BBOV_III007090 | proteasome A-type and B-type family protein

_IDPredictionOTHERSPmTPCS_Position
BBOV_III007090OTHER0.9941960.0057400.000064
No Results

  • Fasta :-

    >BBOV_III007090 MGDIESYNGGAVVAMVGNGCVAIACDKRLGMNGQHTISSNFPKAFKVTDTAYFAACGLAT DIQTMKSEIEFKTNMYALRCEKNMGVKTLAHMVGSLLYSRRFGPWFVSSVVAGLDKDTPH IYCFDLIGAPCNAKDFVVVGTCSEQLYGICESLYRPNMEPSELFETISQCLMAAIDRDCL SGWGAEVHMITPEKITVSTLKTRMD
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/BBOV_III007090.fa Sequence name : BBOV_III007090 Sequence length : 205 VALUES OF COMPUTED PARAMETERS Coef20 : 3.081 CoefTot : -0.250 ChDiff : -4 ZoneTo : 2 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.559 1.782 0.431 0.626 MesoH : -0.358 0.403 -0.251 0.240 MuHd_075 : 17.482 6.651 3.933 1.866 MuHd_095 : 10.384 13.675 2.841 2.800 MuHd_100 : 7.888 9.325 2.616 1.796 MuHd_105 : 1.386 2.246 3.092 0.589 Hmax_075 : 10.588 8.050 1.524 3.938 Hmax_095 : 11.900 15.000 0.964 4.720 Hmax_100 : 9.800 10.200 1.963 4.160 Hmax_105 : 12.133 12.833 2.758 4.760 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9950 0.0050 DFMC : 0.9961 0.0039
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 205 BBOV_III007090 MGDIESYNGGAVVAMVGNGCVAIACDKRLGMNGQHTISSNFPKAFKVTDTAYFAACGLATDIQTMKSEIEFKTNMYALRC 80 EKNMGVKTLAHMVGSLLYSRRFGPWFVSSVVAGLDKDTPHIYCFDLIGAPCNAKDFVVVGTCSEQLYGICESLYRPNMEP 160 SELFETISQCLMAAIDRDCLSGWGAEVHMITPEKITVSTLKTRMD 240 ................................................................................ 80 ................................................................................ 160 ............................................. 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ BBOV_III007090 27 VAIACDK|RL 0.065 . BBOV_III007090 28 AIACDKR|LG 0.193 . BBOV_III007090 43 ISSNFPK|AF 0.085 . BBOV_III007090 46 NFPKAFK|VT 0.064 . BBOV_III007090 66 TDIQTMK|SE 0.077 . BBOV_III007090 72 KSEIEFK|TN 0.073 . BBOV_III007090 79 TNMYALR|CE 0.087 . BBOV_III007090 82 YALRCEK|NM 0.102 . BBOV_III007090 87 EKNMGVK|TL 0.066 . BBOV_III007090 100 GSLLYSR|RF 0.085 . BBOV_III007090 101 SLLYSRR|FG 0.130 . BBOV_III007090 116 VVAGLDK|DT 0.066 . BBOV_III007090 134 GAPCNAK|DF 0.072 . BBOV_III007090 155 ICESLYR|PN 0.069 . BBOV_III007090 177 LMAAIDR|DC 0.095 . BBOV_III007090 194 HMITPEK|IT 0.064 . BBOV_III007090 201 ITVSTLK|TR 0.062 . BBOV_III007090 203 VSTLKTR|MD 0.091 . ____________________________^_________________

  • Fasta :-

    >BBOV_III007090 CAATATATGTACTCGCACATATTATTTTTATAGCTTACCTGAGATACATAAATACGACGG AATTTCTCAGGGCGTTGTGATTCGCAAGAGTCTCGTATATATGGGGGATATCGAAAGTTA CAACGGAGGCGCCGTTGTCGCCATGGTAGGCAACGGTTGCGTAGCCATCGCATGTGATAA ACGTCTGGGTATGAATGGACAGCACACAATAAGCTCGAACTTTCCCAAGGCCTTTAAAGT TACAGATACAGCATATTTCGCGGCTTGTGGCTTAGCTACTGATATTCAAACTATGAAATC GGAAATCGAGTTTAAAACTAACATGTATGCTCTGAGATGTGAGAAAAATATGGGAGTTAA AACATTAGCTCATATGGTCGGCTCTTTGCTATATTCTCGCCGTTTCGGGCCTTGGTTCGT CTCTTCGGTTGTTGCGGGACTTGATAAGGACACGCCACATATATATTGTTTTGATCTGAT TGGCGCACCGTGCAATGCAAAAGACTTTGTGGTAGTCGGAACTTGCTCAGAACAGCTATA TGGTATATGCGAGTCGTTATATCGCCCCAATATGGAGCCATCTGAGCTTTTTGAGACAAT TTCTCAGTGTCTCATGGCCGCTATTGATCGAGATTGTCTTTCAGGTTGGGGTGCTGAGGT TCATATGATAACACCGGAGAAGATAACAGTCTCTACTTTGAAAACCAGAATGGATTGA
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  • Fasta :-

    MGDIESYNGGAVVAMVGNGCVAIACDKRLGMNGQHTISSNFPKAFKVTDTAYFAACGLAT DIQTMKSEIEFKTNMYALRCEKNMGVKTLAHMVGSLLYSRRFGPWFVSSVVAGLDKDTPH IYCFDLIGAPCNAKDFVVVGTCSEQLYGICESLYRPNMEPSELFETISQCLMAAIDRDCL SGWGAEVHMITPEKITVSTLKTRMD

  • title: active site
  • coordinates: G10,D26,R28,K43,T141,D178,S181,G182
No Results
No Results
IDSitePeptideScoreMethod
BBOV_III00709067 SQTMKSEIEF0.994unsp

     



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India