BBOV_III000530 | rhomboid family protein

  • Computed_GO_Component_IDs:  GO:0016021      

  • Computed_GO_Components:  integral component of membrane      

  • Computed_GO_Function_IDs:  GO:0004252      

  • Computed_GO_Functions:  serine-type endopeptidase activity      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
BBOV_III000530SP0.4252980.5727600.001942CS pos: 36-37. ATS-EV. Pr: 0.5419
No Results

  • Fasta :-

    >BBOV_III000530 MCKCCAVVPSQHVNVSRKQYTMLMFVFFYMCIFATSEVVSLHPTAVVHLKVDAVNAKTVP VYRKRSVKWQNPTCAESPCYGQRLLTFIRPKTLIRAPQQVEHASRYETAPLYSSSGIRSY ARCDLQGSPTALAATGNTLAVASVASQINYLRDWVSAKSNAVSRALQNARKTVPKPGIYL YRTCNDIMVKTERYCRTLVTKLHGLYLKAVTLKLKDLISFGKDPVLNIVRVVAMVYALDW WTGLTNIKYNFDLSPFDVFMKGQYYRLFTSLFLHNGVVHLLQNIRSLWAIGYEAADLLGP RRMLTIYLVSGLVANYISYVYYFAYKNAVPAHVFNATQVAVKGLGQMGMSTHHLVEKVVD RIRAKQGALSLPLFMASYLNDTIFHTVDTYLAPLIPMLNRRQALPDCRDVNCAVQQYIKR KCSRYRACGASAAIYGLMGAVCAYYARFGSASDRRRVTEIITSAIGQNIVALFGAKVDHV SHLAGFLTGMCLTMAF
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/BBOV_III000530.fa Sequence name : BBOV_III000530 Sequence length : 496 VALUES OF COMPUTED PARAMETERS Coef20 : 4.024 CoefTot : -2.992 ChDiff : 32 ZoneTo : 100 KR : 13 DE : 3 CleavSite : 93 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.276 1.994 0.449 0.711 MesoH : -0.001 0.646 -0.166 0.325 MuHd_075 : 26.607 18.382 7.652 4.969 MuHd_095 : 28.535 17.802 8.810 5.688 MuHd_100 : 30.680 14.807 9.356 5.762 MuHd_105 : 32.960 20.352 8.923 7.621 Hmax_075 : 7.117 16.100 5.935 3.168 Hmax_095 : 2.625 14.612 0.347 3.386 Hmax_100 : 10.200 11.300 2.882 2.840 Hmax_105 : 15.400 14.700 4.513 5.238 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8752 0.1248 DFMC : 0.5910 0.4090
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 496 BBOV_III000530 MCKCCAVVPSQHVNVSRKQYTMLMFVFFYMCIFATSEVVSLHPTAVVHLKVDAVNAKTVPVYRKRSVKWQNPTCAESPCY 80 GQRLLTFIRPKTLIRAPQQVEHASRYETAPLYSSSGIRSYARCDLQGSPTALAATGNTLAVASVASQINYLRDWVSAKSN 160 AVSRALQNARKTVPKPGIYLYRTCNDIMVKTERYCRTLVTKLHGLYLKAVTLKLKDLISFGKDPVLNIVRVVAMVYALDW 240 WTGLTNIKYNFDLSPFDVFMKGQYYRLFTSLFLHNGVVHLLQNIRSLWAIGYEAADLLGPRRMLTIYLVSGLVANYISYV 320 YYFAYKNAVPAHVFNATQVAVKGLGQMGMSTHHLVEKVVDRIRAKQGALSLPLFMASYLNDTIFHTVDTYLAPLIPMLNR 400 RQALPDCRDVNCAVQQYIKRKCSRYRACGASAAIYGLMGAVCAYYARFGSASDRRRVTEIITSAIGQNIVALFGAKVDHV 480 SHLAGFLTGMCLTMAF 560 ................................................................P............... 