BBOV_III002870 | signal peptidase family protein

_IDPredictionOTHERSPmTPCS_Position
BBOV_III002870SP0.2538750.7353310.010795CS pos: 30-31. LSG-QY. Pr: 0.4987
No Results

  • Fasta :-

    >BBOV_III002870 MTAPAIRCYTVLSTSLFALWAALALNYLSGQYYRANNPGSGSIKHIRTFELKTVTGQVDR AAFELNLSYDLRDVFDWSANVIFLYATVNYETPKHPVNELIIFDKIITSKEEAYEPGADI VSKYYMIDYARSLRKARVTLRLHYCFVPIGGLIKSYQLAESVFTMPSDYVL
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/BBOV_III002870.fa Sequence name : BBOV_III002870 Sequence length : 171 VALUES OF COMPUTED PARAMETERS Coef20 : 4.933 CoefTot : -0.109 ChDiff : 1 ZoneTo : 49 KR : 4 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.853 1.647 0.285 0.641 MesoH : -0.671 0.154 -0.403 0.163 MuHd_075 : 11.739 12.727 4.775 3.359 MuHd_095 : 21.168 16.678 6.758 4.994 MuHd_100 : 29.496 20.120 8.651 7.289 MuHd_105 : 37.414 20.146 9.475 9.143 Hmax_075 : 14.933 12.950 1.903 5.060 Hmax_095 : 13.700 4.100 -0.885 2.900 Hmax_100 : 12.400 11.100 2.291 5.180 Hmax_105 : 5.338 1.700 -0.124 3.062 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.3308 0.6692 DFMC : 0.1557 0.8443 This protein is probably imported in mitochondria. f(Ser) = 0.1020 f(Arg) = 0.0612 CMi = 0.65531 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 171 BBOV_III002870 MTAPAIRCYTVLSTSLFALWAALALNYLSGQYYRANNPGSGSIKHIRTFELKTVTGQVDRAAFELNLSYDLRDVFDWSAN 80 VIFLYATVNYETPKHPVNELIIFDKIITSKEEAYEPGADIVSKYYMIDYARSLRKARVTLRLHYCFVPIGGLIKSYQLAE 160 SVFTMPSDYVL 240 ................................................................................ 80 ................................................................................ 160 ........... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ BBOV_III002870 7 MTAPAIR|CY 0.081 . BBOV_III002870 34 LSGQYYR|AN 0.107 . BBOV_III002870 44 PGSGSIK|HI 0.082 . BBOV_III002870 47 GSIKHIR|TF 0.119 . BBOV_III002870 52 IRTFELK|TV 0.082 . BBOV_III002870 60 VTGQVDR|AA 0.097 . BBOV_III002870 72 NLSYDLR|DV 0.178 . BBOV_III002870 94 VNYETPK|HP 0.066 . BBOV_III002870 105 ELIIFDK|II 0.075 . BBOV_III002870 110 DKIITSK|EE 0.059 . BBOV_III002870 123 GADIVSK|YY 0.070 . BBOV_III002870 131 YMIDYAR|SL 0.173 . BBOV_III002870 134 DYARSLR|KA 0.249 . BBOV_III002870 135 YARSLRK|AR 0.076 . BBOV_III002870 137 RSLRKAR|VT 0.228 . BBOV_III002870 141 KARVTLR|LH 0.078 . BBOV_III002870 154 PIGGLIK|SY 0.076 . ____________________________^_________________

  • Fasta :-

    >BBOV_III002870 ATGACCGCTCCAGCAATTCGCTGTTACACGGTCCTGAGCACTTCCCTATTTGCATTATGG GCTGCACTGGCCCTGAATTACCTGAGCGGCCAATACTATCGTGCAAACAACCCGGGAAGT GGTTCGATCAAGCACATTAGGACATTTGAATTGAAGACAGTAACCGGGCAGGTTGATCGG GCAGCTTTTGAGTTGAATTTAAGTTACGACCTTCGTGATGTGTTTGATTGGAGTGCGAAT GTAATATTCCTGTACGCCACTGTCAATTATGAGACTCCCAAGCACCCAGTGAACGAGTTG ATCATATTTGATAAGATCATAACCTCGAAGGAAGAAGCTTACGAGCCCGGCGCGGATATC GTCAGCAAGTACTACATGATCGACTATGCACGTTCGCTTCGCAAAGCTCGTGTAACCTTG CGTCTGCACTACTGTTTCGTGCCCATTGGAGGTTTAATCAAGTCGTACCAACTGGCCGAA TCGGTATTCACGATGCCATCGGATTATGTACTGTAGGATGCTATAGTCCTGATGGCACCA TCGGTGTGCACATTGGGTGTTGTTCTGGGTCCTACCTTTGCATAATGGGCACAGATAAGC TCTAATCAATCATTAAGTACCCTTCAAAGCGTAGC
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  • Fasta :-

    MTAPAIRCYTVLSTSLFALWAALALNYLSGQYYRANNPGSGSIKHIRTFELKTVTGQVDR AAFELNLSYDLRDVFDWSANVIFLYATVNYETPKHPVNELIIFDKIITSKEEAYEPGADI VSKYYMIDYARSLRKARVTLRLHYCFVPIGGLIKSYQLAESVFTMPSDYVL

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IDSitePeptideScoreMethod
BBOV_III002870109 SKIITSKEEA0.994unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India