAACTGAAGCTATTAAGTAA
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  • Fasta :-

    MMYKQDWGFMRTMGLFLISGIGGNLTGAVLSPCGLTVGSSGAMYGLYGAMIPYCIEYWNT IPRPVFLFCYNIITLIIGFLMGLAPNVDNYCHIGGCVFGMLWGFATIKSVSSCDKCTIVE RSLLCPLISWALPQKWKAKLRLIIVFKKDRGDRNRQKDMAQKHAVQNGVTPRRIALIKKK FERQGAPPCRMRLREWIFRITSLLMMVLLFTILGLFLSKPELYAKFKPPGEYKLSGWQTC ECCFITNIEKLFSGHRDIPAQYLNRKLFWCFNNVDDAKHFCGDDYAKTAPMDNILKSSHD AALGLINTVTEAIK

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
BBOV_II006100111 SIKSVSSCDK0.996unspBBOV_II006100297 SNILKSSHDA0.991unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India