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................ 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ BBOV_III000530 3 ----MCK|CC 0.066 . BBOV_III000530 17 QHVNVSR|KQ 0.104 . BBOV_III000530 18 HVNVSRK|QY 0.104 . BBOV_III000530 50 TAVVHLK|VD 0.067 . BBOV_III000530 57 VDAVNAK|TV 0.082 . BBOV_III000530 63 KTVPVYR|KR 0.084 . BBOV_III000530 64 TVPVYRK|RS 0.074 . BBOV_III000530 65 VPVYRKR|SV 0.579 *ProP* BBOV_III000530 68 YRKRSVK|WQ 0.141 . BBOV_III000530 83 SPCYGQR|LL 0.093 . BBOV_III000530 89 RLLTFIR|PK 0.075 . BBOV_III000530 91 LTFIRPK|TL 0.070 . BBOV_III000530 95 RPKTLIR|AP 0.119 . BBOV_III000530 105 QVEHASR|YE 0.095 . BBOV_III000530 118 YSSSGIR|SY 0.138 . BBOV_III000530 122 GIRSYAR|CD 0.105 . BBOV_III000530 152 SQINYLR|DW 0.091 . BBOV_III000530 158 RDWVSAK|SN 0.101 . BBOV_III000530 164 KSNAVSR|AL 0.144 . BBOV_III000530 170 RALQNAR|KT 0.088 . BBOV_III000530 171 ALQNARK|TV 0.093 . BBOV_III000530 175 ARKTVPK|PG 0.071 . BBOV_III000530 182 PGIYLYR|TC 0.098 . BBOV_III000530 190 CNDIMVK|TE 0.055 . BBOV_III000530 193 IMVKTER|YC 0.093 . BBOV_III000530 196 KTERYCR|TL 0.252 . BBOV_III000530 201 CRTLVTK|LH 0.070 . BBOV_III000530 208 LHGLYLK|AV 0.075 . BBOV_III000530 213 LKAVTLK|LK 0.064 . BBOV_III000530 215 AVTLKLK|DL 0.069 . BBOV_III000530 222 DLISFGK|DP 0.061 . BBOV_III000530 230 PVLNIVR|VV 0.076 . BBOV_III000530 248 TGLTNIK|YN 0.061 . BBOV_III000530 261 PFDVFMK|GQ 0.066 . BBOV_III000530 266 MKGQYYR|LF 0.088 . BBOV_III000530 285 HLLQNIR|SL 0.121 . BBOV_III000530 301 ADLLGPR|RM 0.066 . BBOV_III000530 302 DLLGPRR|ML 0.131 . BBOV_III000530 326 VYYFAYK|NA 0.061 . BBOV_III000530 342 ATQVAVK|GL 0.095 . BBOV_III000530 357 THHLVEK|VV 0.095 . BBOV_III000530 361 VEKVVDR|IR 0.093 . BBOV_III000530 363 KVVDRIR|AK 0.085 . BBOV_III000530 365 VDRIRAK|QG 0.068 . BBOV_III000530 400 LIPMLNR|RQ 0.060 . BBOV_III000530 401 IPMLNRR|QA 0.166 . BBOV_III000530 408 QALPDCR|DV 0.132 . BBOV_III000530 419 AVQQYIK|RK 0.053 . BBOV_III000530 420 VQQYIKR|KC 0.170 . BBOV_III000530 421 QQYIKRK|CS 0.090 . BBOV_III000530 424 IKRKCSR|YR 0.106 . BBOV_III000530 426 RKCSRYR|AC 0.141 . BBOV_III000530 447 VCAYYAR|FG 0.113 . BBOV_III000530 454 FGSASDR|RR 0.089 . BBOV_III000530 455 GSASDRR|RV 0.258 . BBOV_III000530 456 SASDRRR|VT 0.233 . BBOV_III000530 476 VALFGAK|VD 0.057 . ____________________________^_________________

