BBOV_III000310 | proteasome A-type and B-type family protein

_IDPredictionOTHERSPmTPCS_Position
BBOV_III000310OTHER0.9998220.0000580.000120
No Results

  • Fasta :-

    >BBOV_III000310 MAEDGEYNFSLTTFSPSGKLVQIENALAAVSKGAPTLGIKSKNGVVIASERATLSPLVES DSINKIDYFTRNIGVVAAGMPADFRIVLKKGRKQAIKYKLLYGDDIPGAELVKEVASIMQ EYTHSGGVRPFGISLLLASYDSDGPQLYQIDPSGAYFGWRATAIGDRMQNNMTFLEKRYN PDLELEDAIHIAILTLKEGFEGEMTTDNIEIGIVGSDGIFKILSKDIVNDYLNELL
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/BBOV_III000310.fa Sequence name : BBOV_III000310 Sequence length : 236 VALUES OF COMPUTED PARAMETERS Coef20 : 3.366 CoefTot : 0.141 ChDiff : -9 ZoneTo : 2 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.582 1.271 -0.063 0.459 MesoH : -0.603 0.347 -0.375 0.193 MuHd_075 : 13.582 9.513 3.804 2.327 MuHd_095 : 14.726 5.643 2.854 1.915 MuHd_100 : 11.053 2.274 2.003 0.683 MuHd_105 : 12.453 6.296 2.766 1.995 Hmax_075 : 15.167 6.417 1.064 3.687 Hmax_095 : 10.937 2.012 0.222 2.433 Hmax_100 : 11.900 3.100 0.373 2.960 Hmax_105 : 9.217 2.500 0.235 2.600 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9583 0.0417 DFMC : 0.9431 0.0569
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 236 BBOV_III000310 MAEDGEYNFSLTTFSPSGKLVQIENALAAVSKGAPTLGIKSKNGVVIASERATLSPLVESDSINKIDYFTRNIGVVAAGM 80 PADFRIVLKKGRKQAIKYKLLYGDDIPGAELVKEVASIMQEYTHSGGVRPFGISLLLASYDSDGPQLYQIDPSGAYFGWR 160 ATAIGDRMQNNMTFLEKRYNPDLELEDAIHIAILTLKEGFEGEMTTDNIEIGIVGSDGIFKILSKDIVNDYLNELL 240 ................................................................................ 80 ................................................................................ 160 ............................................................................ 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ BBOV_III000310 19 TFSPSGK|LV 0.085 . BBOV_III000310 32 ALAAVSK|GA 0.080 . BBOV_III000310 40 APTLGIK|SK 0.071 . BBOV_III000310 42 TLGIKSK|NG 0.067 . BBOV_III000310 51 VVIASER|AT 0.075 . BBOV_III000310 65 ESDSINK|ID 0.052 . BBOV_III000310 71 KIDYFTR|NI 0.121 . BBOV_III000310 85 GMPADFR|IV 0.107 . BBOV_III000310 89 DFRIVLK|KG 0.060 . BBOV_III000310 90 FRIVLKK|GR 0.148 . BBOV_III000310 92 IVLKKGR|KQ 0.080 . BBOV_III000310 93 VLKKGRK|QA 0.085 . BBOV_III000310 97 GRKQAIK|YK 0.074 . BBOV_III000310 99 KQAIKYK|LL 0.067 . BBOV_III000310 113 PGAELVK|EV 0.067 . BBOV_III000310 129 THSGGVR|PF 0.143 . BBOV_III000310 160 GAYFGWR|AT 0.130 . BBOV_III000310 167 ATAIGDR|MQ 0.078 . BBOV_III000310 177 NMTFLEK|RY 0.061 . BBOV_III000310 178 MTFLEKR|YN 0.175 . BBOV_III000310 197 IAILTLK|EG 0.071 . BBOV_III000310 221 GSDGIFK|IL 0.067 . BBOV_III000310 225 IFKILSK|DI 0.061 . ____________________________^_________________

  • Fasta :-

    >BBOV_III000310 ATGGCTGAAGACGGGGAATATAATTTCTCTTTGACGACTTTCAGTCCTAGTGGGAAGCTT GTACAGATCGAAAATGCTCTGGCTGCTGTGTCTAAGGGCGCGCCTACTCTGGGCATTAAA TCAAAGAATGGTGTCGTGATTGCTTCGGAGCGTGCAACCCTTTCCCCTCTTGTTGAGTCT GACTCTATAAACAAGATTGATTATTTCACTCGCAACATCGGTGTAGTGGCCGCTGGTATG CCAGCAGACTTTAGGATAGTTCTAAAGAAGGGGCGTAAGCAGGCCATAAAATACAAATTG CTGTATGGTGATGACATTCCTGGAGCTGAGCTGGTAAAGGAGGTTGCCAGTATTATGCAG GAGTACACCCATTCTGGTGGTGTGCGTCCTTTTGGAATATCTCTTCTTCTTGCATCATAC GATTCGGATGGTCCACAGTTATACCAAATTGATCCATCGGGTGCCTATTTTGGCTGGCGT GCAACTGCAATCGGTGATCGTATGCAAAACAACATGACATTCCTGGAGAAGCGTTACAAC CCTGATTTGGAACTTGAGGATGCCATTCACATCGCTATATTGACGTTGAAGGAGGGTTTC GAGGGTGAGATGACAACAGATAACATAGAAATAGGCATTGTGGGTTCAGATGGAATCTTC AAGATTCTATCAAAAGACATTGTAAACGACTATCTCAACGAGCTGCTATAA
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  • Fasta :-

    MAEDGEYNFSLTTFSPSGKLVQIENALAAVSKGAPTLGIKSKNGVVIASERATLSPLVES DSINKIDYFTRNIGVVAAGMPADFRIVLKKGRKQAIKYKLLYGDDIPGAELVKEVASIMQ EYTHSGGVRPFGISLLLASYDSDGPQLYQIDPSGAYFGWRATAIGDRMQNNMTFLEKRYN PDLELEDAIHIAILTLKEGFEGEMTTDNIEIGIVGSDGIFKILSKDIVNDYLNELL

  • title: active site
  • coordinates: A34,E50,A52,K65,D166
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Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India