  • Fasta :-

    >BBOV_III000530 AGCTCCCAACTAATATCTTACACATACAAATGGGCGATTCATAGCCGTATACCGGCGATG GCTGCGTTATCTTGGATAACTACGCCTACACATCGGCAACAACATGCCAAAGTAGTTATA CACCTGAAGGCCAAACAACCACTTACCAAGGCGGGATCCATGACACCTTAATCGCACGCC ATATGTGCAAATGCTGCGCTGTGGTACCATCACAGCACGTAAATGTCTCCAGGAAGCAAT ACACGATGCTGATGTTTGTCTTCTTTTACATGTGCATATTTGCAACGAGTGAAGTGGTCT CCTTACATCCTACGGCCGTGGTACATTTAAAAGTCGATGCTGTAAACGCAAAGACAGTTC CCGTATATCGTAAACGCTCTGTGAAATGGCAGAATCCTACATGTGCGGAATCACCGTGTT ATGGACAACGTCTCTTGACGTTTATTCGCCCAAAGACACTGATACGGGCTCCGCAACAGG TAGAACATGCTTCTAGGTATGAAACTGCACCATTATATTCTAGCAGTGGCATTCGGAGCT ATGCCAGATGTGATCTCCAGGGTAGCCCGACCGCTTTGGCAGCAACAGGCAACACTCTTG CAGTAGCCTCCGTAGCATCGCAAATCAACTATCTGCGCGATTGGGTGTCTGCCAAGAGTA ATGCCGTTTCACGCGCATTGCAAAATGCGCGCAAGACTGTACCCAAACCGGGTATATACC TATATCGCACCTGCAATGACATCATGGTAAAGACTGAACGTTACTGCAGGACACTGGTCA CGAAGCTACATGGACTCTATCTCAAGGCAGTTACACTTAAACTCAAGGATCTTATAAGCT TTGGGAAGGACCCAGTGCTAAATATAGTAAGGGTGGTAGCCATGGTCTATGCGCTTGACT GGTGGACCGGTTTGACCAATATCAAATACAACTTTGATCTCAGCCCTTTTGACGTATTCA TGAAGGGGCAATATTACCGCCTGTTTACATCATTATTCCTCCACAATGGAGTTGTGCACC TACTGCAAAATATAAGGTCACTATGGGCCATAGGCTACGAGGCTGCAGATCTACTGGGAC CCAGGCGCATGCTAACAATCTATCTCGTATCTGGCTTGGTGGCGAACTACATCAGCTACG TGTACTACTTTGCGTACAAAAATGCAGTACCAGCACACGTCTTCAATGCCACGCAGGTGG CTGTCAAAGGATTGGGGCAGATGGGCATGTCCACTCATCACCTAGTGGAGAAGGTAGTTG ACCGTATTCGTGCCAAGCAGGGTGCACTGTCCCTACCTTTGTTCATGGCATCATACCTCA ACGATACTATCTTCCACACAGTGGATACATATCTAGCGCCATTAATACCAATGCTAAACC GCAGGCAGGCATTGCCTGACTGTCGTGATGTCAACTGCGCAGTGCAGCAGTACATCAAAA GAAAGTGCTCGCGTTACAGGGCCTGTGGCGCATCCGCAGCGATTTATGGACTCATGGGAG CTGTATGCGCATATTACGCGCGATTCGGGTCAGCAAGTGACAGAAGAAGGGTAACGGAGA TCATCACCAGCGCCATAGGGCAAAATATAGTAGCGCTATTCGGAGCCAAAGTAGATCACG TGTCGCACCTCGCAGGGTTCCTTACAGGAATGTGCCTCACCATGGCTTTTTAGCACATAA AAGAGTAATTGTGCTTAG
  • Download Fasta

  • Fasta :-

    MCKCCAVVPSQHVNVSRKQYTMLMFVFFYMCIFATSEVVSLHPTAVVHLKVDAVNAKTVP VYRKRSVKWQNPTCAESPCYGQRLLTFIRPKTLIRAPQQVEHASRYETAPLYSSSGIRSY ARCDLQGSPTALAATGNTLAVASVASQINYLRDWVSAKSNAVSRALQNARKTVPKPGIYL YRTCNDIMVKTERYCRTLVTKLHGLYLKAVTLKLKDLISFGKDPVLNIVRVVAMVYALDW WTGLTNIKYNFDLSPFDVFMKGQYYRLFTSLFLHNGVVHLLQNIRSLWAIGYEAADLLGP RRMLTIYLVSGLVANYISYVYYFAYKNAVPAHVFNATQVAVKGLGQMGMSTHHLVEKVVD RIRAKQGALSLPLFMASYLNDTIFHTVDTYLAPLIPMLNRRQALPDCRDVNCAVQQYIKR KCSRYRACGASAAIYGLMGAVCAYYARFGSASDRRRVTEIITSAIGQNIVALFGAKVDHV SHLAGFLTGMCLTMAF

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
BBOV_III00053066 SYRKRSVKWQ0.994unspBBOV_III000530423 SKRKCSRYRA0.995unